Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 GZMAP1-201ENST00000503054 631 ntBASIC3.81□□□□□ -1.8
USP39Q53GS9 AC087664.2-201ENST00000522898 551 ntTSL 4 BASIC3.81□□□□□ -1.8
USP39Q53GS9 ERHP1-201ENST00000523006 310 ntBASIC3.81□□□□□ -1.8
USP39Q53GS9 AC107016.1-201ENST00000550463 337 ntBASIC3.81□□□□□ -1.8
USP39Q53GS9 AL049775.2-201ENST00000557547 558 ntTSL 4 BASIC3.81□□□□□ -1.8
USP39Q53GS9 AP001172.2-201ENST00000602454 467 ntTSL 5 BASIC3.81□□□□□ -1.8
USP39Q53GS9 RAC1P9-201ENST00000604990 392 ntBASIC3.81□□□□□ -1.8
USP39Q53GS9 AC098479.1-201ENST00000609225 154 ntBASIC3.81□□□□□ -1.8
USP39Q53GS9 RMDN2-AS1-204ENST00000626669 448 ntTSL 5 BASIC3.81□□□□□ -1.8
USP39Q53GS9 PRO1804-201ENST00000623780 2050 ntBASIC3.81□□□□□ -1.8
USP39Q53GS9 ESCO1-201ENST00000269214 4523 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
USP39Q53GS9 TRIM36-201ENST00000282369 4050 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
USP39Q53GS9 EVI5-201ENST00000370331 7403 ntAPPRIS P3 TSL 1 (best) BASIC3.81□□□□□ -1.8
USP39Q53GS9 TMEM68-218ENST00000617782 2477 ntAPPRIS P1 TSL 5 BASIC3.81□□□□□ -1.8
USP39Q53GS9 PPIP5K2-217ENST00000627916 6010 ntAPPRIS ALT2 TSL 5 BASIC3.8□□□□□ -1.8
USP39Q53GS9 ZNF99-201ENST00000397104 3114 ntAPPRIS P1 TSL 5 BASIC3.8□□□□□ -1.8
USP39Q53GS9 DDX10P1-201ENST00000448545 1933 ntBASIC3.8□□□□□ -1.8
USP39Q53GS9 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
USP39Q53GS9 TDRD1-202ENST00000369280 4062 ntAPPRIS ALT2 TSL 5 BASIC3.8□□□□□ -1.8
USP39Q53GS9 MGA-211ENST00000570161 11859 ntAPPRIS P4 TSL 5 BASIC3.8□□□□□ -1.8
USP39Q53GS9 RNY3P11-201ENST00000364153 102 ntBASIC3.8□□□□□ -1.8
USP39Q53GS9 SNORA20.1-201ENST00000364790 130 ntBASIC3.8□□□□□ -1.8
USP39Q53GS9 RNU1-89P-201ENST00000384592 164 ntBASIC3.8□□□□□ -1.8
USP39Q53GS9 RNU6-1093P-201ENST00000391194 107 ntBASIC3.8□□□□□ -1.8
USP39Q53GS9 NPS-201ENST00000398023 270 ntAPPRIS P1 TSL 5 BASIC3.8□□□□□ -1.8
USP39Q53GS9 SNORA11.2-201ENST00000408318 127 ntBASIC3.8□□□□□ -1.8
USP39Q53GS9 RNU6ATAC16P-201ENST00000408591 138 ntBASIC3.8□□□□□ -1.8
USP39Q53GS9 ATP5A1P2-201ENST00000412323 255 ntBASIC3.8□□□□□ -1.8
USP39Q53GS9 AL160275.3-201ENST00000423876 471 ntBASIC3.8□□□□□ -1.8
USP39Q53GS9 AC139712.2-201ENST00000424302 339 ntBASIC3.8□□□□□ -1.8
USP39Q53GS9 AL133396.1-201ENST00000432048 687 ntBASIC3.8□□□□□ -1.8
USP39Q53GS9 NEFMP1-201ENST00000443423 1006 ntBASIC3.8□□□□□ -1.8
USP39Q53GS9 AC008264.1-201ENST00000447612 367 ntBASIC3.8□□□□□ -1.8
