Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 CALM2P2-201ENST00000428512 440 ntBASIC2.22□□□□□ -2.05
SDC1P18827 PCDH9-AS1-201ENST00000430861 532 ntTSL 2 BASIC2.22□□□□□ -2.05
SDC1P18827 MTCO3P5-201ENST00000433620 714 ntBASIC2.22□□□□□ -2.05
SDC1P18827 RPS15AP28-201ENST00000435088 386 ntBASIC2.22□□□□□ -2.05
SDC1P18827 AC093083.1-201ENST00000438633 347 ntTSL 3 BASIC2.22□□□□□ -2.05
SDC1P18827 AC099566.1-201ENST00000442558 479 ntTSL 3 BASIC2.22□□□□□ -2.05
SDC1P18827 MTND2P22-201ENST00000444325 1033 ntBASIC2.22□□□□□ -2.05
SDC1P18827 Z83846.1-201ENST00000446798 265 ntBASIC2.22□□□□□ -2.05
SDC1P18827 LINC00571-203ENST00000454060 525 ntTSL 3 BASIC2.22□□□□□ -2.05
SDC1P18827 C1DP4-201ENST00000455429 424 ntBASIC2.22□□□□□ -2.05
SDC1P18827 AC004930.1-201ENST00000470677 254 ntTSL 2 BASIC2.22□□□□□ -2.05
SDC1P18827 AC023194.1-201ENST00000493084 308 ntBASIC2.22□□□□□ -2.05
SDC1P18827 EIF4EP3-201ENST00000498782 656 ntBASIC2.22□□□□□ -2.05
SDC1P18827 GZMAP1-201ENST00000503054 631 ntBASIC2.22□□□□□ -2.05
SDC1P18827 MTND4P2-201ENST00000507767 1203 ntBASIC2.22□□□□□ -2.05
SDC1P18827 AC117522.2-201ENST00000510049 657 ntBASIC2.22□□□□□ -2.05
SDC1P18827 AC079140.3-201ENST00000511111 550 ntBASIC2.22□□□□□ -2.05
SDC1P18827 MTCO2P4-201ENST00000517968 247 ntBASIC2.22□□□□□ -2.05
SDC1P18827 RPL7P20-201ENST00000520308 745 ntBASIC2.22□□□□□ -2.05
SDC1P18827 AC022039.1-201ENST00000527110 488 ntTSL 2 BASIC2.22□□□□□ -2.05
SDC1P18827 COX6CP5-201ENST00000527162 228 ntBASIC2.22□□□□□ -2.05
SDC1P18827 AC021269.2-201ENST00000532318 330 ntBASIC2.22□□□□□ -2.05
SDC1P18827 AC009135.1-201ENST00000549303 776 ntTSL 2 BASIC2.22□□□□□ -2.05
SDC1P18827 AC090049.1-201ENST00000551075 1011 ntTSL 3 BASIC2.22□□□□□ -2.05
SDC1P18827 LINC00933-203ENST00000559812 219 ntBASIC2.22□□□□□ -2.05
SDC1P18827 AC027176.1-201ENST00000560204 514 ntBASIC2.22□□□□□ -2.05
SDC1P18827 AC025678.1-201ENST00000567861 338 ntBASIC2.22□□□□□ -2.05
SDC1P18827 PIGPP4-201ENST00000584447 307 ntBASIC2.22□□□□□ -2.05
SDC1P18827 MIR548AC-201ENST00000585049 88 ntBASIC2.22□□□□□ -2.05
SDC1P18827 AC005332.10-201ENST00000612725 619 ntBASIC2.22□□□□□ -2.05
SDC1P18827 GPR171-203ENST00000617554 960 ntAPPRIS P1 BASIC2.22□□□□□ -2.05
SDC1P18827 HIKESHI-208ENST00000618164 499 ntTSL 5 BASIC2.22□□□□□ -2.05
SDC1P18827 AC072046.2-201ENST00000618366 268 ntBASIC2.22□□□□□ -2.05
