Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 PLCXD2-AS1-201ENST00000493131 491 ntTSL 3 BASIC2.58□□□□□ -2
SIX3O95343 AL359273.1-202ENST00000505585 905 ntTSL 1 (best) BASIC2.58□□□□□ -2
SIX3O95343 ARL2BPP4-201ENST00000506854 471 ntBASIC2.58□□□□□ -2
SIX3O95343 AC117532.1-201ENST00000514638 323 ntBASIC2.58□□□□□ -2
SIX3O95343 AC068992.1-202ENST00000519280 270 ntTSL 3 BASIC2.58□□□□□ -2
SIX3O95343 AP004607.1-201ENST00000524456 203 ntBASIC2.58□□□□□ -2
SIX3O95343 OR5AQ1P-201ENST00000527596 927 ntBASIC2.58□□□□□ -2
SIX3O95343 AC010186.2-204ENST00000537668 439 ntBASIC2.58□□□□□ -2
SIX3O95343 LINC02305-201ENST00000554142 476 ntTSL 3 BASIC2.58□□□□□ -2
SIX3O95343 SUB1P2-201ENST00000556401 297 ntBASIC2.58□□□□□ -2
SIX3O95343 AC126323.6-201ENST00000561701 451 ntTSL 3 BASIC2.58□□□□□ -2
SIX3O95343 AC023824.2-201ENST00000566185 400 ntBASIC2.58□□□□□ -2
SIX3O95343 AC138761.3-201ENST00000579993 334 ntBASIC2.58□□□□□ -2
SIX3O95343 AC119751.7-201ENST00000600494 245 ntBASIC2.58□□□□□ -2
SIX3O95343 AC073648.5-201ENST00000603502 305 ntBASIC2.58□□□□□ -2
SIX3O95343 AC098614.4-201ENST00000607601 462 ntBASIC2.58□□□□□ -2
SIX3O95343 AC096772.1-201ENST00000609146 564 ntBASIC2.58□□□□□ -2
SIX3O95343 GPR171-203ENST00000617554 960 ntAPPRIS P1 BASIC2.58□□□□□ -2
SIX3O95343 AC022079.1-201ENST00000621546 602 ntBASIC2.58□□□□□ -2
SIX3O95343 WDR3-201ENST00000349139 9974 ntAPPRIS P1 TSL 1 (best) BASIC2.58□□□□□ -2
SIX3O95343 MAP3K2-203ENST00000409947 10992 ntAPPRIS P1 TSL 1 (best) BASIC2.57□□□□□ -2
SIX3O95343 EFR3A-202ENST00000519656 5247 ntTSL 1 (best) BASIC2.57□□□□□ -2
SIX3O95343 VTRNA1-1-201ENST00000363120 99 ntBASIC2.57□□□□□ -2
SIX3O95343 RNU6-181P-201ENST00000363225 107 ntBASIC2.57□□□□□ -2
SIX3O95343 MIR578-201ENST00000384828 96 ntBASIC2.57□□□□□ -2
SIX3O95343 MIR454-201ENST00000390180 115 ntBASIC2.57□□□□□ -2
SIX3O95343 RNU6-220P-201ENST00000390919 107 ntBASIC2.57□□□□□ -2
SIX3O95343 ATP13A5-AS1-201ENST00000414634 476 ntTSL 3 BASIC2.57□□□□□ -2
SIX3O95343 OR6C66P-201ENST00000414917 930 ntBASIC2.57□□□□□ -2
SIX3O95343 AC097463.2-201ENST00000421074 142 ntBASIC2.57□□□□□ -2
SIX3O95343 AC093151.3-203ENST00000422305 514 ntTSL 3 BASIC2.57□□□□□ -2
SIX3O95343 RPL30P4-201ENST00000429309 333 ntBASIC2.57□□□□□ -2
SIX3O95343 AL365400.1-201ENST00000431854 640 ntBASIC2.57□□□□□ -2
SIX3O95343 AC092802.2-202ENST00000444665 371 ntTSL 5 BASIC2.57□□□□□ -2
