Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 AL359854.1-201ENST00000614203 1594 ntBASIC0.49□□□□□ -2.33
CUX1P39880 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC0.48□□□□□ -2.33
CUX1P39880 RNU6-486P-201ENST00000363116 107 ntBASIC0.48□□□□□ -2.33
CUX1P39880 S100A12-201ENST00000368737 518 ntAPPRIS P1 TSL 1 (best) BASIC0.48□□□□□ -2.33
CUX1P39880 AL117342.1-201ENST00000404861 406 ntBASIC0.48□□□□□ -2.33
CUX1P39880 C1DP1-201ENST00000426049 402 ntBASIC0.48□□□□□ -2.33
CUX1P39880 AC020719.1-201ENST00000448977 518 ntTSL 3 BASIC0.48□□□□□ -2.33
CUX1P39880 FCF1P6-201ENST00000456841 595 ntBASIC0.48□□□□□ -2.33
CUX1P39880 CYP2C59P-201ENST00000457790 269 ntBASIC0.48□□□□□ -2.33
CUX1P39880 CENPUP1-201ENST00000526649 1202 ntBASIC0.48□□□□□ -2.33
CUX1P39880 AC125611.1-201ENST00000549563 229 ntBASIC0.48□□□□□ -2.33
CUX1P39880 AL391813.1-201ENST00000603098 260 ntBASIC0.48□□□□□ -2.33
CUX1P39880 AL161729.4-201ENST00000604650 476 ntBASIC0.48□□□□□ -2.33
CUX1P39880 HMGB1P51-201ENST00000605166 638 ntBASIC0.48□□□□□ -2.33
CUX1P39880 AC079610.3-201ENST00000606960 147 ntTSL 3 BASIC0.48□□□□□ -2.33
CUX1P39880 XRCC4-202ENST00000338635 1579 ntAPPRIS P4 TSL 2 BASIC0.48□□□□□ -2.33
CUX1P39880 SNORD1A-201ENST00000364968 72 ntBASIC0.48□□□□□ -2.33
CUX1P39880 RNY4P3-201ENST00000365254 95 ntBASIC0.48□□□□□ -2.33
CUX1P39880 AL355615.1-201ENST00000406187 641 ntBASIC0.48□□□□□ -2.33
CUX1P39880 AL591848.2-201ENST00000442712 522 ntTSL 3 BASIC0.48□□□□□ -2.33
CUX1P39880 AL160287.1-201ENST00000455612 432 ntTSL 3 BASIC0.48□□□□□ -2.33
CUX1P39880 AC104692.1-201ENST00000472406 90 ntBASIC0.48□□□□□ -2.33
CUX1P39880 AC021739.1-201ENST00000559631 174 ntBASIC0.48□□□□□ -2.33
CUX1P39880 TEX41-243ENST00000614173 190 ntTSL 5 BASIC0.48□□□□□ -2.33
CUX1P39880 ZNRD1-AS1_2.5-201ENST00000614729 76 ntBASIC0.48□□□□□ -2.33
CUX1P39880 MTND4P16-201ENST00000466108 1367 ntBASIC0.47□□□□□ -2.33
CUX1P39880 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC0.47□□□□□ -2.33
CUX1P39880 RNA5SP501-201ENST00000410990 112 ntBASIC0.47□□□□□ -2.33
CUX1P39880 HSPE1P13-201ENST00000451143 297 ntBASIC0.47□□□□□ -2.33
CUX1P39880 AL450344.2-201ENST00000455229 614 ntTSL 5 BASIC0.47□□□□□ -2.33
CUX1P39880 RPS26P55-201ENST00000471178 356 ntBASIC0.47□□□□□ -2.33
CUX1P39880 RAP1BP2-201ENST00000478270 544 ntBASIC0.47□□□□□ -2.33
CUX1P39880 SNORD116-28-201ENST00000516123 91 ntBASIC0.47□□□□□ -2.33
