Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 AC091534.1-201ENST00000548779 1751 ntTSL 2 BASIC4.33□□□□□ -1.72
LIG3P49916 SPINK1-201ENST00000296695 542 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
LIG3P49916 Y_RNA.27-201ENST00000362540 103 ntBASIC4.33□□□□□ -1.72
LIG3P49916 Y_RNA.376-201ENST00000365638 108 ntBASIC4.33□□□□□ -1.72
LIG3P49916 Y_RNA.405-201ENST00000383979 100 ntBASIC4.33□□□□□ -1.72
LIG3P49916 Y_RNA.451-201ENST00000384200 100 ntBASIC4.33□□□□□ -1.72
LIG3P49916 RNU6-611P-201ENST00000384276 104 ntBASIC4.33□□□□□ -1.72
LIG3P49916 Y_RNA.483-201ENST00000384380 101 ntBASIC4.33□□□□□ -1.72
LIG3P49916 Y_RNA.524-201ENST00000384564 100 ntBASIC4.33□□□□□ -1.72
LIG3P49916 Y_RNA.561-201ENST00000384694 100 ntBASIC4.33□□□□□ -1.72
LIG3P49916 MT-TW-201ENST00000387382 68 ntBASIC4.33□□□□□ -1.72
LIG3P49916 IGLV5-37-201ENST00000390300 374 ntAPPRIS P1 BASIC4.33□□□□□ -1.72
LIG3P49916 TRAJ6-201ENST00000390531 62 ntAPPRIS P1 BASIC4.33□□□□□ -1.72
LIG3P49916 AC009310.1-201ENST00000414414 451 ntBASIC4.33□□□□□ -1.72
LIG3P49916 RPEP5-201ENST00000441137 268 ntBASIC4.33□□□□□ -1.72
LIG3P49916 AL513124.1-201ENST00000450410 614 ntBASIC4.33□□□□□ -1.72
LIG3P49916 NUTF2P7-201ENST00000453086 375 ntBASIC4.33□□□□□ -1.72
LIG3P49916 AC117465.1-201ENST00000457125 522 ntTSL 3 BASIC4.33□□□□□ -1.72
LIG3P49916 SNORD127-201ENST00000458892 86 ntBASIC4.33□□□□□ -1.72
LIG3P49916 AC034236.1-201ENST00000469891 373 ntBASIC4.33□□□□□ -1.72
LIG3P49916 UQCRHP4-201ENST00000471686 272 ntBASIC4.33□□□□□ -1.72
LIG3P49916 CPHL1P-203ENST00000471823 523 ntTSL 5 BASIC4.33□□□□□ -1.72
LIG3P49916 LINC02046-202ENST00000481334 390 ntTSL 3 BASIC4.33□□□□□ -1.72
LIG3P49916 AC108043.1-201ENST00000512696 574 ntBASIC4.33□□□□□ -1.72
LIG3P49916 CYCSP29-201ENST00000533731 318 ntBASIC4.33□□□□□ -1.72
LIG3P49916 DAZAP2-209ENST00000549732 601 ntTSL 2 BASIC4.33□□□□□ -1.72
LIG3P49916 AC136624.4-201ENST00000573044 370 ntBASIC4.33□□□□□ -1.72
LIG3P49916 RPL23AP78-201ENST00000599928 470 ntBASIC4.33□□□□□ -1.72
LIG3P49916 B3GNTL1P2-201ENST00000603673 288 ntBASIC4.33□□□□□ -1.72
LIG3P49916 AC005696.2-201ENST00000610120 626 ntTSL 3 BASIC4.33□□□□□ -1.72
LIG3P49916 AL445567.2-201ENST00000618935 498 ntBASIC4.33□□□□□ -1.72
LIG3P49916 MIR3653-201ENST00000625572 110 ntBASIC4.33□□□□□ -1.72
LIG3P49916 AL109837.2-201ENST00000632608 295 ntTSL 3 BASIC4.33□□□□□ -1.72
LIG3P49916 OR4M1-202ENST00000641200 3493 ntAPPRIS P1 BASIC4.33□□□□□ -1.72
LIG3P49916 AGTR2-201ENST00000371906 2882 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
