Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 ATP13A3-203ENST00000439040 7720 ntAPPRIS P1 TSL 5 BASIC3.4□□□□□ -1.87
HOXA3O43365 Z75746.1-201ENST00000440243 2080 ntBASIC3.4□□□□□ -1.87
HOXA3O43365 STON1-GTF2A1L-203ENST00000402114 3790 ntTSL 2 BASIC3.4□□□□□ -1.87
HOXA3O43365 OR13G1-202ENST00000642119 2568 ntAPPRIS P1 BASIC3.4□□□□□ -1.87
HOXA3O43365 FAM126B-202ENST00000418596 9333 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
HOXA3O43365 SRP72P2-201ENST00000344851 1979 ntBASIC3.4□□□□□ -1.87
HOXA3O43365 AC011266.1-201ENST00000624119 3569 ntBASIC3.4□□□□□ -1.87
HOXA3O43365 OR6C2-203ENST00000641516 1682 ntAPPRIS P1 BASIC3.39□□□□□ -1.87
HOXA3O43365 LBR-202ENST00000338179 3812 ntAPPRIS P1 TSL 5 BASIC3.39□□□□□ -1.87
HOXA3O43365 KNTC1-201ENST00000333479 6975 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
HOXA3O43365 SLC44A5-202ENST00000370859 3896 ntAPPRIS ALT2 TSL 2 BASIC3.39□□□□□ -1.87
HOXA3O43365 AC068254.2-201ENST00000623938 3577 ntBASIC3.39□□□□□ -1.87
HOXA3O43365 PIGW-206ENST00000620233 2264 ntAPPRIS P1 TSL 2 BASIC3.39□□□□□ -1.87
HOXA3O43365 AC090740.1-201ENST00000623193 2262 ntBASIC3.39□□□□□ -1.87
HOXA3O43365 Y_RNA.358-201ENST00000365491 99 ntBASIC3.39□□□□□ -1.87
HOXA3O43365 Y_RNA.447-201ENST00000384184 113 ntBASIC3.39□□□□□ -1.87
HOXA3O43365 Y_RNA.489-201ENST00000384410 101 ntBASIC3.39□□□□□ -1.87
HOXA3O43365 RNU1-44P-201ENST00000384453 163 ntBASIC3.39□□□□□ -1.87
HOXA3O43365 MIR554-201ENST00000384874 96 ntBASIC3.39□□□□□ -1.87
HOXA3O43365 MT-TR-201ENST00000387439 65 ntBASIC3.39□□□□□ -1.87
HOXA3O43365 RPL23AP48-201ENST00000406913 488 ntBASIC3.39□□□□□ -1.87
HOXA3O43365 RPL26P27-201ENST00000414397 437 ntBASIC3.39□□□□□ -1.87
HOXA3O43365 LINC00428-201ENST00000415620 227 ntTSL 5 BASIC3.39□□□□□ -1.87
HOXA3O43365 RAC1P3-201ENST00000416129 580 ntBASIC3.39□□□□□ -1.87
HOXA3O43365 AL591043.1-201ENST00000432461 424 ntBASIC3.39□□□□□ -1.87
HOXA3O43365 AL353748.1-201ENST00000440753 474 ntBASIC3.39□□□□□ -1.87
HOXA3O43365 AL513124.1-201ENST00000450410 614 ntBASIC3.39□□□□□ -1.87
HOXA3O43365 SNORD127-201ENST00000458892 86 ntBASIC3.39□□□□□ -1.87
HOXA3O43365 RPS29P19-201ENST00000479709 171 ntBASIC3.39□□□□□ -1.87
HOXA3O43365 AC008957.1-201ENST00000510740 478 ntTSL 3 BASIC3.39□□□□□ -1.87
HOXA3O43365 RNU2-53P-201ENST00000516257 147 ntBASIC3.39□□□□□ -1.87
HOXA3O43365 RNU2-58P-201ENST00000516403 183 ntBASIC3.39□□□□□ -1.87
HOXA3O43365 AC034114.1-201ENST00000520293 285 ntBASIC3.39□□□□□ -1.87
HOXA3O43365 IGKV2D-19-201ENST00000523346 262 ntBASIC3.39□□□□□ -1.87