USP39Q53GS9 MTND4LP30-201ENST00000454092 297 ntBASIC3.8□□□□□ -1.8
USP39Q53GS9 RNU7-138P-201ENST00000459479 64 ntBASIC3.8□□□□□ -1.8
USP39Q53GS9 AC011005.2-201ENST00000487324 359 ntBASIC3.8□□□□□ -1.8
USP39Q53GS9 RPL7P23-201ENST00000493874 747 ntBASIC3.8□□□□□ -1.8
USP39Q53GS9 AC093852.1-201ENST00000503587 266 ntBASIC3.8□□□□□ -1.8
USP39Q53GS9 LINC02374-202ENST00000515222 578 ntTSL 4 BASIC3.8□□□□□ -1.8
USP39Q53GS9 SNORA25.11-201ENST00000515935 105 ntBASIC3.8□□□□□ -1.8
USP39Q53GS9 RNU6-138P-201ENST00000515952 107 ntBASIC3.8□□□□□ -1.8
USP39Q53GS9 AC022039.1-201ENST00000527110 488 ntTSL 2 BASIC3.8□□□□□ -1.8
USP39Q53GS9 HSPE1P20-201ENST00000538133 289 ntBASIC3.8□□□□□ -1.8
USP39Q53GS9 AC022080.3-201ENST00000544433 482 ntBASIC3.8□□□□□ -1.8
USP39Q53GS9 AC126323.6-201ENST00000561701 451 ntTSL 3 BASIC3.8□□□□□ -1.8
USP39Q53GS9 AC087749.2-201ENST00000583910 352 ntTSL 5 BASIC3.8□□□□□ -1.8
USP39Q53GS9 AC104534.1-201ENST00000594558 566 ntTSL 4 BASIC3.8□□□□□ -1.8
USP39Q53GS9 AL034351.1-201ENST00000605288 668 ntBASIC3.8□□□□□ -1.8
USP39Q53GS9 AC096772.1-201ENST00000609146 564 ntBASIC3.8□□□□□ -1.8
USP39Q53GS9 MIR486-1-201ENST00000612171 68 ntBASIC3.8□□□□□ -1.8
USP39Q53GS9 RTN4-209ENST00000405240 4061 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
USP39Q53GS9 CUL4B-202ENST00000371322 4902 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
USP39Q53GS9 MACC1-205ENST00000589011 2686 ntAPPRIS P1 TSL 5 BASIC3.79□□□□□ -1.8
USP39Q53GS9 DNAJC2-201ENST00000249270 1846 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
USP39Q53GS9 LINC02431-201ENST00000503929 3601 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
USP39Q53GS9 FIGNL1-202ENST00000395556 3485 ntAPPRIS P1 TSL 2 BASIC3.79□□□□□ -1.8
USP39Q53GS9 RNA5SP322-201ENST00000363617 119 ntBASIC3.79□□□□□ -1.8
USP39Q53GS9 RNA5SP50-201ENST00000363731 107 ntBASIC3.79□□□□□ -1.8
USP39Q53GS9 RNU6-190P-201ENST00000384154 102 ntBASIC3.79□□□□□ -1.8
USP39Q53GS9 Y_RNA.577-201ENST00000384794 101 ntBASIC3.79□□□□□ -1.8
USP39Q53GS9 MIR634-201ENST00000385208 97 ntBASIC3.79□□□□□ -1.8
USP39Q53GS9 RNU6-1156P-201ENST00000410365 100 ntBASIC3.79□□□□□ -1.8
USP39Q53GS9 Z92545.1-201ENST00000411782 234 ntBASIC3.79□□□□□ -1.8
USP39Q53GS9 AFDN-AS1-202ENST00000417244 182 ntTSL 2 BASIC3.79□□□□□ -1.8
USP39Q53GS9 AL590135.1-201ENST00000422215 156 ntBASIC3.79□□□□□ -1.8
USP39Q53GS9 TAB3-AS1-201ENST00000428263 245 ntTSL 5 BASIC3.79□□□□□ -1.8
USP39Q53GS9 LINC02095-201ENST00000430908 346 ntTSL 2 BASIC3.79□□□□□ -1.8
