Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 AC008716.1-201ENST00000511084 513 ntBASIC2.65□□□□□ -1.99
CCDC3Q9BQI4 MEPE-206ENST00000511670 550 ntTSL 4 BASIC2.65□□□□□ -1.99
CCDC3Q9BQI4 RNU4ATAC8P-201ENST00000516196 109 ntBASIC2.65□□□□□ -1.99
CCDC3Q9BQI4 RGS4-209ENST00000531057 544 ntTSL 4 BASIC2.65□□□□□ -1.99
CCDC3Q9BQI4 LINC01495-202ENST00000534135 343 ntTSL 2 BASIC2.65□□□□□ -1.99
CCDC3Q9BQI4 HSPE1P20-201ENST00000538133 289 ntBASIC2.65□□□□□ -1.99
CCDC3Q9BQI4 OR5V1-216ENST00000543825 1048 ntAPPRIS P1 BASIC2.65□□□□□ -1.99
CCDC3Q9BQI4 AL157687.1-201ENST00000554853 619 ntBASIC2.65□□□□□ -1.99
CCDC3Q9BQI4 MTCO3P23-201ENST00000561363 289 ntBASIC2.65□□□□□ -1.99
CCDC3Q9BQI4 HMGB1P33-201ENST00000563485 527 ntBASIC2.65□□□□□ -1.99
CCDC3Q9BQI4 TPRKBP2-201ENST00000565969 475 ntBASIC2.65□□□□□ -1.99
CCDC3Q9BQI4 AC234778.2-201ENST00000566241 354 ntBASIC2.65□□□□□ -1.99
CCDC3Q9BQI4 MIR5692A1-201ENST00000580523 69 ntBASIC2.65□□□□□ -1.99
CCDC3Q9BQI4 AC007948.1-201ENST00000581632 242 ntTSL 5 BASIC2.65□□□□□ -1.99
CCDC3Q9BQI4 MIR3941-201ENST00000582572 103 ntBASIC2.65□□□□□ -1.99
CCDC3Q9BQI4 AC090772.1-201ENST00000583782 507 ntTSL 5 BASIC2.65□□□□□ -1.99
CCDC3Q9BQI4 MIR548AC-201ENST00000585049 88 ntBASIC2.65□□□□□ -1.99
CCDC3Q9BQI4 AC008752.3-201ENST00000588113 712 ntBASIC2.65□□□□□ -1.99
CCDC3Q9BQI4 AC068790.6-201ENST00000602558 258 ntBASIC2.65□□□□□ -1.99
CCDC3Q9BQI4 AL158032.1-201ENST00000605401 106 ntBASIC2.65□□□□□ -1.99
CCDC3Q9BQI4 AC126118.1-201ENST00000607744 628 ntBASIC2.65□□□□□ -1.99
CCDC3Q9BQI4 AC002064.3-201ENST00000623448 346 ntBASIC2.65□□□□□ -1.99
CCDC3Q9BQI4 OGN-202ENST00000375561 2743 ntAPPRIS P1 TSL 1 (best) BASIC2.64□□□□□ -1.99
CCDC3Q9BQI4 HSPA8P4-201ENST00000511877 1920 ntBASIC2.64□□□□□ -1.99
CCDC3Q9BQI4 GRAMD1C-202ENST00000440446 3475 ntTSL 1 (best) BASIC2.64□□□□□ -1.99
CCDC3Q9BQI4 ACTR6-212ENST00000552376 1659 ntTSL 5 BASIC2.64□□□□□ -1.99
CCDC3Q9BQI4 PLS1-201ENST00000337777 3755 ntAPPRIS P1 TSL 1 (best) BASIC2.64□□□□□ -1.99
CCDC3Q9BQI4 MIR133A1HG-202ENST00000581072 4226 ntTSL 1 (best) BASIC2.64□□□□□ -1.99
CCDC3Q9BQI4 OR4G2P-201ENST00000328113 903 ntBASIC2.64□□□□□ -1.99
CCDC3Q9BQI4 U3.12-201ENST00000364498 214 ntBASIC2.64□□□□□ -1.99
CCDC3Q9BQI4 Y_RNA.255-201ENST00000364581 97 ntBASIC2.64□□□□□ -1.99
CCDC3Q9BQI4 RNU6-1215P-201ENST00000384441 102 ntBASIC2.64□□□□□ -1.99
CCDC3Q9BQI4 RNU6-903P-201ENST00000391270 109 ntBASIC2.64□□□□□ -1.99
