Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 RICTOR-202ENST00000357387 9543 ntAPPRIS P1 TSL 1 (best) BASIC2.32□□□□□ -2.04
HDDC3Q8N4P3 EYS-211ENST00000503581 10589 ntAPPRIS P3 TSL 5 BASIC2.32□□□□□ -2.04
HDDC3Q8N4P3 MTND5P6-201ENST00000422338 1798 ntBASIC2.32□□□□□ -2.04
HDDC3Q8N4P3 LINC00305-201ENST00000323355 873 ntTSL 1 (best) BASIC2.32□□□□□ -2.04
HDDC3Q8N4P3 RNU1-72P-201ENST00000362976 153 ntBASIC2.32□□□□□ -2.04
HDDC3Q8N4P3 TSHB-202ENST00000369517 474 ntAPPRIS P1 TSL 1 (best) BASIC2.32□□□□□ -2.04
HDDC3Q8N4P3 RNU6-641P-201ENST00000384006 107 ntBASIC2.32□□□□□ -2.04
HDDC3Q8N4P3 SNORA75B-201ENST00000384053 137 ntBASIC2.32□□□□□ -2.04
HDDC3Q8N4P3 AL589872.1-201ENST00000426602 288 ntBASIC2.32□□□□□ -2.04
HDDC3Q8N4P3 RPS15AP28-201ENST00000435088 386 ntBASIC2.32□□□□□ -2.04
HDDC3Q8N4P3 AL590399.3-201ENST00000438072 543 ntTSL 5 BASIC2.32□□□□□ -2.04
HDDC3Q8N4P3 AC055764.1-201ENST00000454526 473 ntTSL 3 BASIC2.32□□□□□ -2.04
HDDC3Q8N4P3 AC079349.1-201ENST00000509096 589 ntTSL 2 BASIC2.32□□□□□ -2.04
HDDC3Q8N4P3 VCAN-AS1-201ENST00000512090 424 ntTSL 3 BASIC2.32□□□□□ -2.04
HDDC3Q8N4P3 AC108449.1-202ENST00000517632 478 ntTSL 3 BASIC2.32□□□□□ -2.04
HDDC3Q8N4P3 MTCYBP20-201ENST00000524239 1129 ntBASIC2.32□□□□□ -2.04
HDDC3Q8N4P3 CYCSP26-201ENST00000534107 320 ntBASIC2.32□□□□□ -2.04
HDDC3Q8N4P3 CCDC7-208ENST00000537047 657 ntAPPRIS ALT2 TSL 1 (best) BASIC2.32□□□□□ -2.04
HDDC3Q8N4P3 CCDC7-209ENST00000539197 581 ntAPPRIS ALT2 TSL 1 (best) BASIC2.32□□□□□ -2.04
HDDC3Q8N4P3 SNRPGP18-201ENST00000553000 214 ntBASIC2.32□□□□□ -2.04
HDDC3Q8N4P3 MIR548AC-201ENST00000585049 88 ntBASIC2.32□□□□□ -2.04
HDDC3Q8N4P3 AC009977.1-201ENST00000586015 570 ntBASIC2.32□□□□□ -2.04
HDDC3Q8N4P3 AC112191.3-201ENST00000604371 277 ntBASIC2.32□□□□□ -2.04
HDDC3Q8N4P3 AL022154.1-201ENST00000604698 785 ntBASIC2.32□□□□□ -2.04
HDDC3Q8N4P3 AC018638.7-201ENST00000605836 1114 ntBASIC2.32□□□□□ -2.04
HDDC3Q8N4P3 AL160408.5-201ENST00000607759 526 ntTSL 4 BASIC2.32□□□□□ -2.04
HDDC3Q8N4P3 AC093788.1-201ENST00000609356 927 ntBASIC2.32□□□□□ -2.04
HDDC3Q8N4P3 AC138749.5-201ENST00000611461 208 ntBASIC2.32□□□□□ -2.04
HDDC3Q8N4P3 AC012409.4-201ENST00000612923 249 ntBASIC2.32□□□□□ -2.04
HDDC3Q8N4P3 AC116165.2-201ENST00000616705 206 ntBASIC2.32□□□□□ -2.04
HDDC3Q8N4P3 AC008121.3-201ENST00000618726 433 ntBASIC2.32□□□□□ -2.04
HDDC3Q8N4P3 MIR3529-201ENST00000637713 78 ntBASIC2.32□□□□□ -2.04
HDDC3Q8N4P3 XPO4-202ENST00000400602 9884 ntAPPRIS ALT1 TSL 5 BASIC2.32□□□□□ -2.04
