Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 AC133106.1-201ENST00000419029 397 ntTSL 3 BASIC3.07□□□□□ -1.92
HOXC9P31274 ATG3P1-201ENST00000419507 911 ntBASIC3.07□□□□□ -1.92
HOXC9P31274 AC016710.1-201ENST00000421326 466 ntTSL 3 BASIC3.07□□□□□ -1.92
HOXC9P31274 AC092047.1-201ENST00000424997 240 ntBASIC3.07□□□□□ -1.92
HOXC9P31274 AL589986.2-201ENST00000429352 397 ntTSL 2 BASIC3.07□□□□□ -1.92
HOXC9P31274 UBE2V1P8-201ENST00000437166 265 ntBASIC3.07□□□□□ -1.92
HOXC9P31274 AC018816.1-203ENST00000441894 338 ntTSL 3 BASIC3.07□□□□□ -1.92
HOXC9P31274 LINC00571-203ENST00000454060 525 ntTSL 3 BASIC3.07□□□□□ -1.92
HOXC9P31274 AC008539.1-201ENST00000507653 482 ntTSL 3 BASIC3.07□□□□□ -1.92
HOXC9P31274 AC008716.1-201ENST00000511084 513 ntBASIC3.07□□□□□ -1.92
HOXC9P31274 SNORA40.12-201ENST00000516329 111 ntBASIC3.07□□□□□ -1.92
HOXC9P31274 AP000867.2-201ENST00000532468 320 ntBASIC3.07□□□□□ -1.92
HOXC9P31274 AC068205.1-204ENST00000532989 481 ntTSL 3 BASIC3.07□□□□□ -1.92
HOXC9P31274 MIR4703-201ENST00000577728 79 ntBASIC3.07□□□□□ -1.92
HOXC9P31274 MIR3609-201ENST00000582661 80 ntBASIC3.07□□□□□ -1.92
HOXC9P31274 AC007001.1-201ENST00000590912 670 ntTSL 5 BASIC3.07□□□□□ -1.92
HOXC9P31274 AC025165.5-201ENST00000602802 578 ntBASIC3.07□□□□□ -1.92
HOXC9P31274 U6atac.1-201ENST00000616025 117 ntBASIC3.07□□□□□ -1.92
HOXC9P31274 ATM-228ENST00000639240 498 ntTSL 5 BASIC3.07□□□□□ -1.92
HOXC9P31274 ATM-230ENST00000640388 578 ntTSL 5 BASIC3.07□□□□□ -1.92
HOXC9P31274 SERPINI2-202ENST00000461846 1514 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
HOXC9P31274 AC103710.2-202ENST00000641454 2853 ntBASIC3.06□□□□□ -1.92
HOXC9P31274 MIR21-201ENST00000362134 72 ntBASIC3.06□□□□□ -1.92
HOXC9P31274 Y_RNA.9-201ENST00000362354 101 ntBASIC3.06□□□□□ -1.92
HOXC9P31274 IL33-201ENST00000381434 2641 ntAPPRIS P1 TSL 1 (best) BASIC3.06□□□□□ -1.92
HOXC9P31274 SNORD37.1-201ENST00000390968 65 ntBASIC3.06□□□□□ -1.92
HOXC9P31274 RNU6-550P-201ENST00000391057 101 ntBASIC3.06□□□□□ -1.92
HOXC9P31274 SAR1AP2-201ENST00000392696 594 ntBASIC3.06□□□□□ -1.92
HOXC9P31274 RNU6-387P-201ENST00000411331 105 ntBASIC3.06□□□□□ -1.92
HOXC9P31274 OR6C66P-201ENST00000414917 930 ntBASIC3.06□□□□□ -1.92
HOXC9P31274 LINC00428-201ENST00000415620 227 ntTSL 5 BASIC3.06□□□□□ -1.92
HOXC9P31274 USP9YP27-201ENST00000418455 438 ntBASIC3.06□□□□□ -1.92
HOXC9P31274 EIF1P1-201ENST00000421436 341 ntBASIC3.06□□□□□ -1.92