HOXA3O43365 AC069240.1-201ENST00000548774 375 ntBASIC3.39□□□□□ -1.87
HOXA3O43365 IGHV4OR15-8-201ENST00000557788 353 ntAPPRIS P1 BASIC3.39□□□□□ -1.87
HOXA3O43365 AC126323.6-201ENST00000561701 451 ntTSL 3 BASIC3.39□□□□□ -1.87
HOXA3O43365 AC005357.1-201ENST00000588399 301 ntBASIC3.39□□□□□ -1.87
HOXA3O43365 AC010201.1-201ENST00000605051 540 ntBASIC3.39□□□□□ -1.87
HOXA3O43365 MIR92B-201ENST00000607575 96 ntBASIC3.39□□□□□ -1.87
HOXA3O43365 AC016747.2-202ENST00000607743 332 ntTSL 5 BASIC3.39□□□□□ -1.87
HOXA3O43365 AL110115.1-201ENST00000614396 364 ntBASIC3.39□□□□□ -1.87
HOXA3O43365 AC103858.2-201ENST00000621471 543 ntBASIC3.39□□□□□ -1.87
HOXA3O43365 AC135068.2-201ENST00000622410 353 ntAPPRIS P1 BASIC3.39□□□□□ -1.87
HOXA3O43365 AC243829.7-201ENST00000633081 225 ntBASIC3.39□□□□□ -1.87
HOXA3O43365 AC241585.2-209ENST00000638217 143 ntBASIC3.39□□□□□ -1.87
HOXA3O43365 ADAT2-203ENST00000606514 6651 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
HOXA3O43365 GPRC6A-201ENST00000310357 2860 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
HOXA3O43365 RXFP1-201ENST00000307765 3842 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
HOXA3O43365 FAM35BP-202ENST00000497389 3337 ntBASIC3.39□□□□□ -1.87
HOXA3O43365 LINC01247-201ENST00000448901 4209 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
HOXA3O43365 LINC02471-203ENST00000641941 4752 ntBASIC3.39□□□□□ -1.87
HOXA3O43365 AL391684.1-201ENST00000416191 2998 ntTSL 5 BASIC3.39□□□□□ -1.87
HOXA3O43365 LINC00283-201ENST00000430111 1947 ntTSL 5 BASIC3.38□□□□□ -1.87
HOXA3O43365 AC009541.1-201ENST00000438279 2662 ntBASIC3.38□□□□□ -1.87
HOXA3O43365 RC3H2-203ENST00000373670 9248 ntAPPRIS P1 TSL 5 BASIC3.38□□□□□ -1.87
HOXA3O43365 KCNT2-202ENST00000367433 5883 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
HOXA3O43365 LRMP-201ENST00000354454 2504 ntAPPRIS P2 TSL 1 (best) BASIC3.38□□□□□ -1.87
HOXA3O43365 SLC15A5-201ENST00000344941 2923 ntAPPRIS P1 TSL 5 BASIC3.38□□□□□ -1.87
HOXA3O43365 U3.13-201ENST00000364804 214 ntBASIC3.38□□□□□ -1.87
HOXA3O43365 CLDN10-202ENST00000376855 701 ntTSL 2 BASIC3.38□□□□□ -1.87
HOXA3O43365 RNU6-611P-201ENST00000384276 104 ntBASIC3.38□□□□□ -1.87
HOXA3O43365 MIR708-201ENST00000390708 88 ntBASIC3.38□□□□□ -1.87
HOXA3O43365 MIR888-201ENST00000401186 77 ntBASIC3.38□□□□□ -1.87
HOXA3O43365 RNA5SP239-201ENST00000410218 129 ntBASIC3.38□□□□□ -1.87
HOXA3O43365 MIR1911-201ENST00000410783 80 ntBASIC3.38□□□□□ -1.87
HOXA3O43365 RN7SKP58-201ENST00000411010 305 ntBASIC3.38□□□□□ -1.87
