Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 AC022809.1-201ENST00000579247 428 ntTSL 3 BASIC2.87□□□□□ -1.95
BDNFP23560 AP005062.1-201ENST00000581502 607 ntTSL 3 BASIC2.87□□□□□ -1.95
BDNFP23560 AC023394.2-201ENST00000581987 792 ntTSL 5 BASIC2.87□□□□□ -1.95
BDNFP23560 MIR4672-201ENST00000583126 81 ntBASIC2.87□□□□□ -1.95
BDNFP23560 ZNF788-206ENST00000596883 692 ntTSL 3 BASIC2.87□□□□□ -1.95
BDNFP23560 AC005046.1-201ENST00000608515 625 ntBASIC2.87□□□□□ -1.95
BDNFP23560 uc_338.15-201ENST00000615470 191 ntBASIC2.87□□□□□ -1.95
BDNFP23560 AC010378.1-201ENST00000619270 362 ntBASIC2.87□□□□□ -1.95
BDNFP23560 TMPRSS11A-201ENST00000334830 3054 ntAPPRIS P3 TSL 2 BASIC2.87□□□□□ -1.95
BDNFP23560 ARHGAP5-202ENST00000345122 9604 ntAPPRIS P3 TSL 5 BASIC2.87□□□□□ -1.95
BDNFP23560 CYSLTR1-203ENST00000614798 2681 ntAPPRIS P1 TSL 1 (best) BASIC2.86□□□□□ -1.95
BDNFP23560 TLK1-206ENST00000434911 2156 ntTSL 2 BASIC2.86□□□□□ -1.95
BDNFP23560 RNU6-529P-201ENST00000363383 104 ntBASIC2.86□□□□□ -1.95
BDNFP23560 Y_RNA.500-201ENST00000384466 111 ntBASIC2.86□□□□□ -1.95
BDNFP23560 CASP3-203ENST00000393588 677 ntTSL 4 BASIC2.86□□□□□ -1.95
BDNFP23560 RNA5SP390-201ENST00000410191 113 ntBASIC2.86□□□□□ -1.95
BDNFP23560 AP001136.1-201ENST00000425058 635 ntTSL 2 BASIC2.86□□□□□ -1.95
BDNFP23560 ISCA1P6-201ENST00000427740 390 ntBASIC2.86□□□□□ -1.95
BDNFP23560 LINC02336-201ENST00000434117 330 ntTSL 3 BASIC2.86□□□□□ -1.95
BDNFP23560 AC091133.1-201ENST00000435491 483 ntTSL 3 BASIC2.86□□□□□ -1.95
BDNFP23560 AC069540.2-201ENST00000441776 351 ntTSL 3 BASIC2.86□□□□□ -1.95
BDNFP23560 AL078581.2-201ENST00000446392 378 ntTSL 3 BASIC2.86□□□□□ -1.95
BDNFP23560 AL365295.1-201ENST00000454942 514 ntTSL 5 BASIC2.86□□□□□ -1.95
BDNFP23560 SNRPGP9-201ENST00000456025 225 ntBASIC2.86□□□□□ -1.95
BDNFP23560 MEF2C-AS1-208ENST00000512585 741 ntTSL 5 BASIC2.86□□□□□ -1.95
BDNFP23560 AC063919.1-201ENST00000514281 254 ntTSL 3 BASIC2.86□□□□□ -1.95
BDNFP23560 AC105999.1-201ENST00000518722 473 ntTSL 3 BASIC2.86□□□□□ -1.95
BDNFP23560 AC113145.1-201ENST00000522408 412 ntTSL 5 BASIC2.86□□□□□ -1.95
BDNFP23560 AC124657.1-201ENST00000527819 429 ntTSL 3 BASIC2.86□□□□□ -1.95
BDNFP23560 HOMER1-205ENST00000535690 642 ntTSL 1 (best) BASIC2.86□□□□□ -1.95
BDNFP23560 MTCO3P13-201ENST00000577757 781 ntBASIC2.86□□□□□ -1.95
BDNFP23560 AC002115.1-201ENST00000589603 568 ntTSL 4 BASIC2.86□□□□□ -1.95
BDNFP23560 AL670379.2-201ENST00000604983 252 ntBASIC2.86□□□□□ -1.95