CCDC3Q9BQI4 AP003170.3-201ENST00000399123 158 ntTSL 5 BASIC2.64□□□□□ -1.99
CCDC3Q9BQI4 AL512633.1-201ENST00000399931 655 ntBASIC2.64□□□□□ -1.99
CCDC3Q9BQI4 RNA5SP344-201ENST00000411081 104 ntBASIC2.64□□□□□ -1.99
CCDC3Q9BQI4 USP9YP6-201ENST00000413550 854 ntBASIC2.64□□□□□ -1.99
CCDC3Q9BQI4 AC096649.2-201ENST00000416186 393 ntBASIC2.64□□□□□ -1.99
CCDC3Q9BQI4 AL353729.1-201ENST00000425044 720 ntBASIC2.64□□□□□ -1.99
CCDC3Q9BQI4 MTCO3P30-201ENST00000426425 670 ntBASIC2.64□□□□□ -1.99
CCDC3Q9BQI4 GYPB-201ENST00000429670 239 ntTSL 1 (best) BASIC2.64□□□□□ -1.99
CCDC3Q9BQI4 AL606489.2-201ENST00000433886 234 ntBASIC2.64□□□□□ -1.99
CCDC3Q9BQI4 AC016691.1-201ENST00000441321 413 ntBASIC2.64□□□□□ -1.99
CCDC3Q9BQI4 HMGN2P10-201ENST00000448085 265 ntBASIC2.64□□□□□ -1.99
CCDC3Q9BQI4 AC073415.1-201ENST00000449240 153 ntBASIC2.64□□□□□ -1.99
CCDC3Q9BQI4 LINC01828-202ENST00000450294 955 ntTSL 5 BASIC2.64□□□□□ -1.99
CCDC3Q9BQI4 FDX1P2-201ENST00000450769 375 ntBASIC2.64□□□□□ -1.99
CCDC3Q9BQI4 AL118520.1-201ENST00000450770 291 ntBASIC2.64□□□□□ -1.99
CCDC3Q9BQI4 AL109763.1-201ENST00000455391 461 ntTSL 2 BASIC2.64□□□□□ -1.99
CCDC3Q9BQI4 AC005062.1-201ENST00000457921 566 ntTSL 3 BASIC2.64□□□□□ -1.99
CCDC3Q9BQI4 RPS29P15-201ENST00000458329 171 ntBASIC2.64□□□□□ -1.99
CCDC3Q9BQI4 AC006512.1-201ENST00000468816 291 ntBASIC2.64□□□□□ -1.99
CCDC3Q9BQI4 RPL23AP11-201ENST00000475260 469 ntBASIC2.64□□□□□ -1.99
CCDC3Q9BQI4 UMAD1-204ENST00000482067 569 ntTSL 5 BASIC2.64□□□□□ -1.99
CCDC3Q9BQI4 SRI-210ENST00000490437 570 ntTSL 2 BASIC2.64□□□□□ -1.99
CCDC3Q9BQI4 AC022493.1-201ENST00000492984 337 ntBASIC2.64□□□□□ -1.99
CCDC3Q9BQI4 SAR1B-211ENST00000509937 455 ntTSL 5 BASIC2.64□□□□□ -1.99
CCDC3Q9BQI4 SNORA9.3-201ENST00000516383 129 ntBASIC2.64□□□□□ -1.99
CCDC3Q9BQI4 RNU6-1183P-201ENST00000517054 60 ntBASIC2.64□□□□□ -1.99
CCDC3Q9BQI4 SKP1-203ENST00000517625 876 ntAPPRIS P4 TSL 3 BASIC2.64□□□□□ -1.99
CCDC3Q9BQI4 AC025755.1-201ENST00000521306 278 ntBASIC2.64□□□□□ -1.99
CCDC3Q9BQI4 TAS2R43-201ENST00000531678 1027 ntAPPRIS P1 BASIC2.64□□□□□ -1.99
CCDC3Q9BQI4 AC016957.1-201ENST00000534895 309 ntBASIC2.64□□□□□ -1.99
CCDC3Q9BQI4 AC009269.3-201ENST00000558429 472 ntTSL 5 BASIC2.64□□□□□ -1.99
CCDC3Q9BQI4 MTATP6P3-201ENST00000581686 676 ntBASIC2.64□□□□□ -1.99
CCDC3Q9BQI4 HMGN2P15-201ENST00000585707 270 ntBASIC2.64□□□□□ -1.99
CCDC3Q9BQI4 AC090227.2-201ENST00000591105 340 ntTSL 5 BASIC2.64□□□□□ -1.99
