Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 MRPL35P1-201ENST00000404272 572 ntBASIC0.54□□□□□ -2.32
CUX1P39880 AL356776.1-201ENST00000406574 447 ntBASIC0.54□□□□□ -2.32
CUX1P39880 RPS25P9-201ENST00000435591 252 ntBASIC0.54□□□□□ -2.32
CUX1P39880 TSPY5P-202ENST00000456541 142 ntTSL 3 BASIC0.54□□□□□ -2.32
CUX1P39880 AP001025.1-201ENST00000486139 332 ntBASIC0.54□□□□□ -2.32
CUX1P39880 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC0.54□□□□□ -2.32
CUX1P39880 RNU4-18P-201ENST00000516751 149 ntBASIC0.54□□□□□ -2.32
CUX1P39880 C1DP5-201ENST00000525775 383 ntBASIC0.54□□□□□ -2.32
CUX1P39880 RAB11AP2-201ENST00000545905 639 ntBASIC0.54□□□□□ -2.32
CUX1P39880 AL133279.2-201ENST00000556546 428 ntTSL 3 BASIC0.54□□□□□ -2.32
CUX1P39880 AC010738.1-201ENST00000604970 987 ntBASIC0.54□□□□□ -2.32
CUX1P39880 AC024581.2-201ENST00000619986 252 ntBASIC0.54□□□□□ -2.32
CUX1P39880 ANKRD30BP1-201ENST00000451052 2186 ntBASIC0.53□□□□□ -2.32
CUX1P39880 RNU11-3P-201ENST00000391111 133 ntBASIC0.53□□□□□ -2.33
CUX1P39880 AL031577.2-201ENST00000404133 280 ntBASIC0.53□□□□□ -2.33
CUX1P39880 RNU2-36P-201ENST00000410361 191 ntBASIC0.53□□□□□ -2.33
CUX1P39880 OFD1P2Y-201ENST00000421895 1149 ntBASIC0.53□□□□□ -2.33
CUX1P39880 AC104073.1-201ENST00000451988 151 ntBASIC0.53□□□□□ -2.33
CUX1P39880 LINC01203-202ENST00000456091 476 ntTSL 3 BASIC0.53□□□□□ -2.33
CUX1P39880 AP1S2P1-201ENST00000457344 379 ntBASIC0.53□□□□□ -2.33
CUX1P39880 RPL30P7-201ENST00000479312 323 ntBASIC0.53□□□□□ -2.33
CUX1P39880 HTN3-202ENST00000526767 578 ntAPPRIS P2 TSL 1 (best) BASIC0.53□□□□□ -2.33
CUX1P39880 DLGAP1-AS4-201ENST00000582054 757 ntTSL 5 BASIC0.53□□□□□ -2.33
CUX1P39880 AC015688.2-201ENST00000584523 262 ntBASIC0.53□□□□□ -2.33
CUX1P39880 AC004492.1-201ENST00000607036 742 ntBASIC0.53□□□□□ -2.33
CUX1P39880 AL365204.3-201ENST00000612448 685 ntBASIC0.53□□□□□ -2.33
CUX1P39880 AL359314.1-201ENST00000616913 261 ntBASIC0.53□□□□□ -2.33
CUX1P39880 AC018926.3-201ENST00000618841 406 ntBASIC0.53□□□□□ -2.33
CUX1P39880 PRPSAP2-229ENST00000628609 192 ntTSL 5 BASIC0.53□□□□□ -2.33
CUX1P39880 ZBTB8OS-201ENST00000341885 312 ntTSL 1 (best) BASIC0.52□□□□□ -2.33
CUX1P39880 RNU6-251P-201ENST00000363235 104 ntBASIC0.52□□□□□ -2.33
CUX1P39880 SPHAR-201ENST00000366688 648 ntAPPRIS P1 BASIC0.52□□□□□ -2.33
CUX1P39880 RNU6-441P-201ENST00000384545 106 ntBASIC0.52□□□□□ -2.33
