Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 AP000936.2-201ENST00000447151 681 ntBASIC2.39□□□□□ -2.03
DDX28Q9NUL7 AP000477.2-201ENST00000447405 778 ntTSL 3 BASIC2.39□□□□□ -2.03
DDX28Q9NUL7 AL583843.1-201ENST00000456070 346 ntBASIC2.39□□□□□ -2.03
DDX28Q9NUL7 AL359915.2-203ENST00000457043 540 ntTSL 3 BASIC2.39□□□□□ -2.03
DDX28Q9NUL7 AC008700.1-202ENST00000513657 468 ntTSL 5 BASIC2.39□□□□□ -2.03
DDX28Q9NUL7 AC112206.3-201ENST00000514578 389 ntBASIC2.39□□□□□ -2.03
DDX28Q9NUL7 ACA59.2-201ENST00000517061 156 ntBASIC2.39□□□□□ -2.03
DDX28Q9NUL7 AC113145.1-201ENST00000522408 412 ntTSL 5 BASIC2.39□□□□□ -2.03
DDX28Q9NUL7 AC009127.3-201ENST00000570531 403 ntBASIC2.39□□□□□ -2.03
DDX28Q9NUL7 MIR4528-201ENST00000577763 90 ntBASIC2.39□□□□□ -2.03
DDX28Q9NUL7 RPS15AP11-201ENST00000594193 385 ntBASIC2.39□□□□□ -2.03
DDX28Q9NUL7 AC010620.1-201ENST00000601088 1102 ntBASIC2.39□□□□□ -2.03
DDX28Q9NUL7 DEFB131E-202ENST00000602581 683 ntBASIC2.39□□□□□ -2.03
DDX28Q9NUL7 AC006566.1-201ENST00000608943 513 ntBASIC2.39□□□□□ -2.03
DDX28Q9NUL7 DLEU2_1.1-201ENST00000612089 120 ntBASIC2.39□□□□□ -2.03
DDX28Q9NUL7 DLEU2_1.2-201ENST00000614667 120 ntBASIC2.39□□□□□ -2.03
DDX28Q9NUL7 GPR171-203ENST00000617554 960 ntAPPRIS P1 BASIC2.39□□□□□ -2.03
DDX28Q9NUL7 MIR7157-201ENST00000635801 60 ntBASIC2.39□□□□□ -2.03
DDX28Q9NUL7 U6.114-201ENST00000636407 96 ntBASIC2.39□□□□□ -2.03
DDX28Q9NUL7 CFHR4-204ENST00000608469 1601 ntTSL 1 (best) BASIC2.39□□□□□ -2.03
DDX28Q9NUL7 LMBRD1-201ENST00000370570 2099 ntTSL 1 (best) BASIC2.38□□□□□ -2.03
DDX28Q9NUL7 BCHE-201ENST00000264381 2454 ntAPPRIS P1 TSL 1 (best) BASIC2.38□□□□□ -2.03
DDX28Q9NUL7 RNU6-348P-201ENST00000384386 107 ntBASIC2.38□□□□□ -2.03
DDX28Q9NUL7 SNORA80E-201ENST00000384744 137 ntBASIC2.38□□□□□ -2.03
DDX28Q9NUL7 Y_RNA.576-201ENST00000384781 102 ntBASIC2.38□□□□□ -2.03
DDX28Q9NUL7 MIR196B-201ENST00000384852 84 ntBASIC2.38□□□□□ -2.03
DDX28Q9NUL7 FGFR1OP2P1-201ENST00000395943 500 ntBASIC2.38□□□□□ -2.03
DDX28Q9NUL7 AL390237.1-201ENST00000404226 1415 ntBASIC2.38□□□□□ -2.03
DDX28Q9NUL7 RNA5SP21-201ENST00000410917 96 ntBASIC2.38□□□□□ -2.03
DDX28Q9NUL7 AF274854.1-201ENST00000413236 615 ntBASIC2.38□□□□□ -2.03
DDX28Q9NUL7 AFDN-AS1-202ENST00000417244 182 ntTSL 2 BASIC2.38□□□□□ -2.03
DDX28Q9NUL7 AC000123.1-201ENST00000418215 516 ntTSL 5 BASIC2.38□□□□□ -2.03
DDX28Q9NUL7 AL365338.1-201ENST00000422282 858 ntBASIC2.38□□□□□ -2.03