CCDC3Q9BQI4 AC020895.1-201ENST00000595362 272 ntBASIC2.64□□□□□ -1.99
CCDC3Q9BQI4 AC008739.2-201ENST00000597006 317 ntBASIC2.64□□□□□ -1.99
CCDC3Q9BQI4 AL645944.1-201ENST00000603857 493 ntBASIC2.64□□□□□ -1.99
CCDC3Q9BQI4 AC092954.2-201ENST00000609103 430 ntBASIC2.64□□□□□ -1.99
CCDC3Q9BQI4 AC013562.2-201ENST00000611632 603 ntBASIC2.64□□□□□ -1.99
CCDC3Q9BQI4 TMEM154-204ENST00000613578 486 ntAPPRIS ALT2 TSL 5 BASIC2.64□□□□□ -1.99
CCDC3Q9BQI4 AC105265.4-201ENST00000618391 306 ntTSL 5 BASIC2.64□□□□□ -1.99
CCDC3Q9BQI4 SMIM2-AS1-204ENST00000619472 746 ntTSL 3 BASIC2.64□□□□□ -1.99
CCDC3Q9BQI4 CR381653.2-201ENST00000624041 768 ntBASIC2.64□□□□□ -1.99
CCDC3Q9BQI4 AC243829.7-201ENST00000633081 225 ntBASIC2.64□□□□□ -1.99
CCDC3Q9BQI4 GYPB-216ENST00000638448 363 ntAPPRIS P1 TSL 1 (best) BASIC2.64□□□□□ -1.99
CCDC3Q9BQI4 GPR183-201ENST00000376414 1700 ntAPPRIS P1 TSL 1 (best) BASIC2.64□□□□□ -1.99
CCDC3Q9BQI4 ARHGAP11A-207ENST00000565905 3318 ntTSL 2 BASIC2.64□□□□□ -1.99
CCDC3Q9BQI4 ZNF519P1-201ENST00000449011 1626 ntBASIC2.64□□□□□ -1.99
CCDC3Q9BQI4 SLC39A10-201ENST00000359634 5322 ntAPPRIS P1 TSL 1 (best) BASIC2.63□□□□□ -1.99
CCDC3Q9BQI4 Z82195.2-201ENST00000612348 18351 ntBASIC2.63□□□□□ -1.99
CCDC3Q9BQI4 MDM4-202ENST00000367180 547 ntTSL 3 BASIC2.63□□□□□ -1.99
CCDC3Q9BQI4 Y_RNA.516-201ENST00000384541 124 ntBASIC2.63□□□□□ -1.99
CCDC3Q9BQI4 CIR1P3-201ENST00000405137 479 ntBASIC2.63□□□□□ -1.99
CCDC3Q9BQI4 AC023141.4-201ENST00000412031 328 ntBASIC2.63□□□□□ -1.99
CCDC3Q9BQI4 AL353621.1-201ENST00000418219 243 ntBASIC2.63□□□□□ -1.99
CCDC3Q9BQI4 AL451060.1-203ENST00000431307 362 ntTSL 3 BASIC2.63□□□□□ -1.99
CCDC3Q9BQI4 AL359081.1-201ENST00000432083 615 ntTSL 2 BASIC2.63□□□□□ -1.99
CCDC3Q9BQI4 AL513328.1-201ENST00000446460 224 ntBASIC2.63□□□□□ -1.99
CCDC3Q9BQI4 FTH1P25-201ENST00000447665 469 ntBASIC2.63□□□□□ -1.99
CCDC3Q9BQI4 AL162395.1-201ENST00000457882 422 ntBASIC2.63□□□□□ -1.99
CCDC3Q9BQI4 AC003982.1-202ENST00000469928 248 ntBASIC2.63□□□□□ -1.99
CCDC3Q9BQI4 AC079140.5-201ENST00000507882 310 ntBASIC2.63□□□□□ -1.99
CCDC3Q9BQI4 AC096725.1-201ENST00000514266 313 ntBASIC2.63□□□□□ -1.99
CCDC3Q9BQI4 RNU6-835P-201ENST00000516974 104 ntBASIC2.63□□□□□ -1.99
CCDC3Q9BQI4 SNORD19.2-201ENST00000516978 73 ntBASIC2.63□□□□□ -1.99
CCDC3Q9BQI4 AC026470.3-201ENST00000563994 438 ntTSL 3 BASIC2.63□□□□□ -1.99
CCDC3Q9BQI4 AC025281.1-201ENST00000567026 265 ntBASIC2.63□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 96.2 ms