HDDC3Q8N4P3 ZDBF2-202ENST00000611847 9890 ntTSL 5 BASIC2.32□□□□□ -2.04
HDDC3Q8N4P3 RNY1P12-201ENST00000364251 105 ntBASIC2.31□□□□□ -2.04
HDDC3Q8N4P3 Y_RNA.238-201ENST00000364441 102 ntBASIC2.31□□□□□ -2.04
HDDC3Q8N4P3 RNU6-39P-201ENST00000384344 107 ntBASIC2.31□□□□□ -2.04
HDDC3Q8N4P3 CISD1P1-201ENST00000393907 327 ntBASIC2.31□□□□□ -2.04
HDDC3Q8N4P3 RNA5SP247-201ENST00000411181 105 ntBASIC2.31□□□□□ -2.04
HDDC3Q8N4P3 AC127391.1-201ENST00000411737 98 ntBASIC2.31□□□□□ -2.04
HDDC3Q8N4P3 AL627311.1-201ENST00000431514 115 ntBASIC2.31□□□□□ -2.04
HDDC3Q8N4P3 AL354936.1-201ENST00000441521 649 ntTSL 5 BASIC2.31□□□□□ -2.04
HDDC3Q8N4P3 SFTA1P-203ENST00000446372 693 ntTSL 1 (best) BASIC2.31□□□□□ -2.04
HDDC3Q8N4P3 CSN1S2AP-201ENST00000451783 779 ntTSL 1 (best) BASIC2.31□□□□□ -2.04
HDDC3Q8N4P3 MTAPP1-201ENST00000489154 819 ntBASIC2.31□□□□□ -2.04
HDDC3Q8N4P3 AC116337.1-201ENST00000509680 687 ntBASIC2.31□□□□□ -2.04
HDDC3Q8N4P3 RNU6-123P-201ENST00000516163 102 ntBASIC2.31□□□□□ -2.04
HDDC3Q8N4P3 MYL12A-202ENST00000536605 899 ntAPPRIS P1 TSL 1 (best) BASIC2.31□□□□□ -2.04
HDDC3Q8N4P3 AC105137.2-201ENST00000569073 466 ntBASIC2.31□□□□□ -2.04
HDDC3Q8N4P3 MYL12A-209ENST00000580887 899 ntTSL 1 (best) BASIC2.31□□□□□ -2.04
HDDC3Q8N4P3 MIR5007-201ENST00000583098 95 ntBASIC2.31□□□□□ -2.04
HDDC3Q8N4P3 BNIP3P30-201ENST00000601184 574 ntBASIC2.31□□□□□ -2.04
HDDC3Q8N4P3 DEFB131E-202ENST00000602581 683 ntBASIC2.31□□□□□ -2.04
HDDC3Q8N4P3 AC073410.2-201ENST00000603240 332 ntBASIC2.31□□□□□ -2.04
HDDC3Q8N4P3 AL139286.2-201ENST00000606838 396 ntBASIC2.31□□□□□ -2.04
HDDC3Q8N4P3 AC026523.1-201ENST00000617221 490 ntTSL 5 BASIC2.31□□□□□ -2.04
HDDC3Q8N4P3 RGS13-201ENST00000391995 1505 ntAPPRIS P1 TSL 1 (best) BASIC2.31□□□□□ -2.04
HDDC3Q8N4P3 RGS13-204ENST00000543215 1518 ntAPPRIS P1 TSL 1 (best) BASIC2.31□□□□□ -2.04
HDDC3Q8N4P3 SENP7-206ENST00000394094 4703 ntAPPRIS ALT2 TSL 1 (best) BASIC2.31□□□□□ -2.04
HDDC3Q8N4P3 RBBP8P1-201ENST00000449447 1844 ntBASIC2.31□□□□□ -2.04
HDDC3Q8N4P3 ZNF451-208ENST00000491832 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC2.3□□□□□ -2.04
HDDC3Q8N4P3 MIR21-201ENST00000362134 72 ntBASIC2.3□□□□□ -2.04
HDDC3Q8N4P3 RNU5E-1-201ENST00000362477 120 ntBASIC2.3□□□□□ -2.04
HDDC3Q8N4P3 RNU6-1159P-201ENST00000362933 107 ntBASIC2.3□□□□□ -2.04
HDDC3Q8N4P3 RNU4-1-201ENST00000363925 141 ntBASIC2.3□□□□□ -2.04
HDDC3Q8N4P3 MIR10A-201ENST00000385043 110 ntBASIC2.3□□□□□ -2.04
