Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 AMZ2P1-203ENST00000565833 850 ntBASIC3.7□□□□□ -1.82
SMARCA1P28370 LRRC37A5P-203ENST00000580181 585 ntBASIC3.7□□□□□ -1.82
SMARCA1P28370 MIR4719-201ENST00000585233 84 ntBASIC3.7□□□□□ -1.82
SMARCA1P28370 POLR3GP2-201ENST00000588366 668 ntBASIC3.7□□□□□ -1.82
SMARCA1P28370 UBE2E2-206ENST00000613545 282 ntTSL 5 BASIC3.7□□□□□ -1.82
SMARCA1P28370 AL138726.1-201ENST00000614873 333 ntBASIC3.7□□□□□ -1.82
SMARCA1P28370 LINC01002-215ENST00000632203 314 ntTSL 5 BASIC3.7□□□□□ -1.82
SMARCA1P28370 AL109837.2-201ENST00000632608 295 ntTSL 3 BASIC3.7□□□□□ -1.82
SMARCA1P28370 AC068544.1-201ENST00000635064 248 ntTSL 5 BASIC3.7□□□□□ -1.82
SMARCA1P28370 ZGRF1-212ENST00000612287 2176 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
SMARCA1P28370 TOPORSLP1-203ENST00000493279 2871 ntTSL 4 BASIC3.7□□□□□ -1.82
SMARCA1P28370 CYSLTR2-201ENST00000282018 4672 ntAPPRIS P1 BASIC3.7□□□□□ -1.82
SMARCA1P28370 KIAA0586-209ENST00000556134 5912 ntAPPRIS ALT2 TSL 5 BASIC3.7□□□□□ -1.82
SMARCA1P28370 PHF6-205ENST00000625464 4434 ntAPPRIS ALT1 TSL 5 BASIC3.7□□□□□ -1.82
SMARCA1P28370 SLC5A3-201ENST00000381151 11576 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
SMARCA1P28370 AC138393.1-203ENST00000327086 343 ntBASIC3.69□□□□□ -1.82
SMARCA1P28370 Y_RNA.67-201ENST00000362870 100 ntBASIC3.69□□□□□ -1.82
SMARCA1P28370 Y_RNA.212-201ENST00000364177 102 ntBASIC3.69□□□□□ -1.82
SMARCA1P28370 MIR491-201ENST00000384877 84 ntBASIC3.69□□□□□ -1.82
SMARCA1P28370 SNORA11.2-201ENST00000408318 127 ntBASIC3.69□□□□□ -1.82
SMARCA1P28370 MIR548K-201ENST00000408406 116 ntBASIC3.69□□□□□ -1.82
SMARCA1P28370 MIR548F5-201ENST00000408421 86 ntBASIC3.69□□□□□ -1.82
SMARCA1P28370 AL109914.1-201ENST00000414740 146 ntTSL 5 BASIC3.69□□□□□ -1.82
SMARCA1P28370 RPL32P28-201ENST00000443577 397 ntBASIC3.69□□□□□ -1.82
SMARCA1P28370 BX510359.1-201ENST00000456973 237 ntBASIC3.69□□□□□ -1.82
SMARCA1P28370 LINC02377-201ENST00000500169 450 ntTSL 3 BASIC3.69□□□□□ -1.82
SMARCA1P28370 AC026780.2-201ENST00000503489 730 ntTSL 5 BASIC3.69□□□□□ -1.82
SMARCA1P28370 RNA5SP454-201ENST00000517231 127 ntBASIC3.69□□□□□ -1.82
SMARCA1P28370 COPS8P3-201ENST00000526024 482 ntBASIC3.69□□□□□ -1.82
SMARCA1P28370 EBAG9-207ENST00000531677 777 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
SMARCA1P28370 AL355102.1-201ENST00000555383 460 ntTSL 5 BASIC3.69□□□□□ -1.82
SMARCA1P28370 PSMA4-205ENST00000558281 773 ntTSL 3 BASIC3.69□□□□□ -1.82
SMARCA1P28370 AC023043.2-201ENST00000589678 1026 ntBASIC3.69□□□□□ -1.82
