Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 RPL30P15-201ENST00000457129 321 ntBASIC3.59□□□□□ -1.83
TDP1Q9NUW8 Y_RNA.639-201ENST00000458981 102 ntBASIC3.59□□□□□ -1.83
TDP1Q9NUW8 RPL23AP62-201ENST00000463396 453 ntBASIC3.59□□□□□ -1.83
TDP1Q9NUW8 RPL23AP45-201ENST00000476406 468 ntBASIC3.59□□□□□ -1.83
TDP1Q9NUW8 AC096721.1-201ENST00000513540 552 ntTSL 4 BASIC3.59□□□□□ -1.83
TDP1Q9NUW8 AC092747.1-202ENST00000540595 380 ntTSL 5 BASIC3.59□□□□□ -1.83
TDP1Q9NUW8 AC011602.1-201ENST00000546484 331 ntBASIC3.59□□□□□ -1.83
TDP1Q9NUW8 AL442663.2-201ENST00000554385 511 ntBASIC3.59□□□□□ -1.83
TDP1Q9NUW8 AP006219.1-201ENST00000580258 472 ntTSL 3 BASIC3.59□□□□□ -1.83
TDP1Q9NUW8 AC018462.2-201ENST00000605375 395 ntBASIC3.59□□□□□ -1.83
TDP1Q9NUW8 AL121917.1-203ENST00000605534 577 ntBASIC3.59□□□□□ -1.83
TDP1Q9NUW8 AP000654.2-201ENST00000605633 586 ntBASIC3.59□□□□□ -1.83
TDP1Q9NUW8 AC009229.3-201ENST00000608056 282 ntBASIC3.59□□□□□ -1.83
TDP1Q9NUW8 AC138627.2-201ENST00000624202 601 ntBASIC3.59□□□□□ -1.83
TDP1Q9NUW8 IDE-202ENST00000371581 4480 ntTSL 2 BASIC3.59□□□□□ -1.83
TDP1Q9NUW8 ST7-AS2-206ENST00000456577 1351 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
TDP1Q9NUW8 ERBIN-212ENST00000508515 4374 ntTSL 5 BASIC3.59□□□□□ -1.84
TDP1Q9NUW8 SULT1B1-201ENST00000310613 7115 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.84
TDP1Q9NUW8 AC093908.1-201ENST00000623125 8092 ntBASIC3.59□□□□□ -1.84
TDP1Q9NUW8 MFSD8-233ENST00000641482 4860 ntBASIC3.59□□□□□ -1.84
TDP1Q9NUW8 HSPA4L-202ENST00000505726 2639 ntTSL 2 BASIC3.58□□□□□ -1.84
TDP1Q9NUW8 AC008505.1-204ENST00000637363 2714 ntTSL 5 BASIC3.58□□□□□ -1.84
TDP1Q9NUW8 MT-ND5-201ENST00000361567 1812 ntAPPRIS P1 BASIC3.58□□□□□ -1.84
TDP1Q9NUW8 AL033397.1-201ENST00000502390 3653 ntTSL 2 BASIC3.58□□□□□ -1.84
TDP1Q9NUW8 DMXL1-201ENST00000311085 11072 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
TDP1Q9NUW8 CNOT6L-201ENST00000504123 8843 ntAPPRIS P1 TSL 2 BASIC3.58□□□□□ -1.84
TDP1Q9NUW8 ERBIN-203ENST00000380938 4701 ntTSL 2 BASIC3.58□□□□□ -1.84
TDP1Q9NUW8 MIR369-201ENST00000362155 70 ntBASIC3.58□□□□□ -1.84
TDP1Q9NUW8 SNORA63-201ENST00000363450 132 ntBASIC3.58□□□□□ -1.84
TDP1Q9NUW8 Y_RNA.151-201ENST00000363566 112 ntBASIC3.58□□□□□ -1.84
TDP1Q9NUW8 Y_RNA.187-201ENST00000363918 113 ntBASIC3.58□□□□□ -1.84
TDP1Q9NUW8 Z98749.2-208ENST00000381646 500 ntBASIC3.58□□□□□ -1.84
TDP1Q9NUW8 RNU1-73P-201ENST00000383971 164 ntBASIC3.58□□□□□ -1.84