BDNFP23560 DAOA-AS1_2.1-201ENST00000614829 187 ntBASIC2.86□□□□□ -1.95
BDNFP23560 AC026585.1-201ENST00000619582 524 ntBASIC2.86□□□□□ -1.95
BDNFP23560 RNU6-859P-201ENST00000362728 107 ntBASIC2.85□□□□□ -1.95
BDNFP23560 SNORA3A-201ENST00000364113 130 ntBASIC2.85□□□□□ -1.95
BDNFP23560 RNU6-108P-201ENST00000365558 107 ntBASIC2.85□□□□□ -1.95
BDNFP23560 RNU1-148P-201ENST00000384472 162 ntBASIC2.85□□□□□ -1.95
BDNFP23560 MIR196B-201ENST00000384852 84 ntBASIC2.85□□□□□ -1.95
BDNFP23560 CD3D-202ENST00000392884 476 ntTSL 2 BASIC2.85□□□□□ -1.95
BDNFP23560 C1DP2-201ENST00000418167 426 ntBASIC2.85□□□□□ -1.95
BDNFP23560 AC092447.3-201ENST00000426027 686 ntBASIC2.85□□□□□ -1.95
BDNFP23560 AC092839.1-201ENST00000433475 536 ntTSL 4 BASIC2.85□□□□□ -1.95
BDNFP23560 MTATP6P16-201ENST00000434543 526 ntBASIC2.85□□□□□ -1.95
BDNFP23560 AC009961.2-201ENST00000435771 251 ntBASIC2.85□□□□□ -1.95
BDNFP23560 AP000936.2-201ENST00000447151 681 ntBASIC2.85□□□□□ -1.95
BDNFP23560 snoU109.2-201ENST00000459316 135 ntBASIC2.85□□□□□ -1.95
BDNFP23560 AC090515.1-201ENST00000465295 476 ntBASIC2.85□□□□□ -1.95
BDNFP23560 RBBP4P6-201ENST00000508098 202 ntBASIC2.85□□□□□ -1.95
BDNFP23560 AC023866.1-201ENST00000518064 579 ntTSL 4 BASIC2.85□□□□□ -1.95
BDNFP23560 AC090572.1-201ENST00000519251 160 ntBASIC2.85□□□□□ -1.95
BDNFP23560 AC087664.2-201ENST00000522898 551 ntTSL 4 BASIC2.85□□□□□ -1.95
BDNFP23560 AC087463.2-201ENST00000565943 472 ntTSL 3 BASIC2.85□□□□□ -1.95
BDNFP23560 RPS3AP23-202ENST00000574601 686 ntBASIC2.85□□□□□ -1.95
BDNFP23560 MIR3162-201ENST00000581818 82 ntBASIC2.85□□□□□ -1.95
BDNFP23560 RPL30P11-203ENST00000598995 310 ntBASIC2.85□□□□□ -1.95
BDNFP23560 Z99289.3-201ENST00000605586 594 ntBASIC2.85□□□□□ -1.95
BDNFP23560 MIR98-201ENST00000606724 119 ntBASIC2.85□□□□□ -1.95
BDNFP23560 LINC01684-201ENST00000415182 2176 ntTSL 1 (best) BASIC2.85□□□□□ -1.95
BDNFP23560 SLC6A15-202ENST00000309283 3108 ntTSL 5 BASIC2.85□□□□□ -1.95
BDNFP23560 ZMYM2-203ENST00000382874 10139 ntAPPRIS P1 TSL 1 (best) BASIC2.85□□□□□ -1.95
BDNFP23560 ZNF66-201ENST00000344519 1745 ntAPPRIS P1 TSL 3 BASIC2.85□□□□□ -1.95
BDNFP23560 RNF219-AS1-214ENST00000607862 6001 ntTSL 1 (best) BASIC2.84□□□□□ -1.95
BDNFP23560 RNU4-21P-201ENST00000362802 126 ntBASIC2.84□□□□□ -1.95
BDNFP23560 SNORD3E-201ENST00000362899 217 ntBASIC2.84□□□□□ -1.95
BDNFP23560 RNU6-1287P-201ENST00000362914 107 ntBASIC2.84□□□□□ -1.95