LIG3P49916 TOPORSLP1-203ENST00000493279 2871 ntTSL 4 BASIC4.33□□□□□ -1.72
LIG3P49916 MYSM1-203ENST00000472487 7785 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
LIG3P49916 SRP72P2-201ENST00000344851 1979 ntBASIC4.33□□□□□ -1.72
LIG3P49916 AP000560.1-201ENST00000624150 1937 ntBASIC4.33□□□□□ -1.72
LIG3P49916 AC010615.1-201ENST00000594254 1764 ntBASIC4.32□□□□□ -1.72
LIG3P49916 CFAP44-202ENST00000393845 7069 ntAPPRIS ALT2 TSL 5 BASIC4.32□□□□□ -1.72
LIG3P49916 AC009541.1-201ENST00000438279 2662 ntBASIC4.32□□□□□ -1.72
LIG3P49916 ZNF616-201ENST00000330123 2563 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
LIG3P49916 Y_RNA.26-201ENST00000362539 101 ntBASIC4.32□□□□□ -1.72
LIG3P49916 RNU6-778P-201ENST00000363269 103 ntBASIC4.32□□□□□ -1.72
LIG3P49916 RNU6-806P-201ENST00000365147 105 ntBASIC4.32□□□□□ -1.72
LIG3P49916 RNU6-898P-201ENST00000365627 104 ntBASIC4.32□□□□□ -1.72
LIG3P49916 RNU1-73P-201ENST00000383971 164 ntBASIC4.32□□□□□ -1.72
LIG3P49916 Y_RNA.552-201ENST00000384665 112 ntBASIC4.32□□□□□ -1.72
LIG3P49916 TAB3-AS1-201ENST00000428263 245 ntTSL 5 BASIC4.32□□□□□ -1.72
LIG3P49916 AL355303.1-201ENST00000428920 680 ntTSL 3 BASIC4.32□□□□□ -1.72
LIG3P49916 AL591043.1-201ENST00000432461 424 ntBASIC4.32□□□□□ -1.72
LIG3P49916 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC4.32□□□□□ -1.72
LIG3P49916 AC105398.1-201ENST00000446073 402 ntTSL 5 BASIC4.32□□□□□ -1.72
LIG3P49916 HMGB3P8-201ENST00000449709 577 ntBASIC4.32□□□□□ -1.72
LIG3P49916 AC092162.2-204ENST00000451851 566 ntTSL 4 BASIC4.32□□□□□ -1.72
LIG3P49916 RNU7-87P-201ENST00000459343 62 ntBASIC4.32□□□□□ -1.72
LIG3P49916 SNORA31.9-201ENST00000516429 84 ntBASIC4.32□□□□□ -1.72
LIG3P49916 RNA5SP49-201ENST00000516450 115 ntBASIC4.32□□□□□ -1.72
LIG3P49916 RN7SKP289-201ENST00000517244 295 ntBASIC4.32□□□□□ -1.72
LIG3P49916 LINC01479-202ENST00000546170 444 ntTSL 2 BASIC4.32□□□□□ -1.72
LIG3P49916 TVP23BP1-201ENST00000557500 617 ntBASIC4.32□□□□□ -1.72
LIG3P49916 AC126323.6-201ENST00000561701 451 ntTSL 3 BASIC4.32□□□□□ -1.72
LIG3P49916 AC060766.3-201ENST00000591442 263 ntBASIC4.32□□□□□ -1.72
LIG3P49916 CCL14-203ENST00000620991 426 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
LIG3P49916 OR4C16-201ENST00000623907 933 ntAPPRIS P1 BASIC4.32□□□□□ -1.72
LIG3P49916 TNPO1P3-201ENST00000436471 2662 ntBASIC4.32□□□□□ -1.72
LIG3P49916 MRPL42-206ENST00000549982 15582 ntAPPRIS P2 TSL 1 (best) BASIC4.32□□□□□ -1.72
