Protein–RNA interactions for Protein: Q9Y3X0

CCDC9, Coiled-coil domain-containing protein 9, humanhuman

Known RBP Predictions only

Length 531 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9Q9Y3X0 OSTCP8-201ENST00000445117 448 ntBASIC4.76□□□□□ -1.65
CCDC9Q9Y3X0 AC019155.3-201ENST00000454957 600 ntTSL 2 BASIC4.76□□□□□ -1.65
CCDC9Q9Y3X0 AC012081.1-201ENST00000462382 477 ntTSL 3 BASIC4.76□□□□□ -1.65
CCDC9Q9Y3X0 AC008871.1-201ENST00000510935 398 ntTSL 3 BASIC4.76□□□□□ -1.65
CCDC9Q9Y3X0 AC010265.1-201ENST00000513509 211 ntBASIC4.76□□□□□ -1.65
CCDC9Q9Y3X0 AC108067.1-201ENST00000514304 215 ntTSL 5 BASIC4.76□□□□□ -1.65
CCDC9Q9Y3X0 AC090568.2-205ENST00000518631 576 ntTSL 4 BASIC4.76□□□□□ -1.65
CCDC9Q9Y3X0 AP005597.4-201ENST00000526762 229 ntBASIC4.76□□□□□ -1.65
CCDC9Q9Y3X0 AP000889.2-201ENST00000532684 490 ntBASIC4.76□□□□□ -1.65
CCDC9Q9Y3X0 AC005668.1-201ENST00000571142 476 ntBASIC4.76□□□□□ -1.65
CCDC9Q9Y3X0 AL670379.10-201ENST00000604330 253 ntBASIC4.76□□□□□ -1.65
CCDC9Q9Y3X0 AL670379.9-201ENST00000605428 253 ntBASIC4.76□□□□□ -1.65
CCDC9Q9Y3X0 MIR6715A-201ENST00000615929 79 ntBASIC4.76□□□□□ -1.65
CCDC9Q9Y3X0 AC159540.2-206ENST00000619371 355 ntTSL 3 BASIC4.76□□□□□ -1.65
CCDC9Q9Y3X0 AC092628.2-201ENST00000622492 339 ntBASIC4.76□□□□□ -1.65
CCDC9Q9Y3X0 U4.7-201ENST00000638126 106 ntBASIC4.76□□□□□ -1.65
CCDC9Q9Y3X0 ABCC9-202ENST00000261201 4650 ntAPPRIS ALT1 TSL 5 BASIC4.76□□□□□ -1.65
CCDC9Q9Y3X0 ATP2C1-202ENST00000359644 3401 ntAPPRIS P3 TSL 1 (best) BASIC4.76□□□□□ -1.65
CCDC9Q9Y3X0 DICER1-203ENST00000526495 10331 ntAPPRIS P1 TSL 5 BASIC4.76□□□□□ -1.65
CCDC9Q9Y3X0 C6orf10-202ENST00000375015 2173 ntAPPRIS ALT2 TSL 5 BASIC4.75□□□□□ -1.65
CCDC9Q9Y3X0 DDX6-206ENST00000534980 4538 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
CCDC9Q9Y3X0 OR9K2-202ENST00000641329 3120 ntAPPRIS P1 BASIC4.75□□□□□ -1.65
CCDC9Q9Y3X0 NR3C1-202ENST00000343796 7286 ntAPPRIS P3 TSL 5 BASIC4.75□□□□□ -1.65
CCDC9Q9Y3X0 RNU6-527P-201ENST00000363425 104 ntBASIC4.75□□□□□ -1.65
CCDC9Q9Y3X0 Y_RNA.303-201ENST00000364998 94 ntBASIC4.75□□□□□ -1.65
CCDC9Q9Y3X0 RNY3P14-201ENST00000384309 102 ntBASIC4.75□□□□□ -1.65
CCDC9Q9Y3X0 SNORD73A-201ENST00000386062 65 ntBASIC4.75□□□□□ -1.65
CCDC9Q9Y3X0 MTND3P8-201ENST00000412909 339 ntBASIC4.75□□□□□ -1.65
CCDC9Q9Y3X0 AL353678.1-201ENST00000422735 741 ntBASIC4.75□□□□□ -1.65
CCDC9Q9Y3X0 RPL27AP5-201ENST00000469428 449 ntBASIC4.75□□□□□ -1.65
CCDC9Q9Y3X0 MAGI1-AS1-201ENST00000472514 591 ntTSL 3 BASIC4.75□□□□□ -1.65
CCDC9Q9Y3X0 AC084198.1-201ENST00000477747 402 ntBASIC4.75□□□□□ -1.65
CCDC9Q9Y3X0 RPL31P61-201ENST00000496160 376 ntBASIC4.75□□□□□ -1.65