DDX28Q9NUL7 AC241644.2-201ENST00000426504 480 ntTSL 3 BASIC2.38□□□□□ -2.03
DDX28Q9NUL7 AC063976.3-201ENST00000426849 329 ntBASIC2.38□□□□□ -2.03
DDX28Q9NUL7 AL024508.1-201ENST00000432477 505 ntTSL 2 BASIC2.38□□□□□ -2.03
DDX28Q9NUL7 PCYT1B-AS1-201ENST00000432626 275 ntTSL 2 BASIC2.38□□□□□ -2.03
DDX28Q9NUL7 AC112220.1-201ENST00000434628 355 ntBASIC2.38□□□□□ -2.03
DDX28Q9NUL7 FABP5P14-201ENST00000437273 393 ntBASIC2.38□□□□□ -2.03
DDX28Q9NUL7 AC004383.1-201ENST00000438135 289 ntBASIC2.38□□□□□ -2.03
DDX28Q9NUL7 AL359771.1-201ENST00000441809 379 ntTSL 5 BASIC2.38□□□□□ -2.03
DDX28Q9NUL7 CSN1S2AP-201ENST00000451783 779 ntTSL 1 (best) BASIC2.38□□□□□ -2.03
DDX28Q9NUL7 AL139109.1-201ENST00000455491 297 ntBASIC2.38□□□□□ -2.03
DDX28Q9NUL7 RPL31P3-201ENST00000458430 332 ntBASIC2.38□□□□□ -2.03
DDX28Q9NUL7 MTND4P2-201ENST00000507767 1203 ntBASIC2.38□□□□□ -2.03
DDX28Q9NUL7 AC117532.1-201ENST00000514638 323 ntBASIC2.38□□□□□ -2.03
DDX28Q9NUL7 AC074131.1-201ENST00000514662 253 ntTSL 2 BASIC2.38□□□□□ -2.03
DDX28Q9NUL7 SCARNA3-201ENST00000517097 143 ntBASIC2.38□□□□□ -2.03
DDX28Q9NUL7 AC022695.3-201ENST00000523385 478 ntTSL 3 BASIC2.38□□□□□ -2.03
DDX28Q9NUL7 OR5AQ1P-201ENST00000527596 927 ntBASIC2.38□□□□□ -2.03
DDX28Q9NUL7 AL356057.1-201ENST00000533798 831 ntBASIC2.38□□□□□ -2.03
DDX28Q9NUL7 AC090023.1-201ENST00000545750 443 ntTSL 3 BASIC2.38□□□□□ -2.03
DDX28Q9NUL7 AL352955.1-201ENST00000555490 332 ntTSL 3 BASIC2.38□□□□□ -2.03
DDX28Q9NUL7 LINC01570-201ENST00000561572 434 ntTSL 3 BASIC2.38□□□□□ -2.03
DDX28Q9NUL7 AC141273.1-201ENST00000565300 479 ntTSL 5 BASIC2.38□□□□□ -2.03
DDX28Q9NUL7 AC092325.1-201ENST00000566449 554 ntBASIC2.38□□□□□ -2.03
DDX28Q9NUL7 MIR4319-201ENST00000577285 85 ntBASIC2.38□□□□□ -2.03
DDX28Q9NUL7 MIR3913-1-201ENST00000577744 102 ntBASIC2.38□□□□□ -2.03
DDX28Q9NUL7 MIR4765-201ENST00000585007 77 ntBASIC2.38□□□□□ -2.03
DDX28Q9NUL7 AC135178.3-204ENST00000585181 451 ntTSL 2 BASIC2.38□□□□□ -2.03
DDX28Q9NUL7 AC119751.7-201ENST00000600494 245 ntBASIC2.38□□□□□ -2.03
DDX28Q9NUL7 RNASEH2B-AS1-206ENST00000601286 657 ntTSL 5 BASIC2.38□□□□□ -2.03
DDX28Q9NUL7 AC068790.2-201ENST00000602601 557 ntBASIC2.38□□□□□ -2.03
DDX28Q9NUL7 AC008121.1-201ENST00000603244 268 ntBASIC2.38□□□□□ -2.03
DDX28Q9NUL7 AL109809.4-201ENST00000603520 2185 ntBASIC2.38□□□□□ -2.03
DDX28Q9NUL7 AL138889.2-201ENST00000603883 242 ntBASIC2.38□□□□□ -2.03
DDX28Q9NUL7 AC013412.1-201ENST00000610687 192 ntBASIC2.38□□□□□ -2.03