HOXA3O43365 AL445259.1-203ENST00000427828 251 ntTSL 3 BASIC3.38□□□□□ -1.87
HOXA3O43365 AL355303.1-201ENST00000428920 680 ntTSL 3 BASIC3.38□□□□□ -1.87
HOXA3O43365 RPS6P12-201ENST00000432491 726 ntBASIC3.38□□□□□ -1.87
HOXA3O43365 AC010975.1-201ENST00000443301 669 ntTSL 3 BASIC3.38□□□□□ -1.87
HOXA3O43365 RPL37P4-201ENST00000448908 268 ntBASIC3.38□□□□□ -1.87
HOXA3O43365 RNU6-1132P-201ENST00000459214 107 ntBASIC3.38□□□□□ -1.87
HOXA3O43365 RNU7-87P-201ENST00000459343 62 ntBASIC3.38□□□□□ -1.87
HOXA3O43365 RN7SL604P-201ENST00000492589 296 ntBASIC3.38□□□□□ -1.87
HOXA3O43365 AC063944.1-201ENST00000496943 295 ntTSL 3 BASIC3.38□□□□□ -1.87
HOXA3O43365 RNU1-45P-201ENST00000517191 141 ntBASIC3.38□□□□□ -1.87
HOXA3O43365 AC091144.1-201ENST00000519573 138 ntBASIC3.38□□□□□ -1.87
HOXA3O43365 AC100770.1-201ENST00000532310 322 ntBASIC3.38□□□□□ -1.87
HOXA3O43365 MRPS36P4-201ENST00000534436 298 ntBASIC3.38□□□□□ -1.87
HOXA3O43365 HSPE1P20-201ENST00000538133 289 ntBASIC3.38□□□□□ -1.87
HOXA3O43365 AL163973.3-201ENST00000547093 430 ntTSL 3 BASIC3.38□□□□□ -1.87
HOXA3O43365 AC087749.1-202ENST00000585020 566 ntTSL 2 BASIC3.38□□□□□ -1.87
HOXA3O43365 AC006130.2-201ENST00000586202 326 ntBASIC3.38□□□□□ -1.87
HOXA3O43365 MIR663AHG-231ENST00000609044 590 ntTSL 5 BASIC3.38□□□□□ -1.87
HOXA3O43365 AL442067.1-201ENST00000613261 223 ntBASIC3.38□□□□□ -1.87
HOXA3O43365 AC004825.2-201ENST00000616634 455 ntBASIC3.38□□□□□ -1.87
HOXA3O43365 AL359313.1-202ENST00000635073 544 ntTSL 4 BASIC3.38□□□□□ -1.87
HOXA3O43365 TOPORSLP1-203ENST00000493279 2871 ntTSL 4 BASIC3.38□□□□□ -1.87
HOXA3O43365 RAPH1-203ENST00000374493 3909 ntAPPRIS ALT2 TSL 5 BASIC3.38□□□□□ -1.87
HOXA3O43365 SNX16-212ENST00000615066 1918 ntTSL 5 BASIC3.38□□□□□ -1.87
HOXA3O43365 ENOX2-202ENST00000370927 3788 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
HOXA3O43365 LINC00907-209ENST00000593234 3376 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
HOXA3O43365 AC010615.1-201ENST00000594254 1764 ntBASIC3.38□□□□□ -1.87
HOXA3O43365 OXR1-206ENST00000449762 2621 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
HOXA3O43365 STAU2-207ENST00000519961 3928 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
HOXA3O43365 C1orf112-203ENST00000413811 2661 ntAPPRIS ALT2 TSL 1 (best) BASIC3.37□□□□□ -1.87
HOXA3O43365 AL133412.1-201ENST00000380194 2992 ntBASIC3.37□□□□□ -1.87
HOXA3O43365 VEZT-201ENST00000261219 3435 ntTSL 5 BASIC3.37□□□□□ -1.87
HOXA3O43365 FAM169A-201ENST00000389156 5990 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 106.8 ms