LIG3P49916 KCNJ16-201ENST00000283936 4062 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
LIG3P49916 DNAH8-202ENST00000359357 13864 ntAPPRIS ALT2 TSL 2 BASIC4.32□□□□□ -1.72
LIG3P49916 OXR1-206ENST00000449762 2621 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
LIG3P49916 CRB1-201ENST00000367397 9023 ntTSL 2 BASIC4.31□□□□□ -1.72
LIG3P49916 AL391684.1-201ENST00000416191 2998 ntTSL 5 BASIC4.31□□□□□ -1.72
LIG3P49916 Y_RNA.183-201ENST00000363882 113 ntBASIC4.31□□□□□ -1.72
LIG3P49916 Y_RNA.358-201ENST00000365491 99 ntBASIC4.31□□□□□ -1.72
LIG3P49916 MIR518D-201ENST00000385014 87 ntBASIC4.31□□□□□ -1.72
LIG3P49916 SNAP23-203ENST00000397138 477 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
LIG3P49916 MIR888-201ENST00000401186 77 ntBASIC4.31□□□□□ -1.72
LIG3P49916 RNU6ATAC23P-201ENST00000408448 123 ntBASIC4.31□□□□□ -1.72
LIG3P49916 AL445259.1-203ENST00000427828 251 ntTSL 3 BASIC4.31□□□□□ -1.72
LIG3P49916 DCLRE1CP1-201ENST00000454630 470 ntBASIC4.31□□□□□ -1.72
LIG3P49916 RN7SL691P-201ENST00000494487 301 ntBASIC4.31□□□□□ -1.72
LIG3P49916 AC107222.1-201ENST00000510899 637 ntBASIC4.31□□□□□ -1.72
LIG3P49916 MIR2355-201ENST00000517199 87 ntBASIC4.31□□□□□ -1.72
LIG3P49916 IGKV2D-19-201ENST00000523346 262 ntBASIC4.31□□□□□ -1.72
LIG3P49916 MFAP5-205ENST00000535336 566 ntTSL 4 BASIC4.31□□□□□ -1.72
LIG3P49916 AP000777.1-201ENST00000541495 355 ntTSL 3 BASIC4.31□□□□□ -1.72
LIG3P49916 LINC02459-201ENST00000551761 474 ntTSL 3 BASIC4.31□□□□□ -1.72
LIG3P49916 AC093227.3-202ENST00000586606 704 ntAPPRIS P5 TSL 3 BASIC4.31□□□□□ -1.72
LIG3P49916 AC004825.2-201ENST00000616634 455 ntBASIC4.31□□□□□ -1.72
LIG3P49916 AC090740.1-201ENST00000623193 2262 ntBASIC4.31□□□□□ -1.72
LIG3P49916 TJP1-204ENST00000400011 6764 ntAPPRIS ALT2 TSL 1 (best) BASIC4.31□□□□□ -1.72
LIG3P49916 AC005550.3-201ENST00000451240 3743 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
LIG3P49916 AC010733.2-201ENST00000589496 5702 ntBASIC4.31□□□□□ -1.72
LIG3P49916 SNX16-212ENST00000615066 1918 ntTSL 5 BASIC4.31□□□□□ -1.72
LIG3P49916 BAZ2B-204ENST00000392783 8289 ntAPPRIS P1 TSL 5 BASIC4.3□□□□□ -1.72
LIG3P49916 MGA-207ENST00000566586 14439 ntAPPRIS ALT2 TSL 1 (best) BASIC4.3□□□□□ -1.72
LIG3P49916 DTWD2-201ENST00000304058 4365 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
LIG3P49916 GMNC-201ENST00000442080 3422 ntAPPRIS P1 TSL 5 BASIC4.3□□□□□ -1.72
LIG3P49916 OR13G1-202ENST00000642119 2568 ntAPPRIS P1 BASIC4.3□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 116 ms