CUX1P39880 OR6C68-201ENST00000548615 939 ntAPPRIS P1 BASIC0.47□□□□□ -2.33
CUX1P39880 AC068643.2-202ENST00000552759 622 ntTSL 3 BASIC0.47□□□□□ -2.33
CUX1P39880 SNRPGP17-201ENST00000603780 214 ntBASIC0.47□□□□□ -2.33
CUX1P39880 AC135803.1-201ENST00000608748 565 ntBASIC0.47□□□□□ -2.33
CUX1P39880 uc_338.14-201ENST00000613162 166 ntBASIC0.47□□□□□ -2.33
CUX1P39880 ZNF663P-202ENST00000641770 1131 ntBASIC0.47□□□□□ -2.33
CUX1P39880 RNU1-124P-201ENST00000363861 145 ntBASIC0.46□□□□□ -2.34
CUX1P39880 SNORA4.3-201ENST00000365564 137 ntBASIC0.46□□□□□ -2.34
CUX1P39880 RNU6-968P-201ENST00000384076 107 ntBASIC0.46□□□□□ -2.34
CUX1P39880 AL354733.1-204ENST00000412069 424 ntTSL 5 BASIC0.46□□□□□ -2.34
CUX1P39880 SPATA17-AS1-201ENST00000415765 420 ntTSL 5 BASIC0.46□□□□□ -2.34
CUX1P39880 AL357315.1-201ENST00000422930 254 ntTSL 5 BASIC0.46□□□□□ -2.34
CUX1P39880 RPL23AP95-201ENST00000426806 265 ntBASIC0.46□□□□□ -2.34
CUX1P39880 FO393419.3-201ENST00000428741 282 ntBASIC0.46□□□□□ -2.34
CUX1P39880 MTCO1P53-201ENST00000441633 699 ntBASIC0.46□□□□□ -2.34
CUX1P39880 LINC01765-201ENST00000448680 491 ntTSL 2 BASIC0.46□□□□□ -2.34
CUX1P39880 AC006512.1-201ENST00000468816 291 ntBASIC0.46□□□□□ -2.34
CUX1P39880 AC145146.1-201ENST00000496370 254 ntBASIC0.46□□□□□ -2.34
CUX1P39880 OR5AK1P-201ENST00000524837 922 ntBASIC0.46□□□□□ -2.34
CUX1P39880 AC006199.1-201ENST00000548728 219 ntBASIC0.46□□□□□ -2.34
CUX1P39880 CYB5AP5-201ENST00000549779 389 ntBASIC0.46□□□□□ -2.34
CUX1P39880 AC120349.1-201ENST00000599498 282 ntTSL 5 BASIC0.46□□□□□ -2.34
CUX1P39880 uc_338.17-201ENST00000619633 179 ntBASIC0.46□□□□□ -2.34
CUX1P39880 MYCBP2-AS1-209ENST00000631152 412 ntTSL 5 BASIC0.46□□□□□ -2.34
CUX1P39880 RNU6-884P-201ENST00000363889 107 ntBASIC0.45□□□□□ -2.34
CUX1P39880 MIR95-201ENST00000385072 81 ntBASIC0.45□□□□□ -2.34
CUX1P39880 RNU2-64P-201ENST00000411315 191 ntBASIC0.45□□□□□ -2.34
CUX1P39880 USP9YP26-201ENST00000421008 661 ntBASIC0.45□□□□□ -2.34
CUX1P39880 USP9YP18-201ENST00000425912 695 ntBASIC0.45□□□□□ -2.34
CUX1P39880 USP9YP17-201ENST00000444617 696 ntBASIC0.45□□□□□ -2.34
CUX1P39880 PGBD4P5-201ENST00000445958 426 ntBASIC0.45□□□□□ -2.34
CUX1P39880 AC108729.1-201ENST00000487812 947 ntBASIC0.45□□□□□ -2.34
CUX1P39880 RNU6-202P-201ENST00000515998 96 ntBASIC0.45□□□□□ -2.34
CUX1P39880 HSPA8P13-201ENST00000523715 472 ntBASIC0.45□□□□□ -2.34
