Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 CCDC7-207ENST00000535327 700 ntAPPRIS ALT2 TSL 1 (best) BASIC1.16□□□□□ -2.22
HLA-DMBP28068 AC008083.1-201ENST00000547748 663 ntTSL 2 BASIC1.16□□□□□ -2.22
HLA-DMBP28068 AC026765.1-201ENST00000547876 435 ntTSL 3 BASIC1.16□□□□□ -2.22
HLA-DMBP28068 IMMP1LP2-201ENST00000552954 492 ntBASIC1.16□□□□□ -2.22
HLA-DMBP28068 AC012146.1-204ENST00000570712 426 ntTSL 3 BASIC1.16□□□□□ -2.22
HLA-DMBP28068 AC015813.2-201ENST00000578794 711 ntAPPRIS P1 TSL 3 BASIC1.16□□□□□ -2.22
HLA-DMBP28068 MIR4255-201ENST00000579351 72 ntBASIC1.16□□□□□ -2.22
HLA-DMBP28068 MTATP6P2-201ENST00000603319 678 ntBASIC1.16□□□□□ -2.22
HLA-DMBP28068 BX248123.2-201ENST00000606318 124 ntBASIC1.16□□□□□ -2.22
HLA-DMBP28068 SCOC-AS1-203ENST00000609616 405 ntTSL 3 BASIC1.16□□□□□ -2.22
HLA-DMBP28068 uc_338.5-201ENST00000611839 155 ntBASIC1.16□□□□□ -2.22
HLA-DMBP28068 AL158163.2-201ENST00000619110 700 ntBASIC1.16□□□□□ -2.22
HLA-DMBP28068 AC092192.1-201ENST00000633154 1018 ntBASIC1.16□□□□□ -2.22
HLA-DMBP28068 GABRA2-209ENST00000510861 3411 ntAPPRIS P1 TSL 5 BASIC1.16□□□□□ -2.22
HLA-DMBP28068 LINC02510-201ENST00000509798 1576 ntTSL 1 (best) BASIC1.16□□□□□ -2.22
HLA-DMBP28068 AC103993.1-201ENST00000521500 1584 ntTSL 5 BASIC1.16□□□□□ -2.22
HLA-DMBP28068 MTND5P10-201ENST00000603719 1809 ntBASIC1.15□□□□□ -2.22
HLA-DMBP28068 RNU6-224P-201ENST00000384055 107 ntBASIC1.15□□□□□ -2.23
HLA-DMBP28068 RNU6-1032P-201ENST00000384100 107 ntBASIC1.15□□□□□ -2.23
HLA-DMBP28068 MIR1284-201ENST00000408337 120 ntBASIC1.15□□□□□ -2.23
HLA-DMBP28068 Y_RNA.595-201ENST00000410403 105 ntBASIC1.15□□□□□ -2.23
HLA-DMBP28068 AP000432.1-201ENST00000416641 516 ntTSL 3 BASIC1.15□□□□□ -2.23
HLA-DMBP28068 AC008267.5-201ENST00000424928 265 ntBASIC1.15□□□□□ -2.23
HLA-DMBP28068 UBE2V1P4-201ENST00000425374 344 ntBASIC1.15□□□□□ -2.23
HLA-DMBP28068 AL592045.1-201ENST00000429867 352 ntBASIC1.15□□□□□ -2.23
HLA-DMBP28068 AL139397.1-201ENST00000430456 644 ntTSL 2 BASIC1.15□□□□□ -2.23
HLA-DMBP28068 ZNF736P11Y-201ENST00000442535 1213 ntBASIC1.15□□□□□ -2.23
HLA-DMBP28068 EEF1E1P1-201ENST00000446998 430 ntBASIC1.15□□□□□ -2.23
HLA-DMBP28068 MTCO1P27-201ENST00000448269 226 ntBASIC1.15□□□□□ -2.23
HLA-DMBP28068 GJE1-201ENST00000450456 916 ntAPPRIS P1 TSL 5 BASIC1.15□□□□□ -2.23
HLA-DMBP28068 AL359915.2-203ENST00000457043 540 ntTSL 3 BASIC1.15□□□□□ -2.23
HLA-DMBP28068 CHRM3-AS2-203ENST00000458325 895 ntTSL 2 BASIC1.15□□□□□ -2.23
HLA-DMBP28068 LAMTOR3P2-201ENST00000504479 232 ntBASIC1.15□□□□□ -2.23
