Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 MMS22L-202ENST00000369251 3949 ntTSL 2 BASIC3.68□□□□□ -1.82
MSX2P35548 CNTN6-205ENST00000446702 4513 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
MSX2P35548 RFX7-201ENST00000559447 10426 ntAPPRIS P5 TSL 5 BASIC3.68□□□□□ -1.82
MSX2P35548 RNU6-50P-201ENST00000362356 103 ntBASIC3.68□□□□□ -1.82
MSX2P35548 RNU6-1167P-201ENST00000363227 94 ntBASIC3.68□□□□□ -1.82
MSX2P35548 RNU6-395P-201ENST00000365662 106 ntBASIC3.68□□□□□ -1.82
MSX2P35548 Y_RNA.533-201ENST00000384596 114 ntBASIC3.68□□□□□ -1.82
MSX2P35548 Y_RNA.562-201ENST00000384695 113 ntBASIC3.68□□□□□ -1.82
MSX2P35548 AL591034.2-201ENST00000402839 359 ntBASIC3.68□□□□□ -1.82
MSX2P35548 MIR1302-6-201ENST00000408466 90 ntBASIC3.68□□□□□ -1.82
MSX2P35548 RNU2-38P-201ENST00000410856 79 ntBASIC3.68□□□□□ -1.82
MSX2P35548 AL096701.2-201ENST00000416920 238 ntBASIC3.68□□□□□ -1.82
MSX2P35548 AC002075.2-201ENST00000425207 252 ntBASIC3.68□□□□□ -1.82
MSX2P35548 AC091390.3-201ENST00000426478 338 ntBASIC3.68□□□□□ -1.82
MSX2P35548 MYL8P-204ENST00000431574 518 ntBASIC3.68□□□□□ -1.82
MSX2P35548 AC006037.1-201ENST00000437967 287 ntTSL 5 BASIC3.68□□□□□ -1.82
MSX2P35548 RPS3AP46-201ENST00000448352 682 ntBASIC3.68□□□□□ -1.82
MSX2P35548 AL162151.2-201ENST00000448875 158 ntBASIC3.68□□□□□ -1.82
MSX2P35548 RPL23AP24-201ENST00000458203 385 ntBASIC3.68□□□□□ -1.82
MSX2P35548 AC084851.1-201ENST00000529105 249 ntBASIC3.68□□□□□ -1.82
MSX2P35548 AC020891.1-201ENST00000558785 174 ntTSL 3 BASIC3.68□□□□□ -1.82
MSX2P35548 AC016597.1-201ENST00000564893 528 ntTSL 4 BASIC3.68□□□□□ -1.82
MSX2P35548 ZNF192P1-203ENST00000565888 810 ntBASIC3.68□□□□□ -1.82
MSX2P35548 PWRN1-209ENST00000568019 359 ntTSL 3 BASIC3.68□□□□□ -1.82
MSX2P35548 AC090517.1-201ENST00000569307 266 ntBASIC3.68□□□□□ -1.82
MSX2P35548 MIR5701-3-201ENST00000578890 82 ntBASIC3.68□□□□□ -1.82
MSX2P35548 MIR3128-201ENST00000581957 66 ntBASIC3.68□□□□□ -1.82
MSX2P35548 MIR5701-1-201ENST00000585138 82 ntBASIC3.68□□□□□ -1.82
MSX2P35548 ZRANB2-AS2-213ENST00000591654 719 ntTSL 5 BASIC3.68□□□□□ -1.82
MSX2P35548 AC104534.1-201ENST00000594558 566 ntTSL 4 BASIC3.68□□□□□ -1.82
MSX2P35548 AL590392.1-201ENST00000604960 446 ntBASIC3.68□□□□□ -1.82
MSX2P35548 AC016747.2-202ENST00000607743 332 ntTSL 5 BASIC3.68□□□□□ -1.82
MSX2P35548 LINC00310-206ENST00000609947 892 ntTSL 5 BASIC3.68□□□□□ -1.82
MSX2P35548 MIR1244-1-201ENST00000612829 85 ntBASIC3.68□□□□□ -1.82
