Protein–RNA interactions for Protein: Q6UVK1

CSPG4, Chondroitin sulfate proteoglycan 4, humanhuman

Predictions only

Length 2,322 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4Q6UVK1 ZNF639-206ENST00000484866 1730 ntAPPRIS P1 TSL 2 BASIC0.34□□□□□ -2.35
CSPG4Q6UVK1 RGS13-201ENST00000391995 1505 ntAPPRIS P1 TSL 1 (best) BASIC0.34□□□□□ -2.35
CSPG4Q6UVK1 MTND4P8-201ENST00000514997 1362 ntBASIC0.34□□□□□ -2.35
CSPG4Q6UVK1 CXorf66-201ENST00000370540 1281 ntAPPRIS P1 TSL 1 (best) BASIC0.34□□□□□ -2.36
CSPG4Q6UVK1 RNU6-48P-201ENST00000384161 107 ntBASIC0.34□□□□□ -2.36
CSPG4Q6UVK1 MIR29C-201ENST00000385231 88 ntBASIC0.34□□□□□ -2.36
CSPG4Q6UVK1 AL589655.1-201ENST00000405398 482 ntBASIC0.34□□□□□ -2.36
CSPG4Q6UVK1 RSU1P2-202ENST00000437884 485 ntBASIC0.34□□□□□ -2.36
CSPG4Q6UVK1 GTF2IP13-201ENST00000438487 386 ntBASIC0.34□□□□□ -2.36
CSPG4Q6UVK1 PRPS1P1-201ENST00000445305 876 ntBASIC0.34□□□□□ -2.36
CSPG4Q6UVK1 AL049714.1-201ENST00000466686 347 ntBASIC0.34□□□□□ -2.36
CSPG4Q6UVK1 AC138853.1-201ENST00000503549 823 ntBASIC0.34□□□□□ -2.36
CSPG4Q6UVK1 LINC02494-201ENST00000509824 427 ntTSL 3 BASIC0.34□□□□□ -2.36
CSPG4Q6UVK1 AC002545.1-201ENST00000592511 181 ntBASIC0.34□□□□□ -2.36
CSPG4Q6UVK1 AC008121.1-201ENST00000603244 268 ntBASIC0.34□□□□□ -2.36
CSPG4Q6UVK1 MTRNR2L2-201ENST00000604882 87 ntBASIC0.34□□□□□ -2.36
CSPG4Q6UVK1 AL137246.1-201ENST00000607072 977 ntBASIC0.34□□□□□ -2.36
CSPG4Q6UVK1 AC007349.4-201ENST00000608114 532 ntBASIC0.34□□□□□ -2.36
CSPG4Q6UVK1 AP002826.1-201ENST00000608835 315 ntBASIC0.34□□□□□ -2.36
CSPG4Q6UVK1 AC009233.1-201ENST00000616477 371 ntBASIC0.34□□□□□ -2.36
CSPG4Q6UVK1 AC109471.3-201ENST00000625219 233 ntTSL 5 BASIC0.34□□□□□ -2.36
CSPG4Q6UVK1 RNU1-124P-201ENST00000363861 145 ntBASIC0.33□□□□□ -2.36
CSPG4Q6UVK1 RNU1-36P-201ENST00000365130 165 ntBASIC0.33□□□□□ -2.36
CSPG4Q6UVK1 SNORD82-201ENST00000365530 70 ntBASIC0.33□□□□□ -2.36
CSPG4Q6UVK1 RNU6-1226P-201ENST00000384317 107 ntBASIC0.33□□□□□ -2.36
CSPG4Q6UVK1 MRPL35P1-201ENST00000404272 572 ntBASIC0.33□□□□□ -2.36
CSPG4Q6UVK1 AL139098.1-201ENST00000407291 389 ntBASIC0.33□□□□□ -2.36
CSPG4Q6UVK1 AL357315.1-201ENST00000422930 254 ntTSL 5 BASIC0.33□□□□□ -2.36
CSPG4Q6UVK1 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC0.33□□□□□ -2.36
CSPG4Q6UVK1 snoU13.11-201ENST00000459219 104 ntBASIC0.33□□□□□ -2.36
CSPG4Q6UVK1 SNORA3.4-201ENST00000515969 96 ntBASIC0.33□□□□□ -2.36
CSPG4Q6UVK1 RNU6-1004P-201ENST00000516584 111 ntBASIC0.33□□□□□ -2.36
