Protein–RNA interactions for Protein: P43699

NKX2-1, Homeobox protein Nkx-2.1, humanhuman

Predicted RBP Predictions only

Length 371 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-1P43699 AC012055.2-201ENST00000504167 335 ntTSL 3 BASIC2.54□□□□□ -2
NKX2-1P43699 MTND3P25-201ENST00000509243 135 ntBASIC2.54□□□□□ -2
NKX2-1P43699 AC098799.2-201ENST00000509466 868 ntBASIC2.54□□□□□ -2
NKX2-1P43699 AC097467.3-212ENST00000512269 568 ntTSL 3 BASIC2.54□□□□□ -2
NKX2-1P43699 RNU1-86P-201ENST00000516108 154 ntBASIC2.54□□□□□ -2
NKX2-1P43699 RNU1-107P-201ENST00000516617 154 ntBASIC2.54□□□□□ -2
NKX2-1P43699 RPL7P20-201ENST00000520308 745 ntBASIC2.54□□□□□ -2
NKX2-1P43699 AC087241.2-201ENST00000535801 324 ntBASIC2.54□□□□□ -2
NKX2-1P43699 AC008115.2-201ENST00000539988 241 ntTSL 3 BASIC2.54□□□□□ -2
NKX2-1P43699 AL512791.1-201ENST00000555853 300 ntTSL 3 BASIC2.54□□□□□ -2
NKX2-1P43699 AL121821.2-201ENST00000556081 394 ntBASIC2.54□□□□□ -2
NKX2-1P43699 AL121821.1-201ENST00000557067 530 ntTSL 3 BASIC2.54□□□□□ -2
NKX2-1P43699 uc_338.14-201ENST00000613162 166 ntBASIC2.54□□□□□ -2
NKX2-1P43699 AC039056.2-201ENST00000622261 511 ntBASIC2.54□□□□□ -2
NKX2-1P43699 AC010722.1-201ENST00000622595 582 ntTSL 5 BASIC2.54□□□□□ -2
NKX2-1P43699 PCDH11Y-201ENST00000215473 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC2.54□□□□□ -2
NKX2-1P43699 DDX6-206ENST00000534980 4538 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
NKX2-1P43699 SAMD9-201ENST00000379958 6852 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
NKX2-1P43699 STAU2-201ENST00000355780 4061 ntTSL 1 (best) BASIC2.53□□□□□ -2
NKX2-1P43699 AC010329.5-201ENST00000623497 2174 ntBASIC2.53□□□□□ -2
NKX2-1P43699 IKZF2-213ENST00000457361 9350 ntTSL 5 BASIC2.53□□□□□ -2
NKX2-1P43699 AK9-201ENST00000285397 2566 ntTSL 1 (best) BASIC2.53□□□□□ -2
NKX2-1P43699 OR13G1-202ENST00000642119 2568 ntAPPRIS P1 BASIC2.53□□□□□ -2
NKX2-1P43699 DLEU2_6.3-201ENST00000340052 136 ntBASIC2.53□□□□□ -2
NKX2-1P43699 SNORA62.3-201ENST00000365110 153 ntBASIC2.53□□□□□ -2
NKX2-1P43699 RNU6-1280P-201ENST00000365211 107 ntBASIC2.53□□□□□ -2
NKX2-1P43699 IARS-201ENST00000375627 697 ntTSL 3 BASIC2.53□□□□□ -2
NKX2-1P43699 SNORD21-201ENST00000383953 95 ntBASIC2.53□□□□□ -2
NKX2-1P43699 Y_RNA.414-201ENST00000384011 101 ntBASIC2.53□□□□□ -2
NKX2-1P43699 RNU6-19P-201ENST00000384718 107 ntBASIC2.53□□□□□ -2
NKX2-1P43699 MIR134-201ENST00000385258 73 ntBASIC2.53□□□□□ -2
NKX2-1P43699 U3.26-201ENST00000391236 204 ntBASIC2.53□□□□□ -2