MSX2P35548 MIR5701-2-201ENST00000615634 82 ntBASIC3.68□□□□□ -1.82
MSX2P35548 MIR1244-3-201ENST00000635744 85 ntBASIC3.68□□□□□ -1.82
MSX2P35548 MIR1244-2-201ENST00000636449 85 ntBASIC3.68□□□□□ -1.82
MSX2P35548 MIR1244-4-202ENST00000636813 85 ntBASIC3.68□□□□□ -1.82
MSX2P35548 USP33-201ENST00000357428 4155 ntTSL 5 BASIC3.68□□□□□ -1.82
MSX2P35548 THEMIS-202ENST00000368250 4101 ntAPPRIS P3 TSL 5 BASIC3.68□□□□□ -1.82
MSX2P35548 NCAM2-201ENST00000284894 4699 ntAPPRIS ALT2 TSL 5 BASIC3.68□□□□□ -1.82
MSX2P35548 ARID2-206ENST00000457135 4356 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
MSX2P35548 LINC00648-202ENST00000555985 2885 ntTSL 2 BASIC3.67□□□□□ -1.82
MSX2P35548 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC3.67□□□□□ -1.82
MSX2P35548 OR4G2P-202ENST00000641004 1759 ntBASIC3.67□□□□□ -1.82
MSX2P35548 TAOK3-202ENST00000419821 4301 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
MSX2P35548 SNORA60-201ENST00000362396 134 ntBASIC3.67□□□□□ -1.82
MSX2P35548 Y_RNA.14-201ENST00000362415 103 ntBASIC3.67□□□□□ -1.82
MSX2P35548 Y_RNA.33-201ENST00000362591 102 ntBASIC3.67□□□□□ -1.82
MSX2P35548 Y_RNA.60-201ENST00000362831 98 ntBASIC3.67□□□□□ -1.82
MSX2P35548 Y_RNA.64-201ENST00000362845 102 ntBASIC3.67□□□□□ -1.82
MSX2P35548 RN7SKP227-201ENST00000364445 330 ntBASIC3.67□□□□□ -1.82
MSX2P35548 RNU6-1317P-201ENST00000364582 104 ntBASIC3.67□□□□□ -1.82
MSX2P35548 MIR625-201ENST00000385047 85 ntBASIC3.67□□□□□ -1.82
MSX2P35548 MIR514A1-201ENST00000385133 98 ntBASIC3.67□□□□□ -1.82
MSX2P35548 MIR301A-201ENST00000385261 86 ntBASIC3.67□□□□□ -1.82
MSX2P35548 AL592148.1-201ENST00000413568 445 ntBASIC3.67□□□□□ -1.82
MSX2P35548 TTTY8-202ENST00000426035 518 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
MSX2P35548 AC017083.1-201ENST00000428093 483 ntBASIC3.67□□□□□ -1.82
MSX2P35548 TBCAP1-201ENST00000436520 327 ntBASIC3.67□□□□□ -1.82
MSX2P35548 SIRPG-AS1-201ENST00000437384 410 ntTSL 3 BASIC3.67□□□□□ -1.82
MSX2P35548 OR2AQ1P-201ENST00000451972 200 ntBASIC3.67□□□□□ -1.82
MSX2P35548 TTTY8B-202ENST00000455570 518 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
MSX2P35548 RNU7-169P-201ENST00000459456 61 ntBASIC3.67□□□□□ -1.82
MSX2P35548 RNU6-1037P-201ENST00000459571 107 ntBASIC3.67□□□□□ -1.82
MSX2P35548 AL049874.1-201ENST00000489560 388 ntBASIC3.67□□□□□ -1.82
MSX2P35548 AC004052.1-202ENST00000505680 516 ntTSL 3 BASIC3.67□□□□□ -1.82