HDDC3Q8N4P3 RNU2-8P-201ENST00000410727 190 ntBASIC2.3□□□□□ -2.04
HDDC3Q8N4P3 AC093382.1-201ENST00000413311 379 ntTSL 5 BASIC2.3□□□□□ -2.04
HDDC3Q8N4P3 CR769767.1-201ENST00000436337 346 ntBASIC2.3□□□□□ -2.04
HDDC3Q8N4P3 AL138830.2-202ENST00000446358 786 ntTSL 2 BASIC2.3□□□□□ -2.04
HDDC3Q8N4P3 snoU109.2-201ENST00000459316 135 ntBASIC2.3□□□□□ -2.04
HDDC3Q8N4P3 HMGB1P30-201ENST00000492455 606 ntBASIC2.3□□□□□ -2.04
HDDC3Q8N4P3 AC022493.1-201ENST00000492984 337 ntBASIC2.3□□□□□ -2.04
HDDC3Q8N4P3 AC117522.1-201ENST00000509821 380 ntBASIC2.3□□□□□ -2.04
HDDC3Q8N4P3 AC112206.3-201ENST00000514578 389 ntBASIC2.3□□□□□ -2.04
HDDC3Q8N4P3 RN7SKP219-201ENST00000516825 296 ntBASIC2.3□□□□□ -2.04
HDDC3Q8N4P3 RNA5SP402-201ENST00000517148 110 ntBASIC2.3□□□□□ -2.04
HDDC3Q8N4P3 AP004607.1-201ENST00000524456 203 ntBASIC2.3□□□□□ -2.04
HDDC3Q8N4P3 AC021698.1-201ENST00000524858 716 ntTSL 3 BASIC2.3□□□□□ -2.04
HDDC3Q8N4P3 AC093012.1-201ENST00000552999 446 ntTSL 3 BASIC2.3□□□□□ -2.04
HDDC3Q8N4P3 AC066612.2-201ENST00000559875 695 ntTSL 2 BASIC2.3□□□□□ -2.04
HDDC3Q8N4P3 AP005671.1-201ENST00000581798 463 ntTSL 3 BASIC2.3□□□□□ -2.04
HDDC3Q8N4P3 AL713866.2-201ENST00000603579 219 ntBASIC2.3□□□□□ -2.04
HDDC3Q8N4P3 AC010378.1-201ENST00000619270 362 ntBASIC2.3□□□□□ -2.04
HDDC3Q8N4P3 AC131159.1-201ENST00000621854 213 ntBASIC2.3□□□□□ -2.04
HDDC3Q8N4P3 AL160287.1-202ENST00000638113 454 ntTSL 5 BASIC2.3□□□□□ -2.04
HDDC3Q8N4P3 CKAP2P1-201ENST00000555477 2049 ntBASIC2.3□□□□□ -2.04
HDDC3Q8N4P3 TAB2-205ENST00000538427 4240 ntAPPRIS P1 TSL 5 BASIC2.3□□□□□ -2.04
HDDC3Q8N4P3 LINC01684-201ENST00000415182 2176 ntTSL 1 (best) BASIC2.29□□□□□ -2.04
HDDC3Q8N4P3 SNORD3E-201ENST00000362899 217 ntBASIC2.29□□□□□ -2.04
HDDC3Q8N4P3 U8.8-201ENST00000365399 135 ntBASIC2.29□□□□□ -2.04
HDDC3Q8N4P3 AL355497.1-201ENST00000406262 551 ntBASIC2.29□□□□□ -2.04
HDDC3Q8N4P3 RNU2-39P-201ENST00000410604 198 ntBASIC2.29□□□□□ -2.04
HDDC3Q8N4P3 EDDM3CP-201ENST00000415977 425 ntBASIC2.29□□□□□ -2.04
HDDC3Q8N4P3 AC114491.1-201ENST00000416095 246 ntBASIC2.29□□□□□ -2.04
HDDC3Q8N4P3 AL356583.2-201ENST00000426536 280 ntBASIC2.29□□□□□ -2.04
HDDC3Q8N4P3 MED13P1-201ENST00000428342 171 ntBASIC2.29□□□□□ -2.04
HDDC3Q8N4P3 PCYT1B-AS1-201ENST00000432626 275 ntTSL 2 BASIC2.29□□□□□ -2.04
HDDC3Q8N4P3 AC008568.1-203ENST00000433406 765 ntTSL 3 BASIC2.29□□□□□ -2.04
HDDC3Q8N4P3 PGBD4P3-201ENST00000440731 581 ntBASIC2.29□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 143.8 ms