CUX1P39880 AC008751.2-201ENST00000597885 980 ntBASIC0.45□□□□□ -2.34
CUX1P39880 AC092953.2-201ENST00000608000 699 ntBASIC0.45□□□□□ -2.34
CUX1P39880 AC021851.1-201ENST00000608537 1082 ntBASIC0.45□□□□□ -2.34
CUX1P39880 FTX_3.1-201ENST00000610451 147 ntBASIC0.45□□□□□ -2.34
CUX1P39880 AL109811.3-202ENST00000612387 651 ntTSL 3 BASIC0.45□□□□□ -2.34
CUX1P39880 AL109659.3-201ENST00000624985 950 ntBASIC0.45□□□□□ -2.34
CUX1P39880 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC0.44□□□□□ -2.34
CUX1P39880 RNU5A-1-201ENST00000362698 116 ntBASIC0.44□□□□□ -2.34
CUX1P39880 SNORD82-201ENST00000365530 70 ntBASIC0.44□□□□□ -2.34
CUX1P39880 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC0.44□□□□□ -2.34
CUX1P39880 AL139098.1-201ENST00000407291 389 ntBASIC0.44□□□□□ -2.34
CUX1P39880 RPS27P16-201ENST00000425758 201 ntBASIC0.44□□□□□ -2.34
CUX1P39880 AC020559.1-201ENST00000444229 583 ntTSL 2 BASIC0.44□□□□□ -2.34
CUX1P39880 SPIN4-AS1-201ENST00000451979 426 ntTSL 2 BASIC0.44□□□□□ -2.34
CUX1P39880 AC107463.1-203ENST00000509713 284 ntTSL 5 BASIC0.44□□□□□ -2.34
CUX1P39880 AC009930.1-201ENST00000522330 191 ntTSL 5 BASIC0.44□□□□□ -2.34
CUX1P39880 AL590705.4-201ENST00000532209 134 ntBASIC0.44□□□□□ -2.34
CUX1P39880 ELOCP5-201ENST00000604924 333 ntBASIC0.44□□□□□ -2.34
CUX1P39880 RNU5E-1-201ENST00000362477 120 ntBASIC0.43□□□□□ -2.34
CUX1P39880 RNU6-439P-201ENST00000384188 106 ntBASIC0.43□□□□□ -2.34
CUX1P39880 Y_RNA.476-201ENST00000384347 108 ntBASIC0.43□□□□□ -2.34
CUX1P39880 KATNBL1P6-201ENST00000453433 915 ntBASIC0.43□□□□□ -2.34
CUX1P39880 AC079140.2-201ENST00000506193 142 ntBASIC0.43□□□□□ -2.34
CUX1P39880 RNU6-1256P-201ENST00000516539 103 ntBASIC0.43□□□□□ -2.34
CUX1P39880 AC018437.2-201ENST00000517369 389 ntTSL 5 BASIC0.43□□□□□ -2.34
CUX1P39880 AC073544.2-201ENST00000601155 540 ntBASIC0.43□□□□□ -2.34
CUX1P39880 MIR8065-201ENST00000620577 100 ntBASIC0.43□□□□□ -2.34
CUX1P39880 AC006001.4-201ENST00000622243 395 ntBASIC0.43□□□□□ -2.34
CUX1P39880 AC007490.1-201ENST00000624321 703 ntBASIC0.43□□□□□ -2.34
CUX1P39880 AC013470.2-206ENST00000636804 771 ntAPPRIS P5 TSL 5 BASIC0.43□□□□□ -2.34
CUX1P39880 MIR506-201ENST00000384998 124 ntBASIC0.43□□□□□ -2.34
CUX1P39880 MIR29C-201ENST00000385231 88 ntBASIC0.43□□□□□ -2.34
CUX1P39880 BPY2DP-201ENST00000422208 265 ntBASIC0.43□□□□□ -2.34
Retrieved 100 of 98,524 protein–RNA pairs in 131.9 ms