Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 PCNPP5-201ENST00000452246 481 ntBASIC3.85□□□□□ -1.79
CLIP3Q96DZ5 SNORD5.1-201ENST00000458800 75 ntBASIC3.85□□□□□ -1.79
CLIP3Q96DZ5 AC087884.1-201ENST00000469738 328 ntBASIC3.85□□□□□ -1.79
CLIP3Q96DZ5 AC025244.2-201ENST00000509215 422 ntTSL 3 BASIC3.85□□□□□ -1.79
CLIP3Q96DZ5 PKIA-203ENST00000518467 588 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
CLIP3Q96DZ5 AC068880.3-201ENST00000519185 179 ntTSL 5 BASIC3.85□□□□□ -1.79
CLIP3Q96DZ5 AC009803.1-201ENST00000551531 416 ntTSL 3 BASIC3.85□□□□□ -1.79
CLIP3Q96DZ5 AC021979.1-201ENST00000553822 336 ntTSL 3 BASIC3.85□□□□□ -1.79
CLIP3Q96DZ5 AC023906.2-201ENST00000558343 462 ntTSL 3 BASIC3.85□□□□□ -1.79
CLIP3Q96DZ5 AC007948.1-201ENST00000581632 242 ntTSL 5 BASIC3.85□□□□□ -1.79
CLIP3Q96DZ5 MIR3941-201ENST00000582572 103 ntBASIC3.85□□□□□ -1.79
CLIP3Q96DZ5 LUZP6-201ENST00000589735 177 ntAPPRIS P1 BASIC3.85□□□□□ -1.79
CLIP3Q96DZ5 GALP-203ENST00000590002 150 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
CLIP3Q96DZ5 RPS4XP16-203ENST00000596904 698 ntTSL 5 BASIC3.85□□□□□ -1.79
CLIP3Q96DZ5 AL589765.7-201ENST00000601684 629 ntTSL 3 BASIC3.85□□□□□ -1.79
CLIP3Q96DZ5 AC092447.9-201ENST00000603395 144 ntBASIC3.85□□□□□ -1.79
CLIP3Q96DZ5 AC027045.1-201ENST00000609065 202 ntTSL 5 BASIC3.85□□□□□ -1.79
CLIP3Q96DZ5 MIR6868-201ENST00000611215 58 ntBASIC3.85□□□□□ -1.79
CLIP3Q96DZ5 CSNK1G3-203ENST00000361991 2424 ntAPPRIS P3 TSL 1 (best) BASIC3.85□□□□□ -1.79
CLIP3Q96DZ5 BCLAF3-202ENST00000379682 3217 ntAPPRIS ALT2 TSL 5 BASIC3.85□□□□□ -1.79
CLIP3Q96DZ5 ERBB4-203ENST00000402597 11699 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
CLIP3Q96DZ5 PPIP5K2-201ENST00000321521 15407 ntAPPRIS P3 TSL 5 BASIC3.84□□□□□ -1.79
CLIP3Q96DZ5 FER-201ENST00000281092 12119 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
CLIP3Q96DZ5 RAD17-208ENST00000380774 2117 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
CLIP3Q96DZ5 AL359837.1-201ENST00000381357 287 ntBASIC3.84□□□□□ -1.79
CLIP3Q96DZ5 Y_RNA.389-201ENST00000383924 113 ntBASIC3.84□□□□□ -1.79
CLIP3Q96DZ5 Y_RNA.447-201ENST00000384184 113 ntBASIC3.84□□□□□ -1.79
CLIP3Q96DZ5 RNU6-472P-201ENST00000384299 107 ntBASIC3.84□□□□□ -1.79
CLIP3Q96DZ5 MIR23B-201ENST00000384832 97 ntBASIC3.84□□□□□ -1.79
CLIP3Q96DZ5 RNU4-61P-201ENST00000411243 107 ntBASIC3.84□□□□□ -1.79
CLIP3Q96DZ5 CYCSP19-201ENST00000411715 316 ntBASIC3.84□□□□□ -1.79
CLIP3Q96DZ5 AC099548.1-201ENST00000421443 426 ntBASIC3.84□□□□□ -1.79
CLIP3Q96DZ5 AL358472.1-201ENST00000431295 329 ntBASIC3.84□□□□□ -1.79