CUX1P39880 AC069282.1-201ENST00000411911 526 ntBASIC0.52□□□□□ -2.33
CUX1P39880 AL022718.1-201ENST00000412004 84 ntBASIC0.52□□□□□ -2.33
CUX1P39880 AC009158.1-206ENST00000417476 454 ntTSL 3 BASIC0.52□□□□□ -2.33
CUX1P39880 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC0.52□□□□□ -2.33
CUX1P39880 AL590383.1-201ENST00000428602 75 ntBASIC0.52□□□□□ -2.33
CUX1P39880 TMEM247-203ENST00000449601 741 ntTSL 1 (best) BASIC0.52□□□□□ -2.33
CUX1P39880 LINC02494-201ENST00000509824 427 ntTSL 3 BASIC0.52□□□□□ -2.33
CUX1P39880 RNU6-488P-201ENST00000515918 99 ntBASIC0.52□□□□□ -2.33
CUX1P39880 SCARNA16.2-201ENST00000516520 172 ntBASIC0.52□□□□□ -2.33
CUX1P39880 AC136628.3-201ENST00000521868 290 ntBASIC0.52□□□□□ -2.33
CUX1P39880 AC069133.1-201ENST00000522857 566 ntTSL 4 BASIC0.52□□□□□ -2.33
CUX1P39880 AC005832.3-201ENST00000537929 631 ntBASIC0.52□□□□□ -2.33
CUX1P39880 LINC00907-210ENST00000593316 847 ntTSL 3 BASIC0.52□□□□□ -2.33
CUX1P39880 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC0.52□□□□□ -2.33
CUX1P39880 ZNF680P1-201ENST00000436625 1469 ntBASIC0.51□□□□□ -2.33
CUX1P39880 RNA5SP327-201ENST00000362494 101 ntBASIC0.51□□□□□ -2.33
CUX1P39880 SNORD115-3-201ENST00000363100 82 ntBASIC0.51□□□□□ -2.33
CUX1P39880 MIR1283-2-201ENST00000408621 87 ntBASIC0.51□□□□□ -2.33
CUX1P39880 BTF3P8-201ENST00000414577 526 ntBASIC0.51□□□□□ -2.33
CUX1P39880 LINC01473-202ENST00000427108 695 ntTSL 5 BASIC0.51□□□□□ -2.33
CUX1P39880 LINC02053-202ENST00000488262 940 ntTSL 1 (best) BASIC0.51□□□□□ -2.33
CUX1P39880 AC113398.2-201ENST00000507630 558 ntBASIC0.51□□□□□ -2.33
CUX1P39880 AC117460.1-201ENST00000508964 467 ntTSL 3 BASIC0.51□□□□□ -2.33
CUX1P39880 RNU6-758P-201ENST00000516292 89 ntBASIC0.51□□□□□ -2.33
CUX1P39880 SNORA31.22-201ENST00000517204 135 ntBASIC0.51□□□□□ -2.33
CUX1P39880 DUXAP1-201ENST00000556632 463 ntBASIC0.51□□□□□ -2.33
CUX1P39880 MIR5190-201ENST00000581537 80 ntBASIC0.51□□□□□ -2.33
CUX1P39880 AC024060.1-201ENST00000607052 494 ntBASIC0.51□□□□□ -2.33
CUX1P39880 AL078604.3-201ENST00000615580 211 ntBASIC0.51□□□□□ -2.33
CUX1P39880 AC007792.1-201ENST00000623023 402 ntBASIC0.51□□□□□ -2.33
CUX1P39880 AC069228.1-201ENST00000546936 1615 ntTSL 3 BASIC0.51□□□□□ -2.33
CUX1P39880 Y_RNA.170-201ENST00000363746 110 ntBASIC0.5□□□□□ -2.33
CUX1P39880 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC0.5□□□□□ -2.33
CUX1P39880 SNORA29-201ENST00000384183 140 ntBASIC0.5□□□□□ -2.33
