Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 AC090132.2-201ENST00000615881 347 ntBASIC2.79□□□□□ -1.96
LMX1BO60663 AC105265.4-201ENST00000618391 306 ntTSL 5 BASIC2.79□□□□□ -1.96
LMX1BO60663 AP003481.1-201ENST00000637808 351 ntTSL 5 BASIC2.79□□□□□ -1.96
LMX1BO60663 ZNF883-201ENST00000619044 2051 ntAPPRIS P1 TSL 5 BASIC2.79□□□□□ -1.96
LMX1BO60663 ZNF826P-207ENST00000622273 1910 ntBASIC2.79□□□□□ -1.96
LMX1BO60663 ZNF807-201ENST00000328088 1707 ntBASIC2.79□□□□□ -1.96
LMX1BO60663 ABCG2-204ENST00000515655 4276 ntTSL 1 (best) BASIC2.79□□□□□ -1.96
LMX1BO60663 MINPP1-204ENST00000536010 2215 ntTSL 1 (best) BASIC2.78□□□□□ -1.96
LMX1BO60663 MYOT-208ENST00000515645 1578 ntTSL 2 BASIC2.78□□□□□ -1.96
LMX1BO60663 AC103993.1-201ENST00000521500 1584 ntTSL 5 BASIC2.78□□□□□ -1.96
LMX1BO60663 SLC4A7-201ENST00000295736 7757 ntAPPRIS P3 TSL 1 (best) BASIC2.78□□□□□ -1.96
LMX1BO60663 TUG1-202ENST00000521091 2110 ntTSL 1 (best) BASIC2.78□□□□□ -1.96
LMX1BO60663 RASA1-202ENST00000456692 3776 ntAPPRIS ALT2 TSL 1 (best) BASIC2.78□□□□□ -1.96
LMX1BO60663 MIS12-201ENST00000381165 2505 ntAPPRIS P1 TSL 1 (best) BASIC2.78□□□□□ -1.96
LMX1BO60663 PRKACB-201ENST00000370680 1914 ntTSL 1 (best) BASIC2.78□□□□□ -1.96
LMX1BO60663 PALMD-205ENST00000615664 1844 ntTSL 5 BASIC2.78□□□□□ -1.96
LMX1BO60663 UBE2L2-201ENST00000254302 429 ntBASIC2.78□□□□□ -1.96
LMX1BO60663 DEFB108F-201ENST00000344638 222 ntBASIC2.78□□□□□ -1.96
LMX1BO60663 MIR422A-201ENST00000362286 90 ntBASIC2.78□□□□□ -1.96
LMX1BO60663 RNA5SP295-201ENST00000362655 121 ntBASIC2.78□□□□□ -1.96
LMX1BO60663 RNU5A-1-201ENST00000362698 116 ntBASIC2.78□□□□□ -1.96
LMX1BO60663 Y_RNA.187-201ENST00000363918 113 ntBASIC2.78□□□□□ -1.96
LMX1BO60663 RNU6-7-201ENST00000364784 107 ntBASIC2.78□□□□□ -1.96
LMX1BO60663 RNU6-8-201ENST00000365467 107 ntBASIC2.78□□□□□ -1.96
LMX1BO60663 TSACC-205ENST00000368255 751 ntAPPRIS P1 TSL 1 (best) BASIC2.78□□□□□ -1.96
LMX1BO60663 RNU6-738P-201ENST00000384531 106 ntBASIC2.78□□□□□ -1.96
LMX1BO60663 TRAV7-201ENST00000390429 337 ntAPPRIS P1 BASIC2.78□□□□□ -1.96
LMX1BO60663 AL357075.1-201ENST00000404107 726 ntBASIC2.78□□□□□ -1.96
LMX1BO60663 RNU2-3P-201ENST00000410144 191 ntBASIC2.78□□□□□ -1.96
LMX1BO60663 AC080125.1-201ENST00000414888 684 ntBASIC2.78□□□□□ -1.96
LMX1BO60663 RPL32P35-201ENST00000415214 394 ntBASIC2.78□□□□□ -1.96
LMX1BO60663 AC245054.2-201ENST00000415639 319 ntBASIC2.78□□□□□ -1.96
LMX1BO60663 RPL21P90-201ENST00000415692 466 ntBASIC2.78□□□□□ -1.96
