Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 LINC01036-201ENST00000458683 858 ntTSL 3 BASIC2.22□□□□□ -2.05
HOXC4P09017 RPS20P22-201ENST00000473700 357 ntBASIC2.22□□□□□ -2.05
HOXC4P09017 AC069439.1-201ENST00000494739 167 ntBASIC2.22□□□□□ -2.05
HOXC4P09017 RPS29P21-201ENST00000496272 170 ntBASIC2.22□□□□□ -2.05
HOXC4P09017 HMGB1P29-201ENST00000505659 499 ntBASIC2.22□□□□□ -2.05
HOXC4P09017 AC121154.1-201ENST00000507299 430 ntTSL 3 BASIC2.22□□□□□ -2.05
HOXC4P09017 AC114786.4-201ENST00000508771 728 ntBASIC2.22□□□□□ -2.05
HOXC4P09017 LINC02174-201ENST00000508977 553 ntTSL 3 BASIC2.22□□□□□ -2.05
HOXC4P09017 AC114797.1-201ENST00000514003 728 ntBASIC2.22□□□□□ -2.05
HOXC4P09017 AC022634.1-201ENST00000520765 532 ntBASIC2.22□□□□□ -2.05
HOXC4P09017 HMGN1P28-201ENST00000521340 364 ntBASIC2.22□□□□□ -2.05
HOXC4P09017 AC060765.1-201ENST00000522776 544 ntTSL 4 BASIC2.22□□□□□ -2.05
HOXC4P09017 AC007368.1-201ENST00000536422 974 ntTSL 5 BASIC2.22□□□□□ -2.05
HOXC4P09017 AC092746.1-201ENST00000542819 562 ntTSL 4 BASIC2.22□□□□□ -2.05
HOXC4P09017 AC090023.1-201ENST00000545750 443 ntTSL 3 BASIC2.22□□□□□ -2.05
HOXC4P09017 RPS3AP4-201ENST00000555161 764 ntBASIC2.22□□□□□ -2.05
HOXC4P09017 ZNF519P2-201ENST00000557032 169 ntBASIC2.22□□□□□ -2.05
HOXC4P09017 AL391261.3-201ENST00000557194 520 ntBASIC2.22□□□□□ -2.05
HOXC4P09017 AC044798.1-201ENST00000565146 418 ntTSL 5 BASIC2.22□□□□□ -2.05
HOXC4P09017 AC131274.4-201ENST00000577879 398 ntTSL 3 BASIC2.22□□□□□ -2.05
HOXC4P09017 MIR5694-201ENST00000581190 76 ntBASIC2.22□□□□□ -2.05
HOXC4P09017 AP005062.1-201ENST00000581502 607 ntTSL 3 BASIC2.22□□□□□ -2.05
HOXC4P09017 NRBF2P1-201ENST00000587407 859 ntBASIC2.22□□□□□ -2.05
HOXC4P09017 AC068790.3-201ENST00000602988 553 ntBASIC2.22□□□□□ -2.05
HOXC4P09017 AL355877.2-201ENST00000603670 358 ntBASIC2.22□□□□□ -2.05
HOXC4P09017 AP000907.4-201ENST00000604143 237 ntBASIC2.22□□□□□ -2.05
HOXC4P09017 AP001596.2-201ENST00000608410 312 ntBASIC2.22□□□□□ -2.05
HOXC4P09017 GPR171-203ENST00000617554 960 ntAPPRIS P1 BASIC2.22□□□□□ -2.05
HOXC4P09017 AC006338.1-201ENST00000618453 749 ntBASIC2.22□□□□□ -2.05
HOXC4P09017 AC009831.4-201ENST00000620744 325 ntBASIC2.22□□□□□ -2.05
HOXC4P09017 AL138713.1-201ENST00000624026 2130 ntBASIC2.22□□□□□ -2.05
HOXC4P09017 AL136313.1-201ENST00000624804 202 ntBASIC2.22□□□□□ -2.05
HOXC4P09017 MIR3688-2-201ENST00000636963 87 ntBASIC2.22□□□□□ -2.05