SMARCA1P28370 uc_338.25-201ENST00000613756 156 ntBASIC3.69□□□□□ -1.82
SMARCA1P28370 MIR3651-201ENST00000630427 90 ntBASIC3.69□□□□□ -1.82
SMARCA1P28370 OR6C1-202ENST00000642104 2055 ntAPPRIS P1 BASIC3.69□□□□□ -1.82
SMARCA1P28370 DPP10-205ENST00000410059 6278 ntAPPRIS ALT2 TSL 1 (best) BASIC3.69□□□□□ -1.82
SMARCA1P28370 BMP5-201ENST00000370830 3952 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
SMARCA1P28370 ZNF280D-201ENST00000267807 4328 ntAPPRIS P3 TSL 1 (best) BASIC3.68□□□□□ -1.82
SMARCA1P28370 ADAMTS9-AS1-207ENST00000594810 3609 ntTSL 4 BASIC3.68□□□□□ -1.82
SMARCA1P28370 FTLP6-201ENST00000355274 422 ntBASIC3.68□□□□□ -1.82
SMARCA1P28370 Y_RNA.135-201ENST00000363439 95 ntBASIC3.68□□□□□ -1.82
SMARCA1P28370 RNU4-76P-201ENST00000364509 141 ntBASIC3.68□□□□□ -1.82
SMARCA1P28370 RNU6-384P-201ENST00000364900 104 ntBASIC3.68□□□□□ -1.82
SMARCA1P28370 SNORD116-11-201ENST00000383882 92 ntBASIC3.68□□□□□ -1.82
SMARCA1P28370 Y_RNA.480-201ENST00000384364 102 ntBASIC3.68□□□□□ -1.82
SMARCA1P28370 NT5C3A-205ENST00000409467 1032 ntAPPRIS ALT1 TSL 5 BASIC3.68□□□□□ -1.82
SMARCA1P28370 RNU4-14P-201ENST00000410858 122 ntBASIC3.68□□□□□ -1.82
SMARCA1P28370 AL592148.1-201ENST00000413568 445 ntBASIC3.68□□□□□ -1.82
SMARCA1P28370 MTND1P14-201ENST00000427400 950 ntBASIC3.68□□□□□ -1.82
SMARCA1P28370 RPS3AP52-201ENST00000435639 297 ntBASIC3.68□□□□□ -1.82
SMARCA1P28370 AC002386.1-201ENST00000436714 398 ntTSL 2 BASIC3.68□□□□□ -1.82
SMARCA1P28370 SNRPEP9-201ENST00000436794 238 ntBASIC3.68□□□□□ -1.82
SMARCA1P28370 LINC01077-201ENST00000452288 413 ntTSL 3 BASIC3.68□□□□□ -1.82
SMARCA1P28370 RPL12P25-201ENST00000455592 494 ntBASIC3.68□□□□□ -1.82
SMARCA1P28370 AC092919.1-201ENST00000467896 229 ntTSL 2 BASIC3.68□□□□□ -1.82
SMARCA1P28370 AC104472.2-201ENST00000469035 601 ntBASIC3.68□□□□□ -1.82
SMARCA1P28370 AC092185.1-201ENST00000491371 97 ntBASIC3.68□□□□□ -1.82
SMARCA1P28370 MTCO1P29-201ENST00000496868 288 ntBASIC3.68□□□□□ -1.82
SMARCA1P28370 SCARNA20.6-201ENST00000517251 106 ntBASIC3.68□□□□□ -1.82
SMARCA1P28370 RNU6-711P-201ENST00000517255 106 ntBASIC3.68□□□□□ -1.82
SMARCA1P28370 AC025755.1-201ENST00000521306 278 ntBASIC3.68□□□□□ -1.82
SMARCA1P28370 AC104027.1-201ENST00000521887 300 ntBASIC3.68□□□□□ -1.82
SMARCA1P28370 RNU6-323P-201ENST00000521915 107 ntBASIC3.68□□□□□ -1.82
SMARCA1P28370 AC013799.1-201ENST00000531157 348 ntTSL 2 BASIC3.68□□□□□ -1.82
SMARCA1P28370 AP001783.1-202ENST00000534620 408 ntTSL 2 BASIC3.68□□□□□ -1.82
SMARCA1P28370 EGLN3-AS1-201ENST00000555922 308 ntTSL 3 BASIC3.68□□□□□ -1.82