HOXC9P31274 LINC01707-201ENST00000425517 627 ntTSL 3 BASIC3.06□□□□□ -1.92
HOXC9P31274 AL596276.1-201ENST00000434465 418 ntBASIC3.06□□□□□ -1.92
HOXC9P31274 AC092473.1-201ENST00000441098 221 ntBASIC3.06□□□□□ -1.92
HOXC9P31274 AC016691.1-201ENST00000441321 413 ntBASIC3.06□□□□□ -1.92
HOXC9P31274 AP000431.2-201ENST00000450653 790 ntTSL 2 BASIC3.06□□□□□ -1.92
HOXC9P31274 AL118520.1-201ENST00000450770 291 ntBASIC3.06□□□□□ -1.92
HOXC9P31274 AC073326.1-201ENST00000451832 557 ntTSL 3 BASIC3.06□□□□□ -1.92
HOXC9P31274 FABP5P15-201ENST00000453566 214 ntBASIC3.06□□□□□ -1.92
HOXC9P31274 AC046136.1-201ENST00000459855 533 ntTSL 3 BASIC3.06□□□□□ -1.92
HOXC9P31274 AL121769.1-201ENST00000469473 401 ntBASIC3.06□□□□□ -1.92
HOXC9P31274 LINC02377-201ENST00000500169 450 ntTSL 3 BASIC3.06□□□□□ -1.92
HOXC9P31274 SUMO2P6-201ENST00000505273 288 ntBASIC3.06□□□□□ -1.92
HOXC9P31274 MGC32805-203ENST00000506053 652 ntTSL 3 BASIC3.06□□□□□ -1.92
HOXC9P31274 AC010265.1-201ENST00000513509 211 ntBASIC3.06□□□□□ -1.92
HOXC9P31274 AC004054.1-201ENST00000515111 270 ntTSL 3 BASIC3.06□□□□□ -1.92
HOXC9P31274 RNU6-1281P-201ENST00000516223 105 ntBASIC3.06□□□□□ -1.92
HOXC9P31274 MTND1P5-201ENST00000517906 940 ntBASIC3.06□□□□□ -1.92
HOXC9P31274 MTND4LP26-201ENST00000518144 282 ntBASIC3.06□□□□□ -1.92
HOXC9P31274 AC022360.2-201ENST00000522390 456 ntTSL 3 BASIC3.06□□□□□ -1.92
HOXC9P31274 C14orf105-204ENST00000526336 598 ntTSL 4 BASIC3.06□□□□□ -1.92
HOXC9P31274 OR5AQ1P-201ENST00000527596 927 ntBASIC3.06□□□□□ -1.92
HOXC9P31274 OR5BN1P-201ENST00000532955 829 ntBASIC3.06□□□□□ -1.92
HOXC9P31274 AC020661.3-201ENST00000558101 414 ntTSL 3 BASIC3.06□□□□□ -1.92
HOXC9P31274 AC007495.2-202ENST00000564102 535 ntTSL 4 BASIC3.06□□□□□ -1.92
HOXC9P31274 AC008945.2-201ENST00000606056 604 ntBASIC3.06□□□□□ -1.92
HOXC9P31274 AC092794.1-201ENST00000612734 582 ntBASIC3.06□□□□□ -1.92
HOXC9P31274 AC090517.2-201ENST00000614966 680 ntBASIC3.06□□□□□ -1.92
HOXC9P31274 SEPT14P19-202ENST00000632397 370 ntTSL 3 BASIC3.06□□□□□ -1.92
HOXC9P31274 AC068544.1-201ENST00000635064 248 ntTSL 5 BASIC3.06□□□□□ -1.92
HOXC9P31274 ATP2B1-201ENST00000261173 6777 ntAPPRIS P1 TSL 1 (best) BASIC3.06□□□□□ -1.92
HOXC9P31274 AC103988.1-201ENST00000566382 2177 ntBASIC3.05□□□□□ -1.92
HOXC9P31274 TXLNGY-201ENST00000253320 7299 ntTSL 2 BASIC3.05□□□□□ -1.92
HOXC9P31274 TAS2R13-201ENST00000390677 1637 ntAPPRIS P1 BASIC3.05□□□□□ -1.92
HOXC9P31274 AC103993.1-201ENST00000521500 1584 ntTSL 5 BASIC3.05□□□□□ -1.92