HLA-DMBP28068 AC008837.2-201ENST00000513076 418 ntBASIC1.15□□□□□ -2.23
HLA-DMBP28068 AC108729.3-201ENST00000513484 108 ntBASIC1.15□□□□□ -2.23
HLA-DMBP28068 AC093772.1-201ENST00000513519 506 ntTSL 2 BASIC1.15□□□□□ -2.23
HLA-DMBP28068 RNU6-64P-201ENST00000517119 105 ntBASIC1.15□□□□□ -2.23
HLA-DMBP28068 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC1.15□□□□□ -2.23
HLA-DMBP28068 AP006587.4-201ENST00000526053 529 ntBASIC1.15□□□□□ -2.23
HLA-DMBP28068 AC123905.1-201ENST00000552098 541 ntTSL 4 BASIC1.15□□□□□ -2.23
HLA-DMBP28068 AL356432.3-201ENST00000568952 465 ntBASIC1.15□□□□□ -2.23
HLA-DMBP28068 MIR3198-2-201ENST00000577868 80 ntBASIC1.15□□□□□ -2.23
HLA-DMBP28068 AP001004.1-201ENST00000582468 324 ntBASIC1.15□□□□□ -2.23
HLA-DMBP28068 AC023043.2-201ENST00000589678 1026 ntBASIC1.15□□□□□ -2.23
HLA-DMBP28068 VN1R80P-201ENST00000597126 338 ntBASIC1.15□□□□□ -2.23
HLA-DMBP28068 RPL30P11-203ENST00000598995 310 ntBASIC1.15□□□□□ -2.23
HLA-DMBP28068 BNIP3P26-201ENST00000600827 554 ntBASIC1.15□□□□□ -2.23
HLA-DMBP28068 AL133445.2-201ENST00000611191 527 ntBASIC1.15□□□□□ -2.23
HLA-DMBP28068 AC112204.3-201ENST00000623822 332 ntBASIC1.15□□□□□ -2.23
HLA-DMBP28068 RMDN2-203ENST00000402091 1973 ntTSL 2 BASIC1.15□□□□□ -2.23
HLA-DMBP28068 CYSLTR1-201ENST00000373304 2576 ntAPPRIS P1 TSL 1 (best) BASIC1.14□□□□□ -2.23
HLA-DMBP28068 RNU6-661P-201ENST00000362409 107 ntBASIC1.14□□□□□ -2.23
HLA-DMBP28068 RNU6-898P-201ENST00000365627 104 ntBASIC1.14□□□□□ -2.23
HLA-DMBP28068 TXNDC8-203ENST00000374511 472 ntAPPRIS ALT2 TSL 5 BASIC1.14□□□□□ -2.23
HLA-DMBP28068 U8.10-201ENST00000384260 133 ntBASIC1.14□□□□□ -2.23
HLA-DMBP28068 SNORA67.6-201ENST00000391093 99 ntBASIC1.14□□□□□ -2.23
HLA-DMBP28068 FGF7P8-201ENST00000402994 292 ntBASIC1.14□□□□□ -2.23
HLA-DMBP28068 RNU4-62P-201ENST00000410125 130 ntBASIC1.14□□□□□ -2.23
HLA-DMBP28068 AL391863.2-201ENST00000411838 681 ntTSL 2 BASIC1.14□□□□□ -2.23
HLA-DMBP28068 RPL23AP36-201ENST00000413895 458 ntBASIC1.14□□□□□ -2.23
HLA-DMBP28068 AL645937.4-201ENST00000419702 389 ntTSL 2 BASIC1.14□□□□□ -2.23
HLA-DMBP28068 AL589986.2-201ENST00000429352 397 ntTSL 2 BASIC1.14□□□□□ -2.23
HLA-DMBP28068 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC1.14□□□□□ -2.23
HLA-DMBP28068 AC006333.1-202ENST00000440504 555 ntTSL 4 BASIC1.14□□□□□ -2.23
HLA-DMBP28068 PAXBP1P1-201ENST00000449315 447 ntBASIC1.14□□□□□ -2.23
HLA-DMBP28068 ZNF886P-201ENST00000450781 723 ntBASIC1.14□□□□□ -2.23
HLA-DMBP28068 AL354824.2-201ENST00000458004 446 ntTSL 3 BASIC1.14□□□□□ -2.23