LMX1BO60663 PMCHL1-202ENST00000423102 261 ntBASIC2.78□□□□□ -1.96
LMX1BO60663 RPL23AP69-201ENST00000431134 458 ntBASIC2.78□□□□□ -1.96
LMX1BO60663 AL360169.1-201ENST00000435116 143 ntTSL 5 BASIC2.78□□□□□ -1.96
LMX1BO60663 Z75741.1-201ENST00000446793 314 ntBASIC2.78□□□□□ -1.96
LMX1BO60663 AL445465.2-201ENST00000455530 461 ntTSL 2 BASIC2.78□□□□□ -1.96
LMX1BO60663 AC009468.2-201ENST00000457372 366 ntTSL 5 BASIC2.78□□□□□ -1.96
LMX1BO60663 TH2LCRR-203ENST00000457489 439 ntTSL 3 BASIC2.78□□□□□ -1.96
LMX1BO60663 Y_RNA.631-201ENST00000459607 101 ntBASIC2.78□□□□□ -1.96
LMX1BO60663 AC092059.1-201ENST00000485347 429 ntTSL 3 BASIC2.78□□□□□ -1.96
LMX1BO60663 AC022493.1-201ENST00000492984 337 ntBASIC2.78□□□□□ -1.96
LMX1BO60663 AC025475.1-201ENST00000512939 487 ntTSL 3 BASIC2.78□□□□□ -1.96
LMX1BO60663 AC093303.1-201ENST00000514549 295 ntBASIC2.78□□□□□ -1.96
LMX1BO60663 RNU6-1170P-201ENST00000515974 106 ntBASIC2.78□□□□□ -1.96
LMX1BO60663 RNU6-1213P-201ENST00000517075 94 ntBASIC2.78□□□□□ -1.96
LMX1BO60663 IL7-206ENST00000520269 456 ntTSL 3 BASIC2.78□□□□□ -1.96
LMX1BO60663 CYCSP27-201ENST00000527643 293 ntBASIC2.78□□□□□ -1.96
LMX1BO60663 LINC02350-201ENST00000544419 480 ntTSL 3 BASIC2.78□□□□□ -1.96
LMX1BO60663 AC098826.3-201ENST00000603823 466 ntBASIC2.78□□□□□ -1.96
LMX1BO60663 ATG5-207ENST00000613993 733 ntTSL 1 (best) BASIC2.78□□□□□ -1.96
LMX1BO60663 AL355810.1-201ENST00000614629 552 ntBASIC2.78□□□□□ -1.96
LMX1BO60663 uc_338.22-201ENST00000622722 187 ntBASIC2.78□□□□□ -1.96
LMX1BO60663 AC244517.12-201ENST00000623581 663 ntBASIC2.78□□□□□ -1.96
LMX1BO60663 UEVLD-208ENST00000535484 1963 ntTSL 2 BASIC2.78□□□□□ -1.97
LMX1BO60663 CUL3-204ENST00000409777 3147 ntTSL 1 (best) BASIC2.77□□□□□ -1.97
LMX1BO60663 FIGNL1-202ENST00000395556 3485 ntAPPRIS P1 TSL 2 BASIC2.77□□□□□ -1.97
LMX1BO60663 AC138393.1-203ENST00000327086 343 ntBASIC2.77□□□□□ -1.97
LMX1BO60663 RNU6-562P-201ENST00000362731 107 ntBASIC2.77□□□□□ -1.97
LMX1BO60663 Y_RNA.197-201ENST00000364004 102 ntBASIC2.77□□□□□ -1.97
LMX1BO60663 RNU6-512P-201ENST00000364438 103 ntBASIC2.77□□□□□ -1.97
LMX1BO60663 RNU6-95P-201ENST00000384697 107 ntBASIC2.77□□□□□ -1.97
LMX1BO60663 AL138885.1-201ENST00000405921 675 ntBASIC2.77□□□□□ -1.97
LMX1BO60663 NDUFB4P7-201ENST00000423198 363 ntBASIC2.77□□□□□ -1.97
LMX1BO60663 AC017074.1-201ENST00000424612 561 ntTSL 3 BASIC2.77□□□□□ -1.97
LMX1BO60663 AL592045.1-201ENST00000429867 352 ntBASIC2.77□□□□□ -1.97