SDC1P18827 AL353651.2-201ENST00000635706 559 ntTSL 5 BASIC2.22□□□□□ -2.05
SDC1P18827 VPS54-202ENST00000354504 3594 ntTSL 1 (best) BASIC2.21□□□□□ -2.06
SDC1P18827 RGPD1-204ENST00000559485 5247 ntAPPRIS P2 TSL 1 (best) BASIC2.21□□□□□ -2.06
SDC1P18827 OR5H15-201ENST00000383696 930 ntBASIC2.21□□□□□ -2.06
SDC1P18827 RNU6-456P-201ENST00000384493 107 ntBASIC2.21□□□□□ -2.06
SDC1P18827 SNORA80E-201ENST00000384744 137 ntBASIC2.21□□□□□ -2.06
SDC1P18827 MIR454-201ENST00000390180 115 ntBASIC2.21□□□□□ -2.06
SDC1P18827 BCL2L15-203ENST00000393320 276 ntTSL 1 (best) BASIC2.21□□□□□ -2.06
SDC1P18827 Y_RNA.623-201ENST00000411128 95 ntBASIC2.21□□□□□ -2.06
SDC1P18827 RNU6-387P-201ENST00000411331 105 ntBASIC2.21□□□□□ -2.06
SDC1P18827 RNA5SP111-201ENST00000411386 101 ntBASIC2.21□□□□□ -2.06
SDC1P18827 AF274854.1-201ENST00000413236 615 ntBASIC2.21□□□□□ -2.06
SDC1P18827 CDK8P2-201ENST00000415020 547 ntBASIC2.21□□□□□ -2.06
SDC1P18827 AC016831.2-201ENST00000417179 352 ntBASIC2.21□□□□□ -2.06
SDC1P18827 AC133106.1-201ENST00000419029 397 ntTSL 3 BASIC2.21□□□□□ -2.06
SDC1P18827 MTCYBP5-201ENST00000423752 1135 ntBASIC2.21□□□□□ -2.06
SDC1P18827 PTGES3P4-201ENST00000426243 356 ntBASIC2.21□□□□□ -2.06
SDC1P18827 MTCO2P11-201ENST00000431069 680 ntBASIC2.21□□□□□ -2.06
SDC1P18827 LINC00844-201ENST00000432535 477 ntTSL 2 BASIC2.21□□□□□ -2.06
SDC1P18827 AC000111.3-201ENST00000433478 193 ntBASIC2.21□□□□□ -2.06
SDC1P18827 AC004383.1-201ENST00000438135 289 ntBASIC2.21□□□□□ -2.06
SDC1P18827 AL360271.2-201ENST00000447710 161 ntBASIC2.21□□□□□ -2.06
SDC1P18827 CSN1S2AP-201ENST00000451783 779 ntTSL 1 (best) BASIC2.21□□□□□ -2.06
SDC1P18827 BTF3P15-201ENST00000455606 336 ntBASIC2.21□□□□□ -2.06
SDC1P18827 AL162395.1-201ENST00000457882 422 ntBASIC2.21□□□□□ -2.06
SDC1P18827 TPT1P7-201ENST00000458300 517 ntBASIC2.21□□□□□ -2.06
SDC1P18827 AC116655.1-201ENST00000508324 901 ntBASIC2.21□□□□□ -2.06
SDC1P18827 AC104806.1-201ENST00000508720 308 ntBASIC2.21□□□□□ -2.06
SDC1P18827 AC005920.2-201ENST00000509833 332 ntTSL 3 BASIC2.21□□□□□ -2.06
SDC1P18827 LNX1-AS1-203ENST00000511989 488 ntTSL 2 BASIC2.21□□□□□ -2.06
SDC1P18827 AC108727.1-201ENST00000513802 393 ntTSL 2 BASIC2.21□□□□□ -2.06
SDC1P18827 BTF3P12-201ENST00000519620 469 ntBASIC2.21□□□□□ -2.06
SDC1P18827 IGHVIII-5-1-201ENST00000523059 99 ntBASIC2.21□□□□□ -2.06
SDC1P18827 AC022695.3-201ENST00000523385 478 ntTSL 3 BASIC2.21□□□□□ -2.06