HLA-DMBP28068 RPL39P36-201ENST00000490784 156 ntBASIC1.14□□□□□ -2.23
HLA-DMBP28068 AC093752.1-206ENST00000511823 336 ntBASIC1.14□□□□□ -2.23
HLA-DMBP28068 AC092436.2-201ENST00000515188 411 ntTSL 2 BASIC1.14□□□□□ -2.23
HLA-DMBP28068 RNU6-586P-201ENST00000517265 104 ntBASIC1.14□□□□□ -2.23
HLA-DMBP28068 AC018541.1-202ENST00000518687 584 ntTSL 4 BASIC1.14□□□□□ -2.23
HLA-DMBP28068 AC090023.1-201ENST00000545750 443 ntTSL 3 BASIC1.14□□□□□ -2.23
HLA-DMBP28068 RPS3AP4-201ENST00000555161 764 ntBASIC1.14□□□□□ -2.23
HLA-DMBP28068 MIR4303-201ENST00000581299 66 ntBASIC1.14□□□□□ -2.23
HLA-DMBP28068 ZNF573-209ENST00000585724 453 ntTSL 5 BASIC1.14□□□□□ -2.23
HLA-DMBP28068 VN1R83P-201ENST00000595685 445 ntBASIC1.14□□□□□ -2.23
HLA-DMBP28068 AC016727.1-205ENST00000605437 569 ntBASIC1.14□□□□□ -2.23
HLA-DMBP28068 AC018638.7-201ENST00000605836 1114 ntBASIC1.14□□□□□ -2.23
HLA-DMBP28068 AC098614.4-201ENST00000607601 462 ntBASIC1.14□□□□□ -2.23
HLA-DMBP28068 AC096772.1-201ENST00000609146 564 ntBASIC1.14□□□□□ -2.23
HLA-DMBP28068 AC124016.2-201ENST00000610058 665 ntBASIC1.14□□□□□ -2.23
HLA-DMBP28068 LINC01206-214ENST00000610910 456 ntTSL 5 BASIC1.14□□□□□ -2.23
HLA-DMBP28068 AC090970.3-201ENST00000612566 866 ntBASIC1.14□□□□□ -2.23
HLA-DMBP28068 AC091304.6-201ENST00000619761 202 ntBASIC1.14□□□□□ -2.23
HLA-DMBP28068 AC007527.2-201ENST00000621825 546 ntTSL 5 BASIC1.14□□□□□ -2.23
HLA-DMBP28068 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC1.13□□□□□ -2.23
HLA-DMBP28068 CENPQ-201ENST00000335783 1733 ntAPPRIS P1 TSL 1 (best) BASIC1.13□□□□□ -2.23
HLA-DMBP28068 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC1.13□□□□□ -2.23
HLA-DMBP28068 RNU6-611P-201ENST00000384276 104 ntBASIC1.13□□□□□ -2.23
HLA-DMBP28068 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC1.13□□□□□ -2.23
HLA-DMBP28068 CXADR-203ENST00000400165 603 ntTSL 1 (best) BASIC1.13□□□□□ -2.23
HLA-DMBP28068 MIR1262-201ENST00000408276 93 ntBASIC1.13□□□□□ -2.23
HLA-DMBP28068 MTCO1P17-201ENST00000411522 491 ntBASIC1.13□□□□□ -2.23
HLA-DMBP28068 AL359704.1-201ENST00000411586 781 ntBASIC1.13□□□□□ -2.23
HLA-DMBP28068 AL445669.1-201ENST00000426743 755 ntBASIC1.13□□□□□ -2.23
HLA-DMBP28068 AC244035.3-201ENST00000428399 271 ntTSL 2 BASIC1.13□□□□□ -2.23
HLA-DMBP28068 CHODL-AS1-201ENST00000447175 1117 ntTSL 2 BASIC1.13□□□□□ -2.23
HLA-DMBP28068 AC013269.3-201ENST00000450486 444 ntTSL 3 BASIC1.13□□□□□ -2.23
HLA-DMBP28068 AL157400.4-201ENST00000455699 667 ntTSL 1 (best) BASIC1.13□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 109.7 ms