TDP1Q9NUW8 RNU6-310P-201ENST00000384655 107 ntBASIC3.58□□□□□ -1.84
TDP1Q9NUW8 SNORA1.3-201ENST00000384676 136 ntBASIC3.58□□□□□ -1.84
TDP1Q9NUW8 MIR888-201ENST00000401186 77 ntBASIC3.58□□□□□ -1.84
TDP1Q9NUW8 AL138878.1-201ENST00000405131 347 ntBASIC3.58□□□□□ -1.84
TDP1Q9NUW8 RNU6ATAC10P-201ENST00000408635 111 ntBASIC3.58□□□□□ -1.84
TDP1Q9NUW8 Y_RNA.594-201ENST00000410373 140 ntBASIC3.58□□□□□ -1.84
TDP1Q9NUW8 RNU6-1050P-201ENST00000410388 107 ntBASIC3.58□□□□□ -1.84
TDP1Q9NUW8 RPL26P27-201ENST00000414397 437 ntBASIC3.58□□□□□ -1.84
TDP1Q9NUW8 AC017079.2-201ENST00000416102 485 ntBASIC3.58□□□□□ -1.84
TDP1Q9NUW8 TTTY8-202ENST00000426035 518 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
TDP1Q9NUW8 ATP6V0E1P4-201ENST00000427294 242 ntBASIC3.58□□□□□ -1.84
TDP1Q9NUW8 GPC6-AS2-201ENST00000445540 587 ntTSL 5 BASIC3.58□□□□□ -1.84
TDP1Q9NUW8 LINC01564-201ENST00000448327 566 ntTSL 3 BASIC3.58□□□□□ -1.84
TDP1Q9NUW8 MTATP6P7-201ENST00000453315 681 ntBASIC3.58□□□□□ -1.84
TDP1Q9NUW8 AC114501.3-201ENST00000453648 164 ntTSL 5 BASIC3.58□□□□□ -1.84
TDP1Q9NUW8 TTTY8B-202ENST00000455570 518 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
TDP1Q9NUW8 ELOCP24-201ENST00000456370 334 ntBASIC3.58□□□□□ -1.84
TDP1Q9NUW8 snoU109.2-201ENST00000459316 135 ntBASIC3.58□□□□□ -1.84
TDP1Q9NUW8 AC012081.1-201ENST00000462382 477 ntTSL 3 BASIC3.58□□□□□ -1.84
TDP1Q9NUW8 MTCYBP40-201ENST00000509390 1135 ntBASIC3.58□□□□□ -1.84
TDP1Q9NUW8 AC093303.1-201ENST00000514549 295 ntBASIC3.58□□□□□ -1.84
TDP1Q9NUW8 Y_RNA.670-201ENST00000516255 105 ntBASIC3.58□□□□□ -1.84
TDP1Q9NUW8 RN7SKP83-201ENST00000516512 178 ntBASIC3.58□□□□□ -1.84
TDP1Q9NUW8 Y_RNA.708-201ENST00000516950 96 ntBASIC3.58□□□□□ -1.84
TDP1Q9NUW8 HIGD1AP1-201ENST00000550979 275 ntBASIC3.58□□□□□ -1.84
TDP1Q9NUW8 AC011477.3-201ENST00000585571 403 ntTSL 5 BASIC3.58□□□□□ -1.84
TDP1Q9NUW8 AC006557.5-201ENST00000603126 811 ntBASIC3.58□□□□□ -1.84
TDP1Q9NUW8 AC008121.1-201ENST00000603244 268 ntBASIC3.58□□□□□ -1.84
TDP1Q9NUW8 HSPE1P7-201ENST00000604681 321 ntBASIC3.58□□□□□ -1.84
TDP1Q9NUW8 YPEL5P2-201ENST00000605553 359 ntBASIC3.58□□□□□ -1.84
TDP1Q9NUW8 AL080274.1-201ENST00000605565 220 ntBASIC3.58□□□□□ -1.84
TDP1Q9NUW8 AL157817.1-201ENST00000614264 790 ntBASIC3.58□□□□□ -1.84
TDP1Q9NUW8 AC104971.4-201ENST00000622763 249 ntTSL 5 BASIC3.58□□□□□ -1.84
TDP1Q9NUW8 OR4C16-201ENST00000623907 933 ntAPPRIS P1 BASIC3.58□□□□□ -1.84