LMX1BO60663 HIGD1AP11-201ENST00000438361 280 ntBASIC2.77□□□□□ -1.97
LMX1BO60663 AL137792.2-201ENST00000443484 235 ntBASIC2.77□□□□□ -1.97
LMX1BO60663 RNU6-1332P-201ENST00000516666 104 ntBASIC2.77□□□□□ -1.97
LMX1BO60663 AC136777.1-201ENST00000517765 369 ntTSL 4 BASIC2.77□□□□□ -1.97
LMX1BO60663 AC245166.1-201ENST00000521012 253 ntBASIC2.77□□□□□ -1.97
LMX1BO60663 IGHV3-76-201ENST00000522465 295 ntBASIC2.77□□□□□ -1.97
LMX1BO60663 AL132780.1-202ENST00000548322 591 ntTSL 4 BASIC2.77□□□□□ -1.97
LMX1BO60663 LINC02300-201ENST00000549742 665 ntTSL 4 BASIC2.77□□□□□ -1.97
LMX1BO60663 AC022035.1-201ENST00000579923 302 ntTSL 2 BASIC2.77□□□□□ -1.97
LMX1BO60663 MIR2682-201ENST00000580305 110 ntBASIC2.77□□□□□ -1.97
LMX1BO60663 AC090772.1-201ENST00000583782 507 ntTSL 5 BASIC2.77□□□□□ -1.97
LMX1BO60663 AL161798.1-201ENST00000604630 131 ntBASIC2.77□□□□□ -1.97
LMX1BO60663 AP001836.1-201ENST00000604675 523 ntBASIC2.77□□□□□ -1.97
LMX1BO60663 MACROD2-IT1-202ENST00000605675 575 ntTSL 5 BASIC2.77□□□□□ -1.97
LMX1BO60663 AL591516.1-201ENST00000611326 274 ntBASIC2.77□□□□□ -1.97
LMX1BO60663 CYP3A43-217ENST00000631161 328 ntTSL 5 BASIC2.77□□□□□ -1.97
LMX1BO60663 Z99571.1-201ENST00000636677 394 ntBASIC2.77□□□□□ -1.97
LMX1BO60663 MKLN1-201ENST00000352689 11156 ntAPPRIS P1 TSL 1 (best) BASIC2.77□□□□□ -1.97
LMX1BO60663 TCF12-203ENST00000343827 3956 ntTSL 1 (best) BASIC2.77□□□□□ -1.97
LMX1BO60663 GNAI3-201ENST00000369851 27174 ntAPPRIS P1 TSL 1 (best) BASIC2.76□□□□□ -1.97
LMX1BO60663 DNAH12-208ENST00000495027 12146 ntAPPRIS P1 TSL 5 BASIC2.76□□□□□ -1.97
LMX1BO60663 PIK3C2G-202ENST00000433979 4840 ntAPPRIS P1 TSL 5 BASIC2.76□□□□□ -1.97
LMX1BO60663 RNU6-266P-201ENST00000364225 107 ntBASIC2.76□□□□□ -1.97
LMX1BO60663 RNU6-310P-201ENST00000384655 107 ntBASIC2.76□□□□□ -1.97
LMX1BO60663 MIR606-201ENST00000384851 96 ntBASIC2.76□□□□□ -1.97
LMX1BO60663 MIR1289-1-201ENST00000408836 144 ntBASIC2.76□□□□□ -1.97
LMX1BO60663 Y_RNA.646-201ENST00000410980 101 ntBASIC2.76□□□□□ -1.97
LMX1BO60663 RNU6-607P-201ENST00000411283 108 ntBASIC2.76□□□□□ -1.97
LMX1BO60663 LHFPL3-AS1-203ENST00000417290 950 ntTSL 1 (best) BASIC2.76□□□□□ -1.97
LMX1BO60663 AL353621.1-201ENST00000418219 243 ntBASIC2.76□□□□□ -1.97
LMX1BO60663 AL139396.1-201ENST00000421137 167 ntBASIC2.76□□□□□ -1.97
LMX1BO60663 ZFY-AS1-202ENST00000431145 419 ntTSL 3 BASIC2.76□□□□□ -1.97
LMX1BO60663 MTND4P19-201ENST00000446659 478 ntBASIC2.76□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 100.8 ms