BDNFP23560 SNORD116-20-201ENST00000384529 92 ntBASIC2.84□□□□□ -1.95
BDNFP23560 RNU6-1060P-201ENST00000384664 107 ntBASIC2.84□□□□□ -1.95
BDNFP23560 MIR578-201ENST00000384828 96 ntBASIC2.84□□□□□ -1.95
BDNFP23560 SNORD23.1-201ENST00000408212 104 ntBASIC2.84□□□□□ -1.95
BDNFP23560 RPL21P90-201ENST00000415692 466 ntBASIC2.84□□□□□ -1.95
BDNFP23560 LINC01351-201ENST00000424735 526 ntTSL 2 BASIC2.84□□□□□ -1.95
BDNFP23560 LINC00844-201ENST00000432535 477 ntTSL 2 BASIC2.84□□□□□ -1.95
BDNFP23560 AL158210.1-201ENST00000448835 500 ntTSL 3 BASIC2.84□□□□□ -1.95
BDNFP23560 AC068781.1-201ENST00000488231 618 ntBASIC2.84□□□□□ -1.95
BDNFP23560 LINC02101-201ENST00000505861 725 ntTSL 4 BASIC2.84□□□□□ -1.95
BDNFP23560 AC079140.5-201ENST00000507882 310 ntBASIC2.84□□□□□ -1.95
BDNFP23560 AL136537.1-201ENST00000508199 538 ntTSL 3 BASIC2.84□□□□□ -1.95
BDNFP23560 AC104806.1-201ENST00000508720 308 ntBASIC2.84□□□□□ -1.95
BDNFP23560 AC008700.1-202ENST00000513657 468 ntTSL 5 BASIC2.84□□□□□ -1.95
BDNFP23560 SNORA9.3-201ENST00000516383 129 ntBASIC2.84□□□□□ -1.95
BDNFP23560 AC090796.1-201ENST00000520370 567 ntTSL 4 BASIC2.84□□□□□ -1.95
BDNFP23560 AL136038.2-201ENST00000553983 283 ntTSL 3 BASIC2.84□□□□□ -1.95
BDNFP23560 AL512791.1-201ENST00000555853 300 ntTSL 3 BASIC2.84□□□□□ -1.95
BDNFP23560 AC025678.1-201ENST00000567861 338 ntBASIC2.84□□□□□ -1.95
BDNFP23560 AL121992.2-201ENST00000606262 256 ntBASIC2.84□□□□□ -1.95
BDNFP23560 AC007792.1-201ENST00000623023 402 ntBASIC2.84□□□□□ -1.95
BDNFP23560 AL160287.1-202ENST00000638113 454 ntTSL 5 BASIC2.84□□□□□ -1.95
BDNFP23560 ZNF451-208ENST00000491832 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC2.84□□□□□ -1.96
BDNFP23560 AL136360.1-201ENST00000503377 1900 ntBASIC2.83□□□□□ -1.96
BDNFP23560 DDIAS-201ENST00000329143 3367 ntAPPRIS P2 TSL 1 (best) BASIC2.83□□□□□ -1.96
BDNFP23560 RNU6-942P-201ENST00000363002 107 ntBASIC2.83□□□□□ -1.96
BDNFP23560 TRAV41-201ENST00000390468 336 ntAPPRIS P1 BASIC2.83□□□□□ -1.96
BDNFP23560 SNORA26.8-201ENST00000391306 124 ntBASIC2.83□□□□□ -1.96
BDNFP23560 AC093382.1-201ENST00000413311 379 ntTSL 5 BASIC2.83□□□□□ -1.96
BDNFP23560 OR6C66P-201ENST00000414917 930 ntBASIC2.83□□□□□ -1.96
BDNFP23560 AC013401.1-202ENST00000422017 626 ntTSL 2 BASIC2.83□□□□□ -1.96
BDNFP23560 AC093423.2-201ENST00000429074 437 ntTSL 3 BASIC2.83□□□□□ -1.96
BDNFP23560 MTCO3P5-201ENST00000433620 714 ntBASIC2.83□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 115 ms