SIX3O95343 RGS5-217ENST00000451759 835 ntTSL 3 BASIC2.57□□□□□ -2
SIX3O95343 RPS29P15-201ENST00000458329 171 ntBASIC2.57□□□□□ -2
SIX3O95343 AC117522.2-201ENST00000510049 657 ntBASIC2.57□□□□□ -2
SIX3O95343 MTCO3P28-201ENST00000513351 515 ntBASIC2.57□□□□□ -2
SIX3O95343 SMURF2P1-201ENST00000514992 481 ntBASIC2.57□□□□□ -2
SIX3O95343 RNU6-445P-201ENST00000516949 107 ntBASIC2.57□□□□□ -2
SIX3O95343 LINC00824-201ENST00000517583 805 ntTSL 5 BASIC2.57□□□□□ -2
SIX3O95343 AP001189.6-201ENST00000528781 831 ntTSL 1 (best) BASIC2.57□□□□□ -2
SIX3O95343 AP002963.1-201ENST00000530590 184 ntBASIC2.57□□□□□ -2
SIX3O95343 AC090023.1-201ENST00000545750 443 ntTSL 3 BASIC2.57□□□□□ -2
SIX3O95343 AC127894.1-201ENST00000548266 851 ntTSL 3 BASIC2.57□□□□□ -2
SIX3O95343 AC015712.3-201ENST00000559380 164 ntBASIC2.57□□□□□ -2
SIX3O95343 LINC01290-201ENST00000566787 502 ntTSL 2 BASIC2.57□□□□□ -2
SIX3O95343 MIR4319-201ENST00000577285 85 ntBASIC2.57□□□□□ -2
SIX3O95343 C17orf112-201ENST00000623702 835 ntTSL 2 BASIC2.57□□□□□ -2
SIX3O95343 ATM-228ENST00000639240 498 ntTSL 5 BASIC2.57□□□□□ -2
SIX3O95343 HSFY2-201ENST00000304790 1444 ntAPPRIS P5 TSL 1 (best) BASIC2.57□□□□□ -2
SIX3O95343 HSFY1-201ENST00000307393 1444 ntAPPRIS P5 TSL 1 (best) BASIC2.57□□□□□ -2
SIX3O95343 PIK3C2G-206ENST00000538779 4963 ntTSL 5 BASIC2.57□□□□□ -2
SIX3O95343 ZNF72P-201ENST00000425869 1908 ntBASIC2.56□□□□□ -2
SIX3O95343 DEFB107A-201ENST00000335021 389 ntAPPRIS P1 TSL 1 (best) BASIC2.56□□□□□ -2
SIX3O95343 DEFB107B-201ENST00000355602 389 ntAPPRIS P1 TSL 1 (best) BASIC2.56□□□□□ -2
SIX3O95343 RNU6-282P-201ENST00000365357 103 ntBASIC2.56□□□□□ -2
SIX3O95343 SNORA75B-201ENST00000384053 137 ntBASIC2.56□□□□□ -2
SIX3O95343 MIR518D-201ENST00000385014 87 ntBASIC2.56□□□□□ -2
SIX3O95343 NUP35P1-201ENST00000422734 947 ntBASIC2.56□□□□□ -2
SIX3O95343 MTCO3P30-201ENST00000426425 670 ntBASIC2.56□□□□□ -2
SIX3O95343 MTCO3P5-201ENST00000433620 714 ntBASIC2.56□□□□□ -2
SIX3O95343 AL157937.1-201ENST00000435092 443 ntTSL 3 BASIC2.56□□□□□ -2
SIX3O95343 AC092573.2-202ENST00000437243 336 ntTSL 3 BASIC2.56□□□□□ -2
SIX3O95343 NFIA-AS1-201ENST00000442027 384 ntTSL 2 BASIC2.56□□□□□ -2
SIX3O95343 RPL23AP20-201ENST00000447965 421 ntBASIC2.56□□□□□ -2
SIX3O95343 AL138900.1-201ENST00000449345 399 ntTSL 3 BASIC2.56□□□□□ -2
