Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 SNORA44.1-201ENST00000517031 108 ntBASIC0.98□□□□□ -2.25
SCN3AQ9NY46 AC034114.1-201ENST00000520293 285 ntBASIC0.98□□□□□ -2.25
SCN3AQ9NY46 ZNF84-205ENST00000535439 647 ntTSL 5 BASIC0.98□□□□□ -2.25
SCN3AQ9NY46 AC092138.2-201ENST00000563811 428 ntTSL 5 BASIC0.98□□□□□ -2.25
SCN3AQ9NY46 MIR6078-201ENST00000611069 100 ntBASIC0.98□□□□□ -2.25
SCN3AQ9NY46 AC003001.2-201ENST00000616294 831 ntBASIC0.98□□□□□ -2.25
SCN3AQ9NY46 CYSLTR1-203ENST00000614798 2681 ntAPPRIS P1 TSL 1 (best) BASIC0.97□□□□□ -2.25
SCN3AQ9NY46 SNORA62.1-201ENST00000364287 154 ntBASIC0.97□□□□□ -2.25
SCN3AQ9NY46 Y_RNA.311-201ENST00000365068 96 ntBASIC0.97□□□□□ -2.25
SCN3AQ9NY46 OR51A4-201ENST00000380373 1002 ntAPPRIS P1 BASIC0.97□□□□□ -2.25
SCN3AQ9NY46 MIR613-201ENST00000385248 95 ntBASIC0.97□□□□□ -2.25
SCN3AQ9NY46 TIMM9P2-201ENST00000419324 266 ntBASIC0.97□□□□□ -2.25
SCN3AQ9NY46 AL160275.3-201ENST00000423876 471 ntBASIC0.97□□□□□ -2.25
SCN3AQ9NY46 NAALADL2-AS1-201ENST00000426315 804 ntTSL 5 BASIC0.97□□□□□ -2.25
SCN3AQ9NY46 AC005094.1-201ENST00000440420 368 ntBASIC0.97□□□□□ -2.25
SCN3AQ9NY46 HSPE1P24-201ENST00000450782 238 ntBASIC0.97□□□□□ -2.25
SCN3AQ9NY46 AC005538.1-201ENST00000455991 594 ntTSL 3 BASIC0.97□□□□□ -2.25
SCN3AQ9NY46 SNORD97-201ENST00000459187 142 ntBASIC0.97□□□□□ -2.25
SCN3AQ9NY46 RPL30P12-201ENST00000474666 353 ntBASIC0.97□□□□□ -2.25
SCN3AQ9NY46 AL121594.1-201ENST00000475906 575 ntBASIC0.97□□□□□ -2.25
SCN3AQ9NY46 AC011257.1-201ENST00000519048 281 ntTSL 3 BASIC0.97□□□□□ -2.25
SCN3AQ9NY46 CYB5AP5-201ENST00000549779 389 ntBASIC0.97□□□□□ -2.25
SCN3AQ9NY46 AL136520.1-202ENST00000555494 763 ntBASIC0.97□□□□□ -2.25
SCN3AQ9NY46 AC025580.2-205ENST00000559960 552 ntTSL 4 BASIC0.97□□□□□ -2.25
SCN3AQ9NY46 MIR3167-201ENST00000579623 85 ntBASIC0.97□□□□□ -2.25
SCN3AQ9NY46 SNRPGP17-201ENST00000603780 214 ntBASIC0.97□□□□□ -2.25
SCN3AQ9NY46 AL050343.2-201ENST00000607338 280 ntBASIC0.97□□□□□ -2.25
SCN3AQ9NY46 DDX43P2-201ENST00000604753 1354 ntBASIC0.97□□□□□ -2.25
SCN3AQ9NY46 CDR1-202ENST00000625883 1485 ntBASIC0.97□□□□□ -2.25
SCN3AQ9NY46 FTH1P15-201ENST00000406984 280 ntBASIC0.96□□□□□ -2.26
SCN3AQ9NY46 TPMTP3-201ENST00000411928 735 ntBASIC0.96□□□□□ -2.26
SCN3AQ9NY46 AC097463.2-201ENST00000421074 142 ntBASIC0.96□□□□□ -2.26
SCN3AQ9NY46 AC019178.2-201ENST00000423595 505 ntBASIC0.96□□□□□ -2.26
SCN3AQ9NY46 ISCA1P1-201ENST00000426679 387 ntBASIC0.96□□□□□ -2.26