TDP1Q9NUW8 KIAA1107-203ENST00000637221 4337 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
TDP1Q9NUW8 C2orf78-201ENST00000409561 3045 ntAPPRIS P1 TSL 2 BASIC3.58□□□□□ -1.84
TDP1Q9NUW8 ADAM29-211ENST00000514159 3010 ntAPPRIS P1 TSL 4 BASIC3.58□□□□□ -1.84
TDP1Q9NUW8 AGTR1-206ENST00000474935 1795 ntAPPRIS P1 TSL 3 BASIC3.58□□□□□ -1.84
TDP1Q9NUW8 USP9Y-201ENST00000338981 10036 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
TDP1Q9NUW8 BAZ2B-204ENST00000392783 8289 ntAPPRIS P1 TSL 5 BASIC3.57□□□□□ -1.84
TDP1Q9NUW8 SRP72P2-201ENST00000344851 1979 ntBASIC3.57□□□□□ -1.84
TDP1Q9NUW8 Y_RNA.146-201ENST00000363549 102 ntBASIC3.57□□□□□ -1.84
TDP1Q9NUW8 HMGN2P8-201ENST00000391458 268 ntBASIC3.57□□□□□ -1.84
TDP1Q9NUW8 Y_RNA.646-201ENST00000410980 101 ntBASIC3.57□□□□□ -1.84
TDP1Q9NUW8 AL030996.1-201ENST00000411430 235 ntBASIC3.57□□□□□ -1.84
TDP1Q9NUW8 Z92545.1-201ENST00000411782 234 ntBASIC3.57□□□□□ -1.84
TDP1Q9NUW8 Z99755.1-201ENST00000414048 380 ntBASIC3.57□□□□□ -1.84
TDP1Q9NUW8 AL159169.1-201ENST00000421119 127 ntBASIC3.57□□□□□ -1.84
TDP1Q9NUW8 AC099548.1-201ENST00000421443 426 ntBASIC3.57□□□□□ -1.84
TDP1Q9NUW8 RPL31P12-201ENST00000422587 358 ntBASIC3.57□□□□□ -1.84
TDP1Q9NUW8 AC006989.1-201ENST00000427212 131 ntBASIC3.57□□□□□ -1.84
TDP1Q9NUW8 USP9YP30-201ENST00000430729 455 ntBASIC3.57□□□□□ -1.84
TDP1Q9NUW8 AL031274.1-201ENST00000450334 232 ntBASIC3.57□□□□□ -1.84
TDP1Q9NUW8 SNORD5.1-201ENST00000458800 75 ntBASIC3.57□□□□□ -1.84
TDP1Q9NUW8 FMNL2-202ENST00000475377 3648 ntTSL 5 BASIC3.57□□□□□ -1.84
TDP1Q9NUW8 AC018437.1-201ENST00000492214 406 ntBASIC3.57□□□□□ -1.84
TDP1Q9NUW8 LINC02377-201ENST00000500169 450 ntTSL 3 BASIC3.57□□□□□ -1.84
TDP1Q9NUW8 AC113155.1-201ENST00000511141 769 ntBASIC3.57□□□□□ -1.84
TDP1Q9NUW8 LINC02122-201ENST00000511395 577 ntTSL 4 BASIC3.57□□□□□ -1.84
TDP1Q9NUW8 SCARNA15.1-201ENST00000516384 125 ntBASIC3.57□□□□□ -1.84
TDP1Q9NUW8 Y_RNA.687-201ENST00000516558 91 ntBASIC3.57□□□□□ -1.84
TDP1Q9NUW8 AP003072.1-201ENST00000531740 145 ntBASIC3.57□□□□□ -1.84
TDP1Q9NUW8 OOSP2-203ENST00000532905 496 ntAPPRIS ALT2 TSL 3 BASIC3.57□□□□□ -1.84
TDP1Q9NUW8 AC026894.1-202ENST00000533843 477 ntTSL 5 BASIC3.57□□□□□ -1.84
TDP1Q9NUW8 AL132780.1-202ENST00000548322 591 ntTSL 4 BASIC3.57□□□□□ -1.84
TDP1Q9NUW8 TRAV32-201ENST00000553993 340 ntBASIC3.57□□□□□ -1.84
TDP1Q9NUW8 AC020661.2-201ENST00000560114 134 ntBASIC3.57□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 116.6 ms