CCDC9Q9Y3X0 AC008869.1-201ENST00000510938 442 ntTSL 2 BASIC4.75□□□□□ -1.65
CCDC9Q9Y3X0 AC079209.2-201ENST00000519107 431 ntTSL 3 BASIC4.75□□□□□ -1.65
CCDC9Q9Y3X0 AC114550.2-201ENST00000524008 397 ntTSL 3 BASIC4.75□□□□□ -1.65
CCDC9Q9Y3X0 AP001318.2-201ENST00000533378 492 ntTSL 3 BASIC4.75□□□□□ -1.65
CCDC9Q9Y3X0 AL022345.1-201ENST00000607292 135 ntBASIC4.75□□□□□ -1.65
CCDC9Q9Y3X0 MIR663AHG-231ENST00000609044 590 ntTSL 5 BASIC4.75□□□□□ -1.65
CCDC9Q9Y3X0 MIR7106-201ENST00000612419 65 ntBASIC4.75□□□□□ -1.65
CCDC9Q9Y3X0 THNSL1-201ENST00000376356 3691 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
CCDC9Q9Y3X0 PRKACB-201ENST00000370680 1914 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
CCDC9Q9Y3X0 BCHE-201ENST00000264381 2454 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
CCDC9Q9Y3X0 POSTN-202ENST00000379743 3196 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
CCDC9Q9Y3X0 WDR72-201ENST00000360509 5887 ntAPPRIS P2 TSL 1 (best) BASIC4.74□□□□□ -1.65
CCDC9Q9Y3X0 FNBP1L-203ENST00000370253 3889 ntAPPRIS ALT1 TSL 5 BASIC4.74□□□□□ -1.65
CCDC9Q9Y3X0 RNU6-845P-201ENST00000362578 103 ntBASIC4.74□□□□□ -1.65
CCDC9Q9Y3X0 DEFB125-201ENST00000382410 587 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
CCDC9Q9Y3X0 AL445529.1-201ENST00000398713 389 ntBASIC4.74□□□□□ -1.65
CCDC9Q9Y3X0 AP000936.1-201ENST00000442124 483 ntTSL 5 BASIC4.74□□□□□ -1.65
CCDC9Q9Y3X0 PPP1R2P5-201ENST00000457256 603 ntBASIC4.74□□□□□ -1.65
CCDC9Q9Y3X0 RPL7P43-201ENST00000478876 753 ntBASIC4.74□□□□□ -1.65
CCDC9Q9Y3X0 AC006483.1-201ENST00000487308 313 ntBASIC4.74□□□□□ -1.65
CCDC9Q9Y3X0 AC087341.1-201ENST00000521490 491 ntTSL 2 BASIC4.74□□□□□ -1.65
CCDC9Q9Y3X0 AC100768.1-201ENST00000525512 506 ntTSL 3 BASIC4.74□□□□□ -1.65
CCDC9Q9Y3X0 COPS8P3-201ENST00000526024 482 ntBASIC4.74□□□□□ -1.65
CCDC9Q9Y3X0 CR383656.8-201ENST00000549046 145 ntBASIC4.74□□□□□ -1.65
CCDC9Q9Y3X0 AC026371.1-201ENST00000551867 419 ntBASIC4.74□□□□□ -1.65
CCDC9Q9Y3X0 LINC02164-201ENST00000566684 272 ntTSL 3 BASIC4.74□□□□□ -1.65
CCDC9Q9Y3X0 AL133383.1-201ENST00000569292 901 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
CCDC9Q9Y3X0 AC131274.4-201ENST00000577879 398 ntTSL 3 BASIC4.74□□□□□ -1.65
CCDC9Q9Y3X0 MIR4742-201ENST00000581069 85 ntBASIC4.74□□□□□ -1.65
CCDC9Q9Y3X0 MIR3942-201ENST00000585264 109 ntBASIC4.74□□□□□ -1.65
CCDC9Q9Y3X0 AC020914.4-201ENST00000597690 277 ntBASIC4.74□□□□□ -1.65
CCDC9Q9Y3X0 RPL23AP78-201ENST00000599928 470 ntBASIC4.74□□□□□ -1.65
CCDC9Q9Y3X0 SNORA50A-202ENST00000629536 136 ntBASIC4.74□□□□□ -1.65