SCN3AQ9NY46 MTND1P28-201ENST00000435623 950 ntBASIC0.96□□□□□ -2.26
SCN3AQ9NY46 USP9YP22-201ENST00000438971 294 ntBASIC0.96□□□□□ -2.26
SCN3AQ9NY46 PTGES3P1-201ENST00000439531 483 ntBASIC0.96□□□□□ -2.26
SCN3AQ9NY46 AC245102.2-201ENST00000448956 180 ntBASIC0.96□□□□□ -2.26
SCN3AQ9NY46 ZNF886P-201ENST00000450781 723 ntBASIC0.96□□□□□ -2.26
SCN3AQ9NY46 SPIN4-AS1-201ENST00000451979 426 ntTSL 2 BASIC0.96□□□□□ -2.26
SCN3AQ9NY46 LINC01203-202ENST00000456091 476 ntTSL 3 BASIC0.96□□□□□ -2.26
SCN3AQ9NY46 TMEM212-IT1-201ENST00000456146 470 ntTSL 3 BASIC0.96□□□□□ -2.26
SCN3AQ9NY46 RPS29P1-201ENST00000465274 159 ntBASIC0.96□□□□□ -2.26
SCN3AQ9NY46 PGRMC2-204ENST00000503872 1028 ntTSL 3 BASIC0.96□□□□□ -2.26
SCN3AQ9NY46 ARL2BPP4-201ENST00000506854 471 ntBASIC0.96□□□□□ -2.26
SCN3AQ9NY46 AC008628.1-201ENST00000508663 265 ntBASIC0.96□□□□□ -2.26
SCN3AQ9NY46 AC023632.1-201ENST00000518463 375 ntBASIC0.96□□□□□ -2.26
SCN3AQ9NY46 AP003128.1-201ENST00000531414 448 ntTSL 2 BASIC0.96□□□□□ -2.26
SCN3AQ9NY46 AC008083.1-201ENST00000547748 663 ntTSL 2 BASIC0.96□□□□□ -2.26
SCN3AQ9NY46 AL137100.2-201ENST00000555786 315 ntBASIC0.96□□□□□ -2.26
SCN3AQ9NY46 AC087045.1-201ENST00000605856 382 ntBASIC0.96□□□□□ -2.26
SCN3AQ9NY46 AC022202.1-201ENST00000613515 211 ntBASIC0.96□□□□□ -2.26
SCN3AQ9NY46 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC0.96□□□□□ -2.26
SCN3AQ9NY46 FKTN-204ENST00000448551 1700 ntTSL 2 BASIC0.96□□□□□ -2.26
SCN3AQ9NY46 MIR518A2-201ENST00000384966 87 ntBASIC0.96□□□□□ -2.26
SCN3AQ9NY46 AC068533.2-201ENST00000411872 306 ntBASIC0.96□□□□□ -2.26
SCN3AQ9NY46 AC004870.3-202ENST00000412996 432 ntTSL 3 BASIC0.96□□□□□ -2.26
SCN3AQ9NY46 AL449283.1-202ENST00000418249 604 ntBASIC0.96□□□□□ -2.26
SCN3AQ9NY46 GRK5-IT1-201ENST00000421206 400 ntTSL 3 BASIC0.96□□□□□ -2.26
SCN3AQ9NY46 AC025038.1-201ENST00000433249 336 ntTSL 3 BASIC0.96□□□□□ -2.26
SCN3AQ9NY46 SCEL-AS1-201ENST00000456280 493 ntTSL 3 BASIC0.96□□□□□ -2.26
SCN3AQ9NY46 AL358176.1-201ENST00000457477 357 ntTSL 5 BASIC0.96□□□□□ -2.26
SCN3AQ9NY46 AC111194.2-201ENST00000511222 455 ntTSL 5 BASIC0.96□□□□□ -2.26
SCN3AQ9NY46 AC011405.1-201ENST00000514207 248 ntTSL 3 BASIC0.96□□□□□ -2.26
SCN3AQ9NY46 MTCO3P27-201ENST00000514397 196 ntBASIC0.96□□□□□ -2.26
SCN3AQ9NY46 AC010261.1-201ENST00000514411 457 ntTSL 5 BASIC0.96□□□□□ -2.26
SCN3AQ9NY46 AC025871.1-202ENST00000518819 432 ntTSL 3 BASIC0.96□□□□□ -2.26