MSX2P35548 AC091887.1-201ENST00000514002 439 ntTSL 5 BASIC3.67□□□□□ -1.82
MSX2P35548 RNA5SP208-201ENST00000516156 78 ntBASIC3.67□□□□□ -1.82
MSX2P35548 AC109329.1-201ENST00000518744 317 ntBASIC3.67□□□□□ -1.82
MSX2P35548 HSPE1P20-201ENST00000538133 289 ntBASIC3.67□□□□□ -1.82
MSX2P35548 AC112481.1-201ENST00000549669 901 ntTSL 2 BASIC3.67□□□□□ -1.82
MSX2P35548 AC004584.2-201ENST00000570407 410 ntBASIC3.67□□□□□ -1.82
MSX2P35548 AC136624.4-201ENST00000573044 370 ntBASIC3.67□□□□□ -1.82
MSX2P35548 AC007948.1-201ENST00000581632 242 ntTSL 5 BASIC3.67□□□□□ -1.82
MSX2P35548 AC141273.2-201ENST00000618989 130 ntBASIC3.67□□□□□ -1.82
MSX2P35548 BLM-208ENST00000560509 3966 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
MSX2P35548 ESCO1-201ENST00000269214 4523 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
MSX2P35548 SCOC-203ENST00000394203 1999 ntTSL 2 BASIC3.67□□□□□ -1.82
MSX2P35548 MGA-211ENST00000570161 11859 ntAPPRIS P4 TSL 5 BASIC3.67□□□□□ -1.82
MSX2P35548 AL672296.1-201ENST00000427780 2158 ntBASIC3.66□□□□□ -1.82
MSX2P35548 OR56A5-201ENST00000340110 738 ntBASIC3.66□□□□□ -1.82
MSX2P35548 RNU6-770P-201ENST00000363929 105 ntBASIC3.66□□□□□ -1.82
MSX2P35548 RNA5SP479-201ENST00000364858 117 ntBASIC3.66□□□□□ -1.82
MSX2P35548 CLDN10-202ENST00000376855 701 ntTSL 2 BASIC3.66□□□□□ -1.82
MSX2P35548 RNU6-933P-201ENST00000384424 107 ntBASIC3.66□□□□□ -1.82
MSX2P35548 Y_RNA.526-201ENST00000384572 110 ntBASIC3.66□□□□□ -1.82
MSX2P35548 RPS29P31-201ENST00000446147 164 ntBASIC3.66□□□□□ -1.82
MSX2P35548 Z68323.1-201ENST00000450365 519 ntTSL 3 BASIC3.66□□□□□ -1.82
MSX2P35548 SUMO1P2-201ENST00000452524 304 ntBASIC3.66□□□□□ -1.82
MSX2P35548 AC132825.2-201ENST00000483901 504 ntTSL 5 BASIC3.66□□□□□ -1.82
MSX2P35548 RN7SL604P-201ENST00000492589 296 ntBASIC3.66□□□□□ -1.82
MSX2P35548 LINC02017-201ENST00000496829 474 ntTSL 3 BASIC3.66□□□□□ -1.82
MSX2P35548 AC093840.1-201ENST00000511599 336 ntBASIC3.66□□□□□ -1.82
MSX2P35548 RNU6-1023P-201ENST00000516137 106 ntBASIC3.66□□□□□ -1.82
MSX2P35548 RNU6-143P-201ENST00000516942 93 ntBASIC3.66□□□□□ -1.82
MSX2P35548 AF233439.1-201ENST00000526235 401 ntTSL 3 BASIC3.66□□□□□ -1.82
MSX2P35548 OR56A5-202ENST00000532411 942 ntAPPRIS P1 BASIC3.66□□□□□ -1.82
MSX2P35548 LINC02165-201ENST00000563061 443 ntTSL 3 BASIC3.66□□□□□ -1.82
MSX2P35548 AC074050.1-201ENST00000563247 211 ntBASIC3.66□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 102.6 ms