NKX2-1P43699 OPRPN-201ENST00000399575 1040 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2
NKX2-1P43699 AL122016.1-201ENST00000403365 367 ntBASIC2.53□□□□□ -2
NKX2-1P43699 RPS29P4-201ENST00000414733 161 ntBASIC2.53□□□□□ -2
NKX2-1P43699 NCOR1P3-201ENST00000420479 303 ntBASIC2.53□□□□□ -2
NKX2-1P43699 PTGES3P4-201ENST00000426243 356 ntBASIC2.53□□□□□ -2
NKX2-1P43699 ATP6V0E1P4-201ENST00000427294 242 ntBASIC2.53□□□□□ -2
NKX2-1P43699 PLCE1-AS2-203ENST00000433038 396 ntTSL 2 BASIC2.53□□□□□ -2
NKX2-1P43699 AL035634.1-201ENST00000446768 372 ntTSL 2 BASIC2.53□□□□□ -2
NKX2-1P43699 LINC01755-201ENST00000455010 453 ntTSL 2 BASIC2.53□□□□□ -2
NKX2-1P43699 AL590639.1-201ENST00000456484 337 ntBASIC2.53□□□□□ -2
NKX2-1P43699 AL441985.1-201ENST00000457727 251 ntBASIC2.53□□□□□ -2
NKX2-1P43699 PLCXD2-AS1-201ENST00000493131 491 ntTSL 3 BASIC2.53□□□□□ -2
NKX2-1P43699 AC116655.1-201ENST00000508324 901 ntBASIC2.53□□□□□ -2
NKX2-1P43699 FGF7P4-201ENST00000509595 295 ntBASIC2.53□□□□□ -2
NKX2-1P43699 RNU5F-8P-201ENST00000515941 111 ntBASIC2.53□□□□□ -2
NKX2-1P43699 RNU6-864P-201ENST00000516256 108 ntBASIC2.53□□□□□ -2
NKX2-1P43699 AC069113.1-201ENST00000517763 267 ntBASIC2.53□□□□□ -2
NKX2-1P43699 AP001783.1-202ENST00000534620 408 ntTSL 2 BASIC2.53□□□□□ -2
NKX2-1P43699 SARNP-203ENST00000552080 726 ntTSL 2 BASIC2.53□□□□□ -2
NKX2-1P43699 AL049775.2-201ENST00000557547 558 ntTSL 4 BASIC2.53□□□□□ -2
NKX2-1P43699 AC074052.2-201ENST00000562516 214 ntTSL 3 BASIC2.53□□□□□ -2
NKX2-1P43699 AC011471.1-201ENST00000585766 187 ntBASIC2.53□□□□□ -2
NKX2-1P43699 AL589765.7-201ENST00000601684 629 ntTSL 3 BASIC2.53□□□□□ -2
NKX2-1P43699 AC073657.2-201ENST00000605661 303 ntBASIC2.53□□□□□ -2
NKX2-1P43699 AL357078.3-201ENST00000607528 618 ntBASIC2.53□□□□□ -2
NKX2-1P43699 DLEU2_6.2-201ENST00000620994 136 ntBASIC2.53□□□□□ -2
NKX2-1P43699 AL136221.1-201ENST00000621449 509 ntBASIC2.53□□□□□ -2
NKX2-1P43699 THOC2-201ENST00000245838 5609 ntAPPRIS P1 TSL 5 BASIC2.53□□□□□ -2
NKX2-1P43699 MUM1L1-203ENST00000372552 3957 ntAPPRIS P1 TSL 5 BASIC2.52□□□□□ -2.01
NKX2-1P43699 FTX-214ENST00000638437 12267 ntTSL 5 BASIC2.52□□□□□ -2.01
NKX2-1P43699 NOX4-202ENST00000343727 3347 ntTSL 2 BASIC2.52□□□□□ -2.01
NKX2-1P43699 AC128685.1-201ENST00000490357 1834 ntTSL 5 BASIC2.52□□□□□ -2.01
NKX2-1P43699 Y_RNA.135-201ENST00000363439 95 ntBASIC2.52□□□□□ -2.01
NKX2-1P43699 Y_RNA.301-201ENST00000364990 103 ntBASIC2.52□□□□□ -2.01