CUX1P39880 MIR100-201ENST00000385259 80 ntBASIC0.5□□□□□ -2.33
CUX1P39880 HMGB1P17-201ENST00000403495 628 ntBASIC0.5□□□□□ -2.33
CUX1P39880 MTCO2P20-201ENST00000437339 673 ntBASIC0.5□□□□□ -2.33
CUX1P39880 AL161788.1-201ENST00000441805 169 ntBASIC0.5□□□□□ -2.33
CUX1P39880 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC0.5□□□□□ -2.33
CUX1P39880 NAALADL2-AS3-202ENST00000453180 413 ntTSL 3 BASIC0.5□□□□□ -2.33
CUX1P39880 RNU6-27P-201ENST00000516146 107 ntBASIC0.5□□□□□ -2.33
CUX1P39880 MAL2-206ENST00000522187 547 ntTSL 4 BASIC0.5□□□□□ -2.33
CUX1P39880 LINC02316-201ENST00000553346 768 ntTSL 3 BASIC0.5□□□□□ -2.33
CUX1P39880 MIR4661-201ENST00000582720 75 ntBASIC0.5□□□□□ -2.33
CUX1P39880 AC080013.4-201ENST00000607624 649 ntBASIC0.5□□□□□ -2.33
CUX1P39880 SNORA25B-201ENST00000365507 128 ntBASIC0.49□□□□□ -2.33
CUX1P39880 RNU6-217P-201ENST00000384164 104 ntBASIC0.49□□□□□ -2.33
CUX1P39880 AL159990.1-201ENST00000415119 337 ntTSL 3 BASIC0.49□□□□□ -2.33
CUX1P39880 AC244023.1-201ENST00000426884 112 ntBASIC0.49□□□□□ -2.33
CUX1P39880 USP9YP24-201ENST00000434374 697 ntBASIC0.49□□□□□ -2.33
CUX1P39880 AC068533.3-201ENST00000435524 404 ntTSL 5 BASIC0.49□□□□□ -2.33
CUX1P39880 AL159990.2-201ENST00000436491 337 ntTSL 3 BASIC0.49□□□□□ -2.33
CUX1P39880 AC006042.4-201ENST00000451066 692 ntTSL 5 BASIC0.49□□□□□ -2.33
CUX1P39880 VPS26AP1-201ENST00000483197 979 ntBASIC0.49□□□□□ -2.33
CUX1P39880 LARP1BP2-201ENST00000486594 519 ntBASIC0.49□□□□□ -2.33
CUX1P39880 LINC02447-203ENST00000504402 292 ntTSL 3 BASIC0.49□□□□□ -2.33
CUX1P39880 AC005741.1-201ENST00000511094 432 ntBASIC0.49□□□□□ -2.33
CUX1P39880 PSMC1P5-201ENST00000512850 177 ntBASIC0.49□□□□□ -2.33
CUX1P39880 RNU5A-7P-201ENST00000515979 116 ntBASIC0.49□□□□□ -2.33
CUX1P39880 AC018861.2-201ENST00000518078 513 ntTSL 2 BASIC0.49□□□□□ -2.33
CUX1P39880 AP003034.1-201ENST00000534621 422 ntBASIC0.49□□□□□ -2.33
CUX1P39880 AC002400.1-201ENST00000569310 726 ntBASIC0.49□□□□□ -2.33
CUX1P39880 ABBA01006766.1-201ENST00000584728 294 ntBASIC0.49□□□□□ -2.33
CUX1P39880 AC242498.1-201ENST00000604134 111 ntBASIC0.49□□□□□ -2.33
CUX1P39880 AC243994.1-201ENST00000618627 109 ntBASIC0.49□□□□□ -2.33
CUX1P39880 PARPBP-203ENST00000392911 1916 ntTSL 5 BASIC0.49□□□□□ -2.33
CUX1P39880 RGS13-201ENST00000391995 1505 ntAPPRIS P1 TSL 1 (best) BASIC0.49□□□□□ -2.33
Retrieved 100 of 98,524 protein–RNA pairs in 86.7 ms