USP39Q53GS9 FCF1P4-201ENST00000448326 183 ntBASIC3.79□□□□□ -1.8
USP39Q53GS9 AL031274.1-201ENST00000450334 232 ntBASIC3.79□□□□□ -1.8
USP39Q53GS9 RPL23AP31-201ENST00000456160 467 ntBASIC3.79□□□□□ -1.8
USP39Q53GS9 RPL39P38-201ENST00000467018 153 ntBASIC3.79□□□□□ -1.8
USP39Q53GS9 BTF3L4P4-201ENST00000506381 449 ntBASIC3.79□□□□□ -1.8
USP39Q53GS9 Y_RNA.673-201ENST00000516306 88 ntBASIC3.79□□□□□ -1.8
USP39Q53GS9 RN7SKP60-201ENST00000516985 239 ntBASIC3.79□□□□□ -1.8
USP39Q53GS9 AC104564.2-201ENST00000581240 270 ntTSL 3 BASIC3.79□□□□□ -1.8
USP39Q53GS9 AC244505.7-201ENST00000599675 272 ntBASIC3.79□□□□□ -1.8
USP39Q53GS9 AC104763.2-201ENST00000604179 382 ntBASIC3.79□□□□□ -1.8
USP39Q53GS9 AL031176.1-201ENST00000604554 466 ntBASIC3.79□□□□□ -1.8
USP39Q53GS9 ATG5-207ENST00000613993 733 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
USP39Q53GS9 LINC01002-206ENST00000631772 539 ntTSL 4 BASIC3.79□□□□□ -1.8
USP39Q53GS9 CCNYL2-203ENST00000638057 730 ntTSL 3 BASIC3.79□□□□□ -1.8
USP39Q53GS9 RNMT-206ENST00000589866 1879 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
USP39Q53GS9 C6orf10-209ENST00000612031 2179 ntAPPRIS ALT2 TSL 5 BASIC3.79□□□□□ -1.8
USP39Q53GS9 AC027287.1-201ENST00000553115 1453 ntBASIC3.79□□□□□ -1.8
USP39Q53GS9 MUC19-205ENST00000454784 24775 ntTSL 5 BASIC3.78□□□□□ -1.8
USP39Q53GS9 UEVLD-208ENST00000535484 1963 ntTSL 2 BASIC3.78□□□□□ -1.8
USP39Q53GS9 DGKH-201ENST00000261491 17261 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
USP39Q53GS9 OR56A5-201ENST00000340110 738 ntBASIC3.78□□□□□ -1.8
USP39Q53GS9 RNU6-596P-201ENST00000365395 98 ntBASIC3.78□□□□□ -1.8
USP39Q53GS9 Y_RNA.515-201ENST00000384535 112 ntBASIC3.78□□□□□ -1.8
USP39Q53GS9 Y_RNA.551-201ENST00000384661 102 ntBASIC3.78□□□□□ -1.8
USP39Q53GS9 RNU6-33P-201ENST00000384793 107 ntBASIC3.78□□□□□ -1.8
USP39Q53GS9 AP000567.1-201ENST00000406413 156 ntBASIC3.78□□□□□ -1.8
USP39Q53GS9 MIR548M-201ENST00000408260 86 ntBASIC3.78□□□□□ -1.8
USP39Q53GS9 RNU2-71P-201ENST00000411395 189 ntBASIC3.78□□□□□ -1.8
USP39Q53GS9 AC068295.1-201ENST00000413056 153 ntTSL 3 BASIC3.78□□□□□ -1.8
USP39Q53GS9 AL158156.1-201ENST00000422509 473 ntBASIC3.78□□□□□ -1.8
USP39Q53GS9 AL353997.1-201ENST00000432936 108 ntBASIC3.78□□□□□ -1.8
USP39Q53GS9 AC073063.1-201ENST00000434352 607 ntBASIC3.78□□□□□ -1.8
USP39Q53GS9 LINC02110-201ENST00000503870 546 ntTSL 3 BASIC3.78□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 161.4 ms