HOXC9P31274 ANKRD36BP1-202ENST00000604892 1417 ntBASIC3.05□□□□□ -1.92
HOXC9P31274 SNORA4.3-201ENST00000365564 137 ntBASIC3.05□□□□□ -1.92
HOXC9P31274 DEFB125-201ENST00000382410 587 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
HOXC9P31274 SNORA69-201ENST00000383895 132 ntBASIC3.05□□□□□ -1.92
HOXC9P31274 RNU6-1035P-201ENST00000384477 107 ntBASIC3.05□□□□□ -1.92
HOXC9P31274 Y_RNA.534-201ENST00000384599 112 ntBASIC3.05□□□□□ -1.92
HOXC9P31274 AL138737.1-202ENST00000418834 876 ntTSL 3 BASIC3.05□□□□□ -1.92
HOXC9P31274 AL160275.3-201ENST00000423876 471 ntBASIC3.05□□□□□ -1.92
HOXC9P31274 RPL7P46-201ENST00000425129 740 ntBASIC3.05□□□□□ -1.92
HOXC9P31274 GYPB-201ENST00000429670 239 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
HOXC9P31274 SNRPEP9-201ENST00000436794 238 ntBASIC3.05□□□□□ -1.92
HOXC9P31274 MTATP6P13-201ENST00000438531 667 ntBASIC3.05□□□□□ -1.92
HOXC9P31274 AL354936.1-201ENST00000441521 649 ntTSL 5 BASIC3.05□□□□□ -1.92
HOXC9P31274 DPPA3P1-201ENST00000448050 469 ntBASIC3.05□□□□□ -1.92
HOXC9P31274 snoU13.23-201ENST00000458863 104 ntBASIC3.05□□□□□ -1.92
HOXC9P31274 snoU13.28-201ENST00000459235 104 ntBASIC3.05□□□□□ -1.92
HOXC9P31274 AC083798.1-201ENST00000472671 131 ntBASIC3.05□□□□□ -1.92
HOXC9P31274 AC092989.1-201ENST00000481235 277 ntBASIC3.05□□□□□ -1.92
HOXC9P31274 RPS15AP34-201ENST00000487776 387 ntBASIC3.05□□□□□ -1.92
HOXC9P31274 AC022272.1-201ENST00000503478 777 ntTSL 2 BASIC3.05□□□□□ -1.92
HOXC9P31274 AC098591.2-201ENST00000510152 315 ntBASIC3.05□□□□□ -1.92
HOXC9P31274 AC011352.1-201ENST00000512300 793 ntBASIC3.05□□□□□ -1.92
HOXC9P31274 AC021698.1-201ENST00000524858 716 ntTSL 3 BASIC3.05□□□□□ -1.92
HOXC9P31274 DEUP1-203ENST00000527307 767 ntTSL 3 BASIC3.05□□□□□ -1.92
HOXC9P31274 AP001363.1-201ENST00000544108 264 ntTSL 3 BASIC3.05□□□□□ -1.92
HOXC9P31274 MTCO3P24-201ENST00000572729 782 ntBASIC3.05□□□□□ -1.92
HOXC9P31274 AP003465.2-201ENST00000602571 373 ntBASIC3.05□□□□□ -1.92
HOXC9P31274 BNIP3P10-201ENST00000605360 577 ntBASIC3.05□□□□□ -1.92
HOXC9P31274 AC069234.5-201ENST00000611056 416 ntBASIC3.05□□□□□ -1.92
HOXC9P31274 MIR6873-201ENST00000622788 63 ntBASIC3.05□□□□□ -1.92
HOXC9P31274 AL160394.1-201ENST00000624765 724 ntBASIC3.05□□□□□ -1.92
HOXC9P31274 GYPB-216ENST00000638448 363 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
HOXC9P31274 CHD9-218ENST00000566029 13110 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 109.4 ms