HOXC4P09017 PSMD5-AS1-215ENST00000640622 205 ntBASIC2.22□□□□□ -2.05
HOXC4P09017 OR5B3-202ENST00000641865 1046 ntAPPRIS P1 BASIC2.22□□□□□ -2.05
HOXC4P09017 DDX10P1-201ENST00000448545 1933 ntBASIC2.22□□□□□ -2.05
HOXC4P09017 OR4M1-202ENST00000641200 3493 ntAPPRIS P1 BASIC2.22□□□□□ -2.05
HOXC4P09017 RGPD1-204ENST00000559485 5247 ntAPPRIS P2 TSL 1 (best) BASIC2.21□□□□□ -2.06
HOXC4P09017 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC2.21□□□□□ -2.06
HOXC4P09017 PRKACB-204ENST00000370685 4481 ntAPPRIS P4 TSL 1 (best) BASIC2.21□□□□□ -2.06
HOXC4P09017 RNY3P13-201ENST00000365542 102 ntBASIC2.21□□□□□ -2.06
HOXC4P09017 RNY3P14-201ENST00000384309 102 ntBASIC2.21□□□□□ -2.06
HOXC4P09017 MIR221-201ENST00000385135 110 ntBASIC2.21□□□□□ -2.06
HOXC4P09017 SNORA48.3-201ENST00000391081 134 ntBASIC2.21□□□□□ -2.06
HOXC4P09017 RNU2-33P-201ENST00000410344 192 ntBASIC2.21□□□□□ -2.06
HOXC4P09017 ATP13A5-AS1-201ENST00000414634 476 ntTSL 3 BASIC2.21□□□□□ -2.06
HOXC4P09017 AL355674.1-201ENST00000423681 648 ntTSL 1 (best) BASIC2.21□□□□□ -2.06
HOXC4P09017 ZNF863P-201ENST00000426746 417 ntBASIC2.21□□□□□ -2.06
HOXC4P09017 PCDH9-AS1-201ENST00000430861 532 ntTSL 2 BASIC2.21□□□□□ -2.06
HOXC4P09017 GTF2IP20-201ENST00000431663 360 ntBASIC2.21□□□□□ -2.06
HOXC4P09017 GHRL-208ENST00000439975 326 ntTSL 1 (best) BASIC2.21□□□□□ -2.06
HOXC4P09017 LINC01758-201ENST00000448001 458 ntTSL 3 BASIC2.21□□□□□ -2.06
HOXC4P09017 MTAPP1-201ENST00000489154 819 ntBASIC2.21□□□□□ -2.06
HOXC4P09017 AC007182.2-201ENST00000489251 402 ntBASIC2.21□□□□□ -2.06
HOXC4P09017 AC034223.1-201ENST00000511054 599 ntTSL 3 BASIC2.21□□□□□ -2.06
HOXC4P09017 AC090572.1-201ENST00000519251 160 ntBASIC2.21□□□□□ -2.06
HOXC4P09017 ATP5F1P5-201ENST00000526403 760 ntBASIC2.21□□□□□ -2.06
HOXC4P09017 HTN3-202ENST00000526767 578 ntAPPRIS P2 TSL 1 (best) BASIC2.21□□□□□ -2.06
HOXC4P09017 AP001893.2-201ENST00000526949 202 ntBASIC2.21□□□□□ -2.06
HOXC4P09017 SNHG1-210ENST00000539303 240 ntTSL 3 BASIC2.21□□□□□ -2.06
HOXC4P09017 SUB1P2-201ENST00000556401 297 ntBASIC2.21□□□□□ -2.06
HOXC4P09017 OR1M4P-201ENST00000589199 287 ntBASIC2.21□□□□□ -2.06
HOXC4P09017 AL645944.1-201ENST00000603857 493 ntBASIC2.21□□□□□ -2.06
HOXC4P09017 AC007038.2-201ENST00000608095 740 ntBASIC2.21□□□□□ -2.06
HOXC4P09017 AC103710.2-201ENST00000609912 942 ntBASIC2.21□□□□□ -2.06
HOXC4P09017 AC245517.5-201ENST00000611529 162 ntBASIC2.21□□□□□ -2.06