CSPG4Q6UVK1 AC113192.4-201ENST00000534666 547 ntTSL 4 BASIC0.33□□□□□ -2.36
CSPG4Q6UVK1 AC004812.1-201ENST00000540773 146 ntBASIC0.33□□□□□ -2.36
CSPG4Q6UVK1 AC068276.1-201ENST00000605793 379 ntBASIC0.33□□□□□ -2.36
CSPG4Q6UVK1 TMEM154-204ENST00000613578 486 ntAPPRIS ALT2 TSL 5 BASIC0.33□□□□□ -2.36
CSPG4Q6UVK1 AC091965.5-201ENST00000624785 342 ntBASIC0.33□□□□□ -2.36
CSPG4Q6UVK1 AL049641.1-201ENST00000441055 1948 ntBASIC0.33□□□□□ -2.36
CSPG4Q6UVK1 MIR95-201ENST00000385072 81 ntBASIC0.33□□□□□ -2.36
CSPG4Q6UVK1 MIR100-201ENST00000385259 80 ntBASIC0.33□□□□□ -2.36
CSPG4Q6UVK1 RNU6ATAC11P-201ENST00000408541 125 ntBASIC0.33□□□□□ -2.36
CSPG4Q6UVK1 RPL37P10-201ENST00000412884 288 ntBASIC0.33□□□□□ -2.36
CSPG4Q6UVK1 EIF4EP2-201ENST00000422816 654 ntBASIC0.33□□□□□ -2.36
CSPG4Q6UVK1 ZNF863P-201ENST00000426746 417 ntBASIC0.33□□□□□ -2.36
CSPG4Q6UVK1 MTCO1P53-201ENST00000441633 699 ntBASIC0.33□□□□□ -2.36
CSPG4Q6UVK1 KATNBL1P6-201ENST00000453433 915 ntBASIC0.33□□□□□ -2.36
CSPG4Q6UVK1 AL160287.1-201ENST00000455612 432 ntTSL 3 BASIC0.33□□□□□ -2.36
CSPG4Q6UVK1 AC069133.1-201ENST00000522857 566 ntTSL 4 BASIC0.33□□□□□ -2.36
CSPG4Q6UVK1 AC090371.2-202ENST00000582239 644 ntTSL 5 BASIC0.33□□□□□ -2.36
CSPG4Q6UVK1 AC024060.1-201ENST00000607052 494 ntBASIC0.33□□□□□ -2.36
CSPG4Q6UVK1 AC069294.1-201ENST00000608397 350 ntBASIC0.33□□□□□ -2.36
CSPG4Q6UVK1 AC005021.1-201ENST00000608730 355 ntBASIC0.33□□□□□ -2.36
CSPG4Q6UVK1 uc_338.14-201ENST00000613162 166 ntBASIC0.33□□□□□ -2.36
CSPG4Q6UVK1 ZEB2_AS1_1.1-201ENST00000621504 128 ntBASIC0.33□□□□□ -2.36
CSPG4Q6UVK1 AP003399.1-201ENST00000637534 361 ntBASIC0.33□□□□□ -2.36
CSPG4Q6UVK1 SNORA8.3-201ENST00000384679 139 ntBASIC0.32□□□□□ -2.36
CSPG4Q6UVK1 AC105271.1-202ENST00000411417 445 ntTSL 3 BASIC0.32□□□□□ -2.36
CSPG4Q6UVK1 AC002456.1-203ENST00000412669 449 ntTSL 3 BASIC0.32□□□□□ -2.36
CSPG4Q6UVK1 AC096649.2-201ENST00000416186 393 ntBASIC0.32□□□□□ -2.36
CSPG4Q6UVK1 AC023128.1-201ENST00000432431 799 ntTSL 3 BASIC0.32□□□□□ -2.36
CSPG4Q6UVK1 MIR217HG-201ENST00000446139 900 ntTSL 5 BASIC0.32□□□□□ -2.36
CSPG4Q6UVK1 AC004994.1-201ENST00000447057 313 ntTSL 3 BASIC0.32□□□□□ -2.36
CSPG4Q6UVK1 LINC02173-201ENST00000504132 521 ntTSL 2 BASIC0.32□□□□□ -2.36
CSPG4Q6UVK1 AC107463.1-202ENST00000514526 689 ntTSL 2 BASIC0.32□□□□□ -2.36
CSPG4Q6UVK1 SNORA4.4-201ENST00000515921 135 ntBASIC0.32□□□□□ -2.36
CSPG4Q6UVK1 MIR4504-201ENST00000577413 92 ntBASIC0.32□□□□□ -2.36