DDX28Q9NUL7 AP001486.3-201ENST00000615334 372 ntBASIC2.38□□□□□ -2.03
DDX28Q9NUL7 AC099842.1-201ENST00000619919 596 ntBASIC2.38□□□□□ -2.03
DDX28Q9NUL7 OR51A7-202ENST00000641490 2186 ntAPPRIS P1 BASIC2.38□□□□□ -2.03
DDX28Q9NUL7 DNAH14-210ENST00000439375 13548 ntAPPRIS P1 TSL 5 BASIC2.38□□□□□ -2.03
DDX28Q9NUL7 AL359854.1-201ENST00000614203 1594 ntBASIC2.37□□□□□ -2.03
DDX28Q9NUL7 RNU6-181P-201ENST00000363225 107 ntBASIC2.37□□□□□ -2.03
DDX28Q9NUL7 RNU6-371P-201ENST00000364283 108 ntBASIC2.37□□□□□ -2.03
DDX28Q9NUL7 RNU1-100P-201ENST00000365255 165 ntBASIC2.37□□□□□ -2.03
DDX28Q9NUL7 EEF1E1-201ENST00000379715 1077 ntAPPRIS P1 TSL 1 (best) BASIC2.37□□□□□ -2.03
DDX28Q9NUL7 SNORD116-9-201ENST00000384000 95 ntBASIC2.37□□□□□ -2.03
DDX28Q9NUL7 SNORA18.3-201ENST00000384122 132 ntBASIC2.37□□□□□ -2.03
DDX28Q9NUL7 SNORA75-201ENST00000384158 137 ntBASIC2.37□□□□□ -2.03
DDX28Q9NUL7 SNORD116-3-201ENST00000384287 95 ntBASIC2.37□□□□□ -2.03
DDX28Q9NUL7 SNORD116-7-201ENST00000384404 95 ntBASIC2.37□□□□□ -2.03
DDX28Q9NUL7 SNORD116-5-201ENST00000384462 95 ntBASIC2.37□□□□□ -2.03
DDX28Q9NUL7 Y_RNA.553-201ENST00000384670 102 ntBASIC2.37□□□□□ -2.03
DDX28Q9NUL7 MIR454-201ENST00000390180 115 ntBASIC2.37□□□□□ -2.03
DDX28Q9NUL7 AL138827.1-201ENST00000402666 306 ntBASIC2.37□□□□□ -2.03
DDX28Q9NUL7 RNA5SP508-201ENST00000411327 119 ntBASIC2.37□□□□□ -2.03
DDX28Q9NUL7 AC104462.1-201ENST00000414565 447 ntTSL 2 BASIC2.37□□□□□ -2.03
DDX28Q9NUL7 AC093157.2-201ENST00000414686 671 ntTSL 5 BASIC2.37□□□□□ -2.03
DDX28Q9NUL7 AL138775.1-201ENST00000429539 575 ntTSL 1 (best) BASIC2.37□□□□□ -2.03
DDX28Q9NUL7 LINC00844-201ENST00000432535 477 ntTSL 2 BASIC2.37□□□□□ -2.03
DDX28Q9NUL7 MTCO3P5-201ENST00000433620 714 ntBASIC2.37□□□□□ -2.03
DDX28Q9NUL7 AC099566.1-201ENST00000442558 479 ntTSL 3 BASIC2.37□□□□□ -2.03
DDX28Q9NUL7 AC079448.1-201ENST00000449377 373 ntBASIC2.37□□□□□ -2.03
DDX28Q9NUL7 TSPY5P-202ENST00000456541 142 ntTSL 3 BASIC2.37□□□□□ -2.03
DDX28Q9NUL7 AC022364.2-201ENST00000457963 554 ntBASIC2.37□□□□□ -2.03
DDX28Q9NUL7 AC046136.1-201ENST00000459855 533 ntTSL 3 BASIC2.37□□□□□ -2.03
DDX28Q9NUL7 AKIRIN2P1-201ENST00000505898 352 ntBASIC2.37□□□□□ -2.03
DDX28Q9NUL7 AC113383.1-204ENST00000507060 552 ntTSL 3 BASIC2.37□□□□□ -2.03
DDX28Q9NUL7 AC104806.1-201ENST00000508720 308 ntBASIC2.37□□□□□ -2.03
DDX28Q9NUL7 AC097460.1-201ENST00000514624 590 ntTSL 3 BASIC2.37□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 119.3 ms