CLIP3Q96DZ5 LINC00630-205ENST00000440496 2101 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
CLIP3Q96DZ5 AC073325.1-201ENST00000443714 542 ntTSL 4 BASIC3.84□□□□□ -1.79
CLIP3Q96DZ5 AL121760.1-201ENST00000447206 346 ntTSL 2 BASIC3.84□□□□□ -1.79
CLIP3Q96DZ5 RNU7-167P-201ENST00000459160 62 ntBASIC3.84□□□□□ -1.79
CLIP3Q96DZ5 SNORA84-201ENST00000459229 133 ntBASIC3.84□□□□□ -1.79
CLIP3Q96DZ5 AC068781.1-201ENST00000488231 618 ntBASIC3.84□□□□□ -1.79
CLIP3Q96DZ5 AC022493.2-201ENST00000506122 481 ntBASIC3.84□□□□□ -1.79
CLIP3Q96DZ5 AL159163.1-201ENST00000507747 600 ntAPPRIS P1 TSL 5 BASIC3.84□□□□□ -1.79
CLIP3Q96DZ5 SLC25A15P5-201ENST00000508033 253 ntBASIC3.84□□□□□ -1.79
CLIP3Q96DZ5 RNU6-408P-201ENST00000515910 100 ntBASIC3.84□□□□□ -1.79
CLIP3Q96DZ5 SNORA31.1-201ENST00000515993 133 ntBASIC3.84□□□□□ -1.79
CLIP3Q96DZ5 SNORA31.5-201ENST00000516190 133 ntBASIC3.84□□□□□ -1.79
CLIP3Q96DZ5 Y_RNA.680-201ENST00000516441 93 ntBASIC3.84□□□□□ -1.79
CLIP3Q96DZ5 SCARNA16.2-201ENST00000516520 172 ntBASIC3.84□□□□□ -1.79
CLIP3Q96DZ5 RNU4-77P-201ENST00000516692 156 ntBASIC3.84□□□□□ -1.79
CLIP3Q96DZ5 SNORD116.3-201ENST00000517176 78 ntBASIC3.84□□□□□ -1.79
CLIP3Q96DZ5 RN7SL703P-201ENST00000578485 302 ntBASIC3.84□□□□□ -1.79
CLIP3Q96DZ5 MIR5685-201ENST00000579080 79 ntBASIC3.84□□□□□ -1.79
CLIP3Q96DZ5 AC006130.2-201ENST00000586202 326 ntBASIC3.84□□□□□ -1.79
CLIP3Q96DZ5 AC009271.1-202ENST00000588803 492 ntTSL 3 BASIC3.84□□□□□ -1.79
CLIP3Q96DZ5 AC011494.1-201ENST00000596454 237 ntBASIC3.84□□□□□ -1.79
CLIP3Q96DZ5 AC008785.1-201ENST00000624475 456 ntBASIC3.84□□□□□ -1.79
CLIP3Q96DZ5 PROX1-AS1-244ENST00000630355 599 ntTSL 5 BASIC3.84□□□□□ -1.79
CLIP3Q96DZ5 SPTY2D1-AS1-205ENST00000635674 450 ntAPPRIS ALT2 TSL 2 BASIC3.84□□□□□ -1.79
CLIP3Q96DZ5 GYPB-216ENST00000638448 363 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
CLIP3Q96DZ5 TET2-204ENST00000413648 4973 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
CLIP3Q96DZ5 SMC1B-201ENST00000357450 4201 ntAPPRIS P1 TSL 5 BASIC3.84□□□□□ -1.79
CLIP3Q96DZ5 LIPI-203ENST00000536861 1529 ntAPPRIS ALT2 TSL 1 (best) BASIC3.84□□□□□ -1.8
CLIP3Q96DZ5 CCNT2-201ENST00000264157 6917 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.8
CLIP3Q96DZ5 PCLO-206ENST00000437081 3786 ntTSL 1 (best) BASIC3.84□□□□□ -1.8
CLIP3Q96DZ5 DTNA-208ENST00000554864 1680 ntAPPRIS ALT2 TSL 1 (best) BASIC3.84□□□□□ -1.8
CLIP3Q96DZ5 CYYR1-AS1-201ENST00000357401 3412 ntTSL 2 BASIC3.83□□□□□ -1.8
CLIP3Q96DZ5 PPIP5K2-217ENST00000627916 6010 ntAPPRIS ALT2 TSL 5 BASIC3.83□□□□□ -1.8