HOXC4P09017 AL355073.2-201ENST00000612106 557 ntBASIC2.21□□□□□ -2.06
HOXC4P09017 AC034102.8-201ENST00000615146 484 ntBASIC2.21□□□□□ -2.06
HOXC4P09017 AC026523.1-201ENST00000617221 490 ntTSL 5 BASIC2.21□□□□□ -2.06
HOXC4P09017 COMMD6-213ENST00000626103 120 ntTSL 5 BASIC2.21□□□□□ -2.06
HOXC4P09017 SERPINI2-209ENST00000616363 1769 ntTSL 5 BASIC2.21□□□□□ -2.06
HOXC4P09017 SNORA68.1-201ENST00000364537 132 ntBASIC2.2□□□□□ -2.06
HOXC4P09017 Y_RNA.303-201ENST00000364998 94 ntBASIC2.2□□□□□ -2.06
HOXC4P09017 AKR1C1-201ENST00000380859 858 ntTSL 3 BASIC2.2□□□□□ -2.06
HOXC4P09017 RNU6-483P-201ENST00000384088 108 ntBASIC2.2□□□□□ -2.06
HOXC4P09017 RNU6-39P-201ENST00000384344 107 ntBASIC2.2□□□□□ -2.06
HOXC4P09017 MIR1-2-201ENST00000384961 85 ntBASIC2.2□□□□□ -2.06
HOXC4P09017 AL078595.1-201ENST00000404458 226 ntBASIC2.2□□□□□ -2.06
HOXC4P09017 CTNNA2-204ENST00000409266 432 ntTSL 3 BASIC2.2□□□□□ -2.06
HOXC4P09017 Y_RNA.604-201ENST00000410574 102 ntBASIC2.2□□□□□ -2.06
HOXC4P09017 USP9YP6-201ENST00000413550 854 ntBASIC2.2□□□□□ -2.06
HOXC4P09017 AC003092.1-201ENST00000415536 639 ntTSL 3 BASIC2.2□□□□□ -2.06
HOXC4P09017 USP9YP27-201ENST00000418455 438 ntBASIC2.2□□□□□ -2.06
HOXC4P09017 ELOCP14-201ENST00000428070 331 ntBASIC2.2□□□□□ -2.06
HOXC4P09017 LINC01626-201ENST00000431997 452 ntTSL 3 BASIC2.2□□□□□ -2.06
HOXC4P09017 AC119618.1-201ENST00000434191 222 ntBASIC2.2□□□□□ -2.06
HOXC4P09017 AL135923.2-201ENST00000435444 501 ntTSL 2 BASIC2.2□□□□□ -2.06
HOXC4P09017 AL121890.1-201ENST00000435457 205 ntBASIC2.2□□□□□ -2.06
HOXC4P09017 ELOCP7-201ENST00000439968 331 ntBASIC2.2□□□□□ -2.06
HOXC4P09017 AL359853.2-201ENST00000442108 353 ntTSL 2 BASIC2.2□□□□□ -2.06
HOXC4P09017 NFU1P2-201ENST00000448700 469 ntBASIC2.2□□□□□ -2.06
HOXC4P09017 AL513124.1-201ENST00000450410 614 ntBASIC2.2□□□□□ -2.06
HOXC4P09017 AC004888.1-201ENST00000450480 547 ntTSL 2 BASIC2.2□□□□□ -2.06
HOXC4P09017 AC013269.3-201ENST00000450486 444 ntTSL 3 BASIC2.2□□□□□ -2.06
HOXC4P09017 LINC01766-201ENST00000453968 362 ntTSL 3 BASIC2.2□□□□□ -2.06
HOXC4P09017 AL445465.2-201ENST00000455530 461 ntTSL 2 BASIC2.2□□□□□ -2.06
HOXC4P09017 AC117386.2-202ENST00000472821 522 ntTSL 3 BASIC2.2□□□□□ -2.06
HOXC4P09017 MRPL42P6-201ENST00000486397 371 ntBASIC2.2□□□□□ -2.06
HOXC4P09017 RPS15AP34-201ENST00000487776 387 ntBASIC2.2□□□□□ -2.06
HOXC4P09017 AC079804.2-201ENST00000490376 200 ntBASIC2.2□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 144.8 ms