SDC1P18827 AC025871.1-201ENST00000523935 443 ntTSL 2 BASIC2.21□□□□□ -2.06
SDC1P18827 RANP3-201ENST00000530970 276 ntBASIC2.21□□□□□ -2.06
SDC1P18827 AC044798.1-201ENST00000565146 418 ntTSL 5 BASIC2.21□□□□□ -2.06
SDC1P18827 AC234778.2-201ENST00000566241 354 ntBASIC2.21□□□□□ -2.06
SDC1P18827 AC105137.2-201ENST00000569073 466 ntBASIC2.21□□□□□ -2.06
SDC1P18827 BX546450.2-201ENST00000602419 435 ntTSL 5 BASIC2.21□□□□□ -2.06
SDC1P18827 AC008121.1-201ENST00000603244 268 ntBASIC2.21□□□□□ -2.06
SDC1P18827 AL670379.4-201ENST00000605279 254 ntBASIC2.21□□□□□ -2.06
SDC1P18827 AC046143.2-201ENST00000609789 160 ntBASIC2.21□□□□□ -2.06
SDC1P18827 AC091834.1-201ENST00000614543 472 ntBASIC2.21□□□□□ -2.06
SDC1P18827 AP001486.3-201ENST00000615334 372 ntBASIC2.21□□□□□ -2.06
SDC1P18827 AC026523.1-201ENST00000617221 490 ntTSL 5 BASIC2.21□□□□□ -2.06
SDC1P18827 AL161782.1-201ENST00000622930 586 ntTSL 3 BASIC2.21□□□□□ -2.06
SDC1P18827 AC011155.2-201ENST00000623202 216 ntBASIC2.21□□□□□ -2.06
SDC1P18827 AGL-204ENST00000370161 6923 ntTSL 5 BASIC2.2□□□□□ -2.06
SDC1P18827 AC004944.1-201ENST00000517807 3059 ntBASIC2.2□□□□□ -2.06
SDC1P18827 CEP44-203ENST00000426172 3037 ntTSL 5 BASIC2.2□□□□□ -2.06
SDC1P18827 MIR412-201ENST00000362142 91 ntBASIC2.2□□□□□ -2.06
SDC1P18827 SNORA5B-201ENST00000363786 132 ntBASIC2.2□□□□□ -2.06
SDC1P18827 RNU6-1083P-201ENST00000384022 107 ntBASIC2.2□□□□□ -2.06
SDC1P18827 RNU6-19P-201ENST00000384718 107 ntBASIC2.2□□□□□ -2.06
SDC1P18827 FGFR1OP2P1-201ENST00000395943 500 ntBASIC2.2□□□□□ -2.06
SDC1P18827 DEFB108C-201ENST00000400154 252 ntBASIC2.2□□□□□ -2.06
SDC1P18827 RPS4XP7-201ENST00000406274 780 ntBASIC2.2□□□□□ -2.06
SDC1P18827 AC009963.1-201ENST00000417265 157 ntBASIC2.2□□□□□ -2.06
SDC1P18827 AC009158.1-206ENST00000417476 454 ntTSL 3 BASIC2.2□□□□□ -2.06
SDC1P18827 AL353612.1-201ENST00000428769 465 ntTSL 3 BASIC2.2□□□□□ -2.06
SDC1P18827 AC023590.1-204ENST00000434023 431 ntTSL 5 BASIC2.2□□□□□ -2.06
SDC1P18827 AL359771.1-201ENST00000441809 379 ntTSL 5 BASIC2.2□□□□□ -2.06
SDC1P18827 MTATP6P26-201ENST00000445926 662 ntBASIC2.2□□□□□ -2.06
SDC1P18827 AC104058.1-201ENST00000448028 297 ntBASIC2.2□□□□□ -2.06
SDC1P18827 AC132479.1-201ENST00000449160 144 ntBASIC2.2□□□□□ -2.06
SDC1P18827 AC046136.1-201ENST00000459855 533 ntTSL 3 BASIC2.2□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 99.7 ms