SMARCA1P28370 AC007938.3-201ENST00000604965 623 ntBASIC3.68□□□□□ -1.82
SMARCA1P28370 AC113139.1-201ENST00000605049 239 ntBASIC3.68□□□□□ -1.82
SMARCA1P28370 AL050343.2-201ENST00000607338 280 ntBASIC3.68□□□□□ -1.82
SMARCA1P28370 ATG5-207ENST00000613993 733 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
SMARCA1P28370 MIR8057-201ENST00000620957 69 ntBASIC3.68□□□□□ -1.82
SMARCA1P28370 AC244517.5-202ENST00000623741 500 ntTSL 3 BASIC3.68□□□□□ -1.82
SMARCA1P28370 PCNP-208ENST00000627393 136 ntTSL 2 BASIC3.68□□□□□ -1.82
SMARCA1P28370 AC108750.1-201ENST00000637986 2706 ntAPPRIS P1 TSL 4 BASIC3.68□□□□□ -1.82
SMARCA1P28370 RASSF8-210ENST00000541490 5505 ntAPPRIS P1 TSL 5 BASIC3.68□□□□□ -1.82
SMARCA1P28370 OSTN-202ENST00000445281 3134 ntTSL 5 BASIC3.68□□□□□ -1.82
SMARCA1P28370 LINC01416-201ENST00000563553 2310 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
SMARCA1P28370 HTR2B-201ENST00000258400 2246 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
SMARCA1P28370 FPGT-TNNI3K-202ENST00000370895 7566 ntTSL 2 BASIC3.67□□□□□ -1.82
SMARCA1P28370 RNU6-1035P-201ENST00000384477 107 ntBASIC3.67□□□□□ -1.82
SMARCA1P28370 RNU6-140P-201ENST00000384566 108 ntBASIC3.67□□□□□ -1.82
SMARCA1P28370 SAR1AP2-201ENST00000392696 594 ntBASIC3.67□□□□□ -1.82
SMARCA1P28370 RNU2-68P-201ENST00000410878 191 ntBASIC3.67□□□□□ -1.82
SMARCA1P28370 ELF3-AS1-201ENST00000415582 500 ntTSL 2 BASIC3.67□□□□□ -1.82
SMARCA1P28370 AC093911.1-201ENST00000419129 552 ntTSL 4 BASIC3.67□□□□□ -1.82
SMARCA1P28370 AC241644.2-201ENST00000426504 480 ntTSL 3 BASIC3.67□□□□□ -1.82
SMARCA1P28370 AL592466.1-201ENST00000428346 307 ntTSL 5 BASIC3.67□□□□□ -1.82
SMARCA1P28370 AL691515.1-201ENST00000432976 733 ntTSL 2 BASIC3.67□□□□□ -1.82
SMARCA1P28370 AL020998.1-201ENST00000444923 229 ntTSL 3 BASIC3.67□□□□□ -1.82
SMARCA1P28370 RN7SL863P-201ENST00000462370 296 ntBASIC3.67□□□□□ -1.82
SMARCA1P28370 PLCXD2-AS1-201ENST00000493131 491 ntTSL 3 BASIC3.67□□□□□ -1.82
SMARCA1P28370 RN7SL504P-201ENST00000494496 287 ntBASIC3.67□□□□□ -1.82
SMARCA1P28370 MTND5P5-201ENST00000503764 376 ntBASIC3.67□□□□□ -1.82
SMARCA1P28370 RNU6-1332P-201ENST00000516666 104 ntBASIC3.67□□□□□ -1.82
SMARCA1P28370 SNORD59.2-201ENST00000516873 68 ntBASIC3.67□□□□□ -1.82
SMARCA1P28370 AC118755.2-201ENST00000584676 212 ntTSL 3 BASIC3.67□□□□□ -1.82
SMARCA1P28370 AC016727.1-205ENST00000605437 569 ntBASIC3.67□□□□□ -1.82
SMARCA1P28370 ADARB1-213ENST00000611195 159 ntTSL 5 BASIC3.67□□□□□ -1.82
SMARCA1P28370 RMST_4.1-201ENST00000616886 107 ntBASIC3.67□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 115.8 ms