NKX2-1P43699 Y_RNA.324-201ENST00000365165 102 ntBASIC2.52□□□□□ -2.01
NKX2-1P43699 RNU1-100P-201ENST00000365255 165 ntBASIC2.52□□□□□ -2.01
NKX2-1P43699 RNU6-898P-201ENST00000365627 104 ntBASIC2.52□□□□□ -2.01
NKX2-1P43699 RNU6-128P-201ENST00000383976 107 ntBASIC2.52□□□□□ -2.01
NKX2-1P43699 RNU6-1083P-201ENST00000384022 107 ntBASIC2.52□□□□□ -2.01
NKX2-1P43699 RNU6-72P-201ENST00000384285 79 ntBASIC2.52□□□□□ -2.01
NKX2-1P43699 MIR887-201ENST00000401258 79 ntBASIC2.52□□□□□ -2.01
NKX2-1P43699 SNORD88.1-201ENST00000408684 91 ntBASIC2.52□□□□□ -2.01
NKX2-1P43699 RNU2-41P-201ENST00000410991 178 ntBASIC2.52□□□□□ -2.01
NKX2-1P43699 AC022028.1-201ENST00000412054 408 ntBASIC2.52□□□□□ -2.01
NKX2-1P43699 MTND3P8-201ENST00000412909 339 ntBASIC2.52□□□□□ -2.01
NKX2-1P43699 AL357500.1-201ENST00000413004 279 ntTSL 3 BASIC2.52□□□□□ -2.01
NKX2-1P43699 ELF3-AS1-201ENST00000415582 500 ntTSL 2 BASIC2.52□□□□□ -2.01
NKX2-1P43699 TOMM20P4-201ENST00000427861 435 ntBASIC2.52□□□□□ -2.01
NKX2-1P43699 MTND4LP16-201ENST00000440828 295 ntBASIC2.52□□□□□ -2.01
NKX2-1P43699 U91324.1-201ENST00000442864 447 ntTSL 5 BASIC2.52□□□□□ -2.01
NKX2-1P43699 AC233279.1-201ENST00000455300 423 ntBASIC2.52□□□□□ -2.01
NKX2-1P43699 RPL27AP5-201ENST00000469428 449 ntBASIC2.52□□□□□ -2.01
NKX2-1P43699 AC114316.1-201ENST00000511323 278 ntTSL 5 BASIC2.52□□□□□ -2.01
NKX2-1P43699 AC108043.1-201ENST00000512696 574 ntBASIC2.52□□□□□ -2.01
NKX2-1P43699 Y_RNA.702-201ENST00000516843 96 ntBASIC2.52□□□□□ -2.01
NKX2-1P43699 AC087854.1-201ENST00000519706 414 ntBASIC2.52□□□□□ -2.01
NKX2-1P43699 AP004607.1-201ENST00000524456 203 ntBASIC2.52□□□□□ -2.01
NKX2-1P43699 LINC00508-201ENST00000538901 194 ntTSL 5 BASIC2.52□□□□□ -2.01
NKX2-1P43699 CASC1-205ENST00000545133 2146 ntAPPRIS ALT2 TSL 2 BASIC2.52□□□□□ -2.01
NKX2-1P43699 GLYCAM1-201ENST00000546596 285 ntBASIC2.52□□□□□ -2.01
NKX2-1P43699 AC011611.2-201ENST00000549888 358 ntTSL 3 BASIC2.52□□□□□ -2.01
NKX2-1P43699 MIR2682-201ENST00000580305 110 ntBASIC2.52□□□□□ -2.01
NKX2-1P43699 AC010928.1-202ENST00000589354 473 ntTSL 3 BASIC2.52□□□□□ -2.01
NKX2-1P43699 AC092747.3-201ENST00000603769 301 ntBASIC2.52□□□□□ -2.01
NKX2-1P43699 AC019159.1-201ENST00000605094 187 ntBASIC2.52□□□□□ -2.01
NKX2-1P43699 RNU6-91P-201ENST00000607774 107 ntBASIC2.52□□□□□ -2.01
NKX2-1P43699 RMST_7.1-201ENST00000621935 268 ntBASIC2.52□□□□□ -2.01
NKX2-1P43699 AC244517.5-202ENST00000623741 500 ntTSL 3 BASIC2.52□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 177.9 ms