CSPG4Q6UVK1 RSL24D1P11-201ENST00000591045 491 ntBASIC0.32□□□□□ -2.36
CSPG4Q6UVK1 AC120349.1-201ENST00000599498 282 ntTSL 5 BASIC0.32□□□□□ -2.36
CSPG4Q6UVK1 AC008498.1-201ENST00000613012 531 ntBASIC0.32□□□□□ -2.36
CSPG4Q6UVK1 AC023490.1-201ENST00000614584 375 ntTSL 2 BASIC0.32□□□□□ -2.36
CSPG4Q6UVK1 AL590410.1-201ENST00000617925 333 ntBASIC0.32□□□□□ -2.36
CSPG4Q6UVK1 AC011718.1-201ENST00000622906 375 ntTSL 1 (best) BASIC0.32□□□□□ -2.36
CSPG4Q6UVK1 AC069228.1-201ENST00000546936 1615 ntTSL 3 BASIC0.32□□□□□ -2.36
CSPG4Q6UVK1 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC0.32□□□□□ -2.36
CSPG4Q6UVK1 RNU4-73P-201ENST00000363164 141 ntBASIC0.32□□□□□ -2.36
CSPG4Q6UVK1 RNU6-217P-201ENST00000384164 104 ntBASIC0.32□□□□□ -2.36
CSPG4Q6UVK1 Y_RNA.572-201ENST00000384757 98 ntBASIC0.32□□□□□ -2.36
CSPG4Q6UVK1 AC068533.3-201ENST00000435524 404 ntTSL 5 BASIC0.32□□□□□ -2.36
CSPG4Q6UVK1 AC020559.1-201ENST00000444229 583 ntTSL 2 BASIC0.32□□□□□ -2.36
CSPG4Q6UVK1 AC073326.1-201ENST00000451832 557 ntTSL 3 BASIC0.32□□□□□ -2.36
CSPG4Q6UVK1 AC114982.1-201ENST00000469402 321 ntBASIC0.32□□□□□ -2.36
CSPG4Q6UVK1 TOPORSLP1-202ENST00000469756 969 ntTSL 3 BASIC0.32□□□□□ -2.36
CSPG4Q6UVK1 VPS26AP1-201ENST00000483197 979 ntBASIC0.32□□□□□ -2.36
CSPG4Q6UVK1 AC113398.2-201ENST00000507630 558 ntBASIC0.32□□□□□ -2.36
CSPG4Q6UVK1 AP006587.4-201ENST00000526053 529 ntBASIC0.32□□□□□ -2.36
CSPG4Q6UVK1 AL359212.1-201ENST00000556608 614 ntBASIC0.32□□□□□ -2.36
CSPG4Q6UVK1 AC023158.1-201ENST00000561632 1025 ntBASIC0.32□□□□□ -2.36
CSPG4Q6UVK1 AL121652.1-201ENST00000608851 448 ntBASIC0.32□□□□□ -2.36
CSPG4Q6UVK1 AC009318.4-201ENST00000620496 486 ntBASIC0.32□□□□□ -2.36
CSPG4Q6UVK1 AL109837.2-201ENST00000632608 295 ntTSL 3 BASIC0.32□□□□□ -2.36
CSPG4Q6UVK1 AC008163.1-202ENST00000636004 2889 ntBASIC0.32□□□□□ -2.36
CSPG4Q6UVK1 Y_RNA.25-201ENST00000362528 102 ntBASIC0.31□□□□□ -2.36
CSPG4Q6UVK1 MIR618-201ENST00000385287 98 ntBASIC0.31□□□□□ -2.36
CSPG4Q6UVK1 RNU2-7P-201ENST00000410794 178 ntBASIC0.31□□□□□ -2.36
CSPG4Q6UVK1 AC078974.1-201ENST00000411597 223 ntBASIC0.31□□□□□ -2.36
CSPG4Q6UVK1 AC006461.1-201ENST00000412637 326 ntBASIC0.31□□□□□ -2.36
CSPG4Q6UVK1 AL606490.4-201ENST00000423117 127 ntBASIC0.31□□□□□ -2.36
CSPG4Q6UVK1 AL035410.1-201ENST00000427409 427 ntBASIC0.31□□□□□ -2.36
CSPG4Q6UVK1 MTCO3P5-201ENST00000433620 714 ntBASIC0.31□□□□□ -2.36
CSPG4Q6UVK1 USP9YP24-201ENST00000434374 697 ntBASIC0.31□□□□□ -2.36
Retrieved 100 of 98,524 protein–RNA pairs in 98.5 ms