SCN3AQ9NY46 AC104417.1-201ENST00000523974 751 ntBASIC0.96□□□□□ -2.26
SCN3AQ9NY46 HMSD-204ENST00000526932 162 ntTSL 3 BASIC0.96□□□□□ -2.26
SCN3AQ9NY46 AP000907.2-201ENST00000530827 353 ntBASIC0.96□□□□□ -2.26
SCN3AQ9NY46 POC1B-211ENST00000549504 581 ntTSL 5 BASIC0.96□□□□□ -2.26
SCN3AQ9NY46 AC066612.2-201ENST00000559875 695 ntTSL 2 BASIC0.96□□□□□ -2.26
SCN3AQ9NY46 LINC01897-203ENST00000591503 369 ntTSL 2 BASIC0.96□□□□□ -2.26
SCN3AQ9NY46 AC098483.2-201ENST00000603158 454 ntBASIC0.96□□□□□ -2.26
SCN3AQ9NY46 AC004987.4-201ENST00000603383 338 ntBASIC0.96□□□□□ -2.26
SCN3AQ9NY46 AL078604.3-201ENST00000615580 211 ntBASIC0.96□□□□□ -2.26
SCN3AQ9NY46 AL359740.1-201ENST00000624340 592 ntBASIC0.96□□□□□ -2.26
SCN3AQ9NY46 AP003485.1-201ENST00000625093 753 ntBASIC0.96□□□□□ -2.26
SCN3AQ9NY46 UGP2-230ENST00000626380 276 ntTSL 5 BASIC0.96□□□□□ -2.26
SCN3AQ9NY46 SERPINI2-209ENST00000616363 1769 ntTSL 5 BASIC0.95□□□□□ -2.26
SCN3AQ9NY46 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC0.95□□□□□ -2.26
SCN3AQ9NY46 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC0.95□□□□□ -2.26
SCN3AQ9NY46 AL589826.1-201ENST00000340697 249 ntBASIC0.95□□□□□ -2.26
SCN3AQ9NY46 RNU6-236P-201ENST00000363886 106 ntBASIC0.95□□□□□ -2.26
SCN3AQ9NY46 SNORA18.2-201ENST00000383865 132 ntBASIC0.95□□□□□ -2.26
SCN3AQ9NY46 AL136369.2-201ENST00000420825 537 ntTSL 3 BASIC0.95□□□□□ -2.26
SCN3AQ9NY46 AC006369.2-201ENST00000431712 384 ntTSL 3 BASIC0.95□□□□□ -2.26
SCN3AQ9NY46 MTND2P29-201ENST00000438595 412 ntBASIC0.95□□□□□ -2.26
SCN3AQ9NY46 LINC01758-201ENST00000448001 458 ntTSL 3 BASIC0.95□□□□□ -2.26
SCN3AQ9NY46 RPL23AP35-201ENST00000451906 501 ntBASIC0.95□□□□□ -2.26
SCN3AQ9NY46 OR6C5P-201ENST00000452388 923 ntBASIC0.95□□□□□ -2.26
SCN3AQ9NY46 LINC02064-201ENST00000506492 470 ntTSL 5 BASIC0.95□□□□□ -2.26
SCN3AQ9NY46 RNU6-927P-201ENST00000516199 100 ntBASIC0.95□□□□□ -2.26
SCN3AQ9NY46 CR383656.8-201ENST00000549046 145 ntBASIC0.95□□□□□ -2.26
SCN3AQ9NY46 AL157871.3-201ENST00000557231 293 ntBASIC0.95□□□□□ -2.26
SCN3AQ9NY46 AL157938.2-201ENST00000587264 894 ntTSL 5 BASIC0.95□□□□□ -2.26
SCN3AQ9NY46 AC099811.4-201ENST00000592536 496 ntTSL 2 BASIC0.95□□□□□ -2.26
SCN3AQ9NY46 VN1R107P-201ENST00000601784 209 ntBASIC0.95□□□□□ -2.26
SCN3AQ9NY46 AL354696.1-201ENST00000614652 497 ntBASIC0.95□□□□□ -2.26
SCN3AQ9NY46 ZNRD1-AS1_2.5-201ENST00000614729 76 ntBASIC0.95□□□□□ -2.26
Retrieved 100 of 98,524 protein–RNA pairs in 116.3 ms