CCDC9Q9Y3X0 PRRG1-202ENST00000449135 4481 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
CCDC9Q9Y3X0 DNAH8-202ENST00000359357 13864 ntAPPRIS ALT2 TSL 2 BASIC4.74□□□□□ -1.65
CCDC9Q9Y3X0 AK9-203ENST00000368948 2478 ntTSL 5 BASIC4.73□□□□□ -1.65
CCDC9Q9Y3X0 SPEF2-203ENST00000440995 5964 ntAPPRIS ALT2 TSL 5 BASIC4.73□□□□□ -1.65
CCDC9Q9Y3X0 SYNE2-204ENST00000358025 21842 ntAPPRIS P3 TSL 5 BASIC4.73□□□□□ -1.65
CCDC9Q9Y3X0 SPAG11A-202ENST00000326625 445 ntTSL 5 BASIC4.73□□□□□ -1.65
CCDC9Q9Y3X0 RNU6-827P-201ENST00000365553 106 ntBASIC4.73□□□□□ -1.65
CCDC9Q9Y3X0 RN7SKP32-201ENST00000410167 303 ntBASIC4.73□□□□□ -1.65
CCDC9Q9Y3X0 AC010967.2-201ENST00000418451 333 ntTSL 2 BASIC4.73□□□□□ -1.65
CCDC9Q9Y3X0 AL591043.1-201ENST00000432461 424 ntBASIC4.73□□□□□ -1.65
CCDC9Q9Y3X0 AC124916.1-201ENST00000444020 547 ntBASIC4.73□□□□□ -1.65
CCDC9Q9Y3X0 AC013727.2-201ENST00000447761 545 ntTSL 4 BASIC4.73□□□□□ -1.65
CCDC9Q9Y3X0 AL138900.1-201ENST00000449345 399 ntTSL 3 BASIC4.73□□□□□ -1.65
CCDC9Q9Y3X0 AL034345.2-203ENST00000453417 383 ntTSL 3 BASIC4.73□□□□□ -1.65
CCDC9Q9Y3X0 RNU6-329P-201ENST00000459618 107 ntBASIC4.73□□□□□ -1.65
CCDC9Q9Y3X0 RPL31P41-201ENST00000477967 372 ntBASIC4.73□□□□□ -1.65
CCDC9Q9Y3X0 AC012055.2-201ENST00000504167 335 ntTSL 3 BASIC4.73□□□□□ -1.65
CCDC9Q9Y3X0 AK3P2-201ENST00000507976 429 ntBASIC4.73□□□□□ -1.65
CCDC9Q9Y3X0 AC110799.1-201ENST00000509098 449 ntTSL 3 BASIC4.73□□□□□ -1.65
CCDC9Q9Y3X0 AC134698.4-201ENST00000523451 826 ntBASIC4.73□□□□□ -1.65
CCDC9Q9Y3X0 AC104576.1-201ENST00000524225 88 ntBASIC4.73□□□□□ -1.65
CCDC9Q9Y3X0 AC013762.1-201ENST00000531136 467 ntTSL 3 BASIC4.73□□□□□ -1.65
CCDC9Q9Y3X0 AP002892.1-201ENST00000537727 550 ntTSL 4 BASIC4.73□□□□□ -1.65
CCDC9Q9Y3X0 AL049775.2-201ENST00000557547 558 ntTSL 4 BASIC4.73□□□□□ -1.65
CCDC9Q9Y3X0 LINC01195-201ENST00000570118 451 ntTSL 3 BASIC4.73□□□□□ -1.65
CCDC9Q9Y3X0 AC006023.1-201ENST00000603944 259 ntBASIC4.73□□□□□ -1.65
CCDC9Q9Y3X0 AC022017.1-201ENST00000608793 559 ntTSL 4 BASIC4.73□□□□□ -1.65
CCDC9Q9Y3X0 PCDH11X-208ENST00000504220 4017 ntAPPRIS ALT2 TSL 1 (best) BASIC4.73□□□□□ -1.65
CCDC9Q9Y3X0 NDST3-201ENST00000296499 5961 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
CCDC9Q9Y3X0 TBC1D31-214ENST00000522420 3167 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
CCDC9Q9Y3X0 RNA5SP432-201ENST00000362480 116 ntBASIC4.72□□□□□ -1.65
CCDC9Q9Y3X0 RNU6-1329P-201ENST00000365664 107 ntBASIC4.72□□□□□ -1.65
CCDC9Q9Y3X0 Z98941.1-201ENST00000407764 100 ntBASIC4.72□□□□□ -1.65
CCDC9Q9Y3X0 AL445989.1-202ENST00000418943 776 ntTSL 2 BASIC4.72□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 386.7 ms