CLIP3Q96DZ5 SPINK1-201ENST00000296695 542 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
CLIP3Q96DZ5 ACEA_U3.1-201ENST00000363057 217 ntBASIC3.83□□□□□ -1.8
CLIP3Q96DZ5 Y_RNA.428-201ENST00000384078 102 ntBASIC3.83□□□□□ -1.8
CLIP3Q96DZ5 RNU6-434P-201ENST00000384376 107 ntBASIC3.83□□□□□ -1.8
CLIP3Q96DZ5 RNU6-393P-201ENST00000384475 107 ntBASIC3.83□□□□□ -1.8
CLIP3Q96DZ5 MIR578-201ENST00000384828 96 ntBASIC3.83□□□□□ -1.8
CLIP3Q96DZ5 SNAP23-203ENST00000397138 477 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
CLIP3Q96DZ5 AL355989.1-202ENST00000419406 408 ntTSL 3 BASIC3.83□□□□□ -1.8
CLIP3Q96DZ5 HMGN2P30-201ENST00000423237 256 ntBASIC3.83□□□□□ -1.8
CLIP3Q96DZ5 CEP57L1P1-201ENST00000430943 1201 ntBASIC3.83□□□□□ -1.8
CLIP3Q96DZ5 PLCB1-IT1-201ENST00000441231 373 ntTSL 3 BASIC3.83□□□□□ -1.8
CLIP3Q96DZ5 NOTCH2P1-201ENST00000443481 624 ntBASIC3.83□□□□□ -1.8
CLIP3Q96DZ5 AC112492.4-201ENST00000456549 352 ntBASIC3.83□□□□□ -1.8
CLIP3Q96DZ5 OARD1-209ENST00000471367 401 ntTSL 2 BASIC3.83□□□□□ -1.8
CLIP3Q96DZ5 RPL21P129-201ENST00000491732 478 ntBASIC3.83□□□□□ -1.8
CLIP3Q96DZ5 AC139453.3-201ENST00000493276 369 ntBASIC3.83□□□□□ -1.8
CLIP3Q96DZ5 AC009901.1-201ENST00000506703 541 ntBASIC3.83□□□□□ -1.8
CLIP3Q96DZ5 RNU2-69P-201ENST00000516061 100 ntBASIC3.83□□□□□ -1.8
CLIP3Q96DZ5 RNU6-475P-201ENST00000516073 104 ntBASIC3.83□□□□□ -1.8
CLIP3Q96DZ5 RNU6-1143P-201ENST00000516125 104 ntBASIC3.83□□□□□ -1.8
CLIP3Q96DZ5 RNU6-1332P-201ENST00000516666 104 ntBASIC3.83□□□□□ -1.8
CLIP3Q96DZ5 RNU7-143P-201ENST00000516781 65 ntBASIC3.83□□□□□ -1.8
CLIP3Q96DZ5 AP000867.2-201ENST00000532468 320 ntBASIC3.83□□□□□ -1.8
CLIP3Q96DZ5 AC074050.1-201ENST00000563247 211 ntBASIC3.83□□□□□ -1.8
CLIP3Q96DZ5 LINC02079-201ENST00000582518 294 ntTSL 2 BASIC3.83□□□□□ -1.8
CLIP3Q96DZ5 AC016727.2-201ENST00000603988 621 ntBASIC3.83□□□□□ -1.8
CLIP3Q96DZ5 U2.17-201ENST00000611454 95 ntBASIC3.83□□□□□ -1.8
CLIP3Q96DZ5 AL021879.1-201ENST00000611756 288 ntBASIC3.83□□□□□ -1.8
CLIP3Q96DZ5 AC064801.1-201ENST00000612025 407 ntBASIC3.83□□□□□ -1.8
CLIP3Q96DZ5 ASAH1-265ENST00000637922 2297 ntTSL 5 BASIC3.83□□□□□ -1.8
CLIP3Q96DZ5 POSTN-202ENST00000379743 3196 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
CLIP3Q96DZ5 LLPH-201ENST00000266604 7746 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
CLIP3Q96DZ5 APCS-201ENST00000255040 926 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
CLIP3Q96DZ5 RNU6-874P-201ENST00000362390 105 ntBASIC3.82□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 135 ms