SIX3O95343 C1DP4-201ENST00000455429 424 ntBASIC2.56□□□□□ -2
SIX3O95343 AC079382.1-201ENST00000493346 557 ntBASIC2.56□□□□□ -2
SIX3O95343 AC010424.1-201ENST00000506336 297 ntBASIC2.56□□□□□ -2
SIX3O95343 RN7SKP298-201ENST00000515950 94 ntBASIC2.56□□□□□ -2
SIX3O95343 RNU6-826P-201ENST00000516827 104 ntBASIC2.56□□□□□ -2
SIX3O95343 RNU6-430P-201ENST00000517078 107 ntBASIC2.56□□□□□ -2
SIX3O95343 RNU6-685P-201ENST00000517088 95 ntBASIC2.56□□□□□ -2
SIX3O95343 AC022695.3-201ENST00000523385 478 ntTSL 3 BASIC2.56□□□□□ -2
SIX3O95343 AC009163.5-201ENST00000575421 637 ntBASIC2.56□□□□□ -2
SIX3O95343 ELOCP29-201ENST00000588193 334 ntBASIC2.56□□□□□ -2
SIX3O95343 NCRUPAR_2.1-201ENST00000616308 99 ntBASIC2.56□□□□□ -2
SIX3O95343 HOTAIRM1_5.1-201ENST00000619311 145 ntBASIC2.56□□□□□ -2
SIX3O95343 AC026585.1-201ENST00000619582 524 ntBASIC2.56□□□□□ -2
SIX3O95343 AL596220.1-201ENST00000622121 542 ntTSL 4 BASIC2.56□□□□□ -2
SIX3O95343 TSGA10-205ENST00000410001 3036 ntAPPRIS P2 TSL 1 (best) BASIC2.56□□□□□ -2
SIX3O95343 APC-201ENST00000257430 10701 ntAPPRIS P1 TSL 5 BASIC2.55□□□□□ -2
SIX3O95343 THOC2-201ENST00000245838 5609 ntAPPRIS P1 TSL 5 BASIC2.55□□□□□ -2
SIX3O95343 PIK3CA-201ENST00000263967 9093 ntAPPRIS P1 TSL 2 BASIC2.55□□□□□ -2
SIX3O95343 BCHE-201ENST00000264381 2454 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
SIX3O95343 Y_RNA.77-201ENST00000362962 107 ntBASIC2.55□□□□□ -2
SIX3O95343 SNORD14B-201ENST00000364533 90 ntBASIC2.55□□□□□ -2
SIX3O95343 TSLP-202ENST00000379706 2411 ntTSL 1 (best) BASIC2.55□□□□□ -2
SIX3O95343 RNU2-9P-201ENST00000410194 145 ntBASIC2.55□□□□□ -2
SIX3O95343 AC000123.1-201ENST00000418215 516 ntTSL 5 BASIC2.55□□□□□ -2
SIX3O95343 MTCO2P34-201ENST00000421994 607 ntBASIC2.55□□□□□ -2
SIX3O95343 AL162726.4-201ENST00000422010 673 ntTSL 5 BASIC2.55□□□□□ -2
SIX3O95343 MICF-203ENST00000432679 129 ntBASIC2.55□□□□□ -2
SIX3O95343 AC023590.1-204ENST00000434023 431 ntTSL 5 BASIC2.55□□□□□ -2
SIX3O95343 MTND4P32-201ENST00000437189 1237 ntBASIC2.55□□□□□ -2
SIX3O95343 AC011816.1-201ENST00000441346 546 ntBASIC2.55□□□□□ -2
SIX3O95343 AL354936.1-201ENST00000441521 649 ntTSL 5 BASIC2.55□□□□□ -2
SIX3O95343 AL359853.2-201ENST00000442108 353 ntTSL 2 BASIC2.55□□□□□ -2
SIX3O95343 MTND1P18-201ENST00000448191 573 ntBASIC2.55□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 85.4 ms