Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 HMGB1P27-201ENST00000431429 603 ntBASIC4.13□□□□□ -1.75
COL6A1P12109 AC090774.1-201ENST00000435925 246 ntBASIC4.13□□□□□ -1.75
COL6A1P12109 U8.20-201ENST00000459445 131 ntBASIC4.13□□□□□ -1.75
COL6A1P12109 RPL21P10-201ENST00000463521 490 ntBASIC4.13□□□□□ -1.75
COL6A1P12109 AC087884.1-201ENST00000469738 328 ntBASIC4.13□□□□□ -1.75
COL6A1P12109 RPL30P14-201ENST00000482744 348 ntBASIC4.13□□□□□ -1.75
COL6A1P12109 AC022493.2-201ENST00000506122 481 ntBASIC4.13□□□□□ -1.75
COL6A1P12109 RNU6-635P-201ENST00000516651 102 ntBASIC4.13□□□□□ -1.75
COL6A1P12109 RNU6-1271P-201ENST00000517049 105 ntBASIC4.13□□□□□ -1.75
COL6A1P12109 SKP1-203ENST00000517625 876 ntAPPRIS P4 TSL 3 BASIC4.13□□□□□ -1.75
COL6A1P12109 AC069113.1-201ENST00000517763 267 ntBASIC4.13□□□□□ -1.75
COL6A1P12109 TMCO5B-203ENST00000529623 509 ntTSL 4 BASIC4.13□□□□□ -1.75
COL6A1P12109 GNRHR2P1-201ENST00000555315 631 ntBASIC4.13□□□□□ -1.75
COL6A1P12109 MIR3921-201ENST00000577308 85 ntBASIC4.13□□□□□ -1.75
COL6A1P12109 LINC02112-205ENST00000606744 236 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
COL6A1P12109 AC100812.1-201ENST00000607622 580 ntBASIC4.13□□□□□ -1.75
COL6A1P12109 AL161423.1-201ENST00000613700 262 ntBASIC4.13□□□□□ -1.75
COL6A1P12109 AC004696.1-201ENST00000614345 607 ntBASIC4.13□□□□□ -1.75
COL6A1P12109 MIR6076-201ENST00000617521 113 ntBASIC4.13□□□□□ -1.75
COL6A1P12109 BMPR1B-203ENST00000440890 5388 ntTSL 2 BASIC4.13□□□□□ -1.75
COL6A1P12109 MBD5-202ENST00000407073 9512 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
COL6A1P12109 TENM1-201ENST00000371130 12875 ntAPPRIS P3 TSL 1 (best) BASIC4.13□□□□□ -1.75
COL6A1P12109 LINC01376-202ENST00000424895 1949 ntTSL 2 BASIC4.13□□□□□ -1.75
COL6A1P12109 TRIM36-201ENST00000282369 4050 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
COL6A1P12109 MFSD8-236ENST00000641509 4050 ntBASIC4.12□□□□□ -1.75
COL6A1P12109 AGTR1-206ENST00000474935 1795 ntAPPRIS P1 TSL 3 BASIC4.12□□□□□ -1.75
COL6A1P12109 KIAA1524-206ENST00000491772 3877 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
COL6A1P12109 WHAMMP2-201ENST00000512149 5482 ntTSL 5 BASIC4.12□□□□□ -1.75
COL6A1P12109 PLAG1-201ENST00000316981 7322 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
COL6A1P12109 RNU6-306P-201ENST00000384617 107 ntBASIC4.12□□□□□ -1.75
COL6A1P12109 Y_RNA.556-201ENST00000384677 113 ntBASIC4.12□□□□□ -1.75
COL6A1P12109 MIR93-201ENST00000385024 80 ntBASIC4.12□□□□□ -1.75
COL6A1P12109 MIR513A2-201ENST00000385249 127 ntBASIC4.12□□□□□ -1.75
COL6A1P12109 RPS4XP3-201ENST00000398541 413 ntBASIC4.12□□□□□ -1.75
COL6A1P12109 MS4A4E-201ENST00000398984 479 ntTSL 5 BASIC4.12□□□□□ -1.75
COL6A1P12109 RN7SKP58-201ENST00000411010 305 ntBASIC4.12□□□□□ -1.75
COL6A1P12109 HNRNPDLP1-201ENST00000412834 550 ntBASIC4.12□□□□□ -1.75
COL6A1P12109 PPP1R11P2-201ENST00000423543 382 ntBASIC4.12□□□□□ -1.75
COL6A1P12109 UBE2V1P4-201ENST00000425374 344 ntBASIC4.12□□□□□ -1.75
COL6A1P12109 AL078601.2-201ENST00000429444 474 ntTSL 2 BASIC4.12□□□□□ -1.75
COL6A1P12109 ARF4P2-201ENST00000430209 526 ntBASIC4.12□□□□□ -1.75
COL6A1P12109 AL645568.3-201ENST00000433683 316 ntBASIC4.12□□□□□ -1.75
COL6A1P12109 AL591212.2-201ENST00000433923 257 ntBASIC4.12□□□□□ -1.75
COL6A1P12109 AC078993.1-203ENST00000435789 1037 ntTSL 5 BASIC4.12□□□□□ -1.75
COL6A1P12109 AC012070.1-201ENST00000442062 427 ntTSL 3 BASIC4.12□□□□□ -1.75
COL6A1P12109 CPHL1P-203ENST00000471823 523 ntTSL 5 BASIC4.12□□□□□ -1.75
COL6A1P12109 AC084198.1-201ENST00000477747 402 ntBASIC4.12□□□□□ -1.75
COL6A1P12109 AC110794.1-201ENST00000505816 425 ntBASIC4.12□□□□□ -1.75
COL6A1P12109 RNA5SP154-201ENST00000516193 111 ntBASIC4.12□□□□□ -1.75
COL6A1P12109 SCARNA16.2-201ENST00000516520 172 ntBASIC4.12□□□□□ -1.75
COL6A1P12109 PKIA-203ENST00000518467 588 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
COL6A1P12109 AP002992.1-202ENST00000530842 551 ntTSL 2 BASIC4.12□□□□□ -1.75
COL6A1P12109 LINC02425-201ENST00000536217 376 ntTSL 3 BASIC4.12□□□□□ -1.75
COL6A1P12109 MYL12BP1-201ENST00000569826 507 ntBASIC4.12□□□□□ -1.75
COL6A1P12109 C18orf54-203ENST00000578138 776 ntTSL 3 BASIC4.12□□□□□ -1.75
COL6A1P12109 AC113195.1-201ENST00000579952 141 ntBASIC4.12□□□□□ -1.75
COL6A1P12109 MIR5692A1-201ENST00000580523 69 ntBASIC4.12□□□□□ -1.75
COL6A1P12109 CDC27P3-201ENST00000635418 1910 ntBASIC4.12□□□□□ -1.75
COL6A1P12109 GLCE-202ENST00000559420 4840 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
COL6A1P12109 FAT3-204ENST00000525166 18699 ntTSL 5 BASIC4.12□□□□□ -1.75
COL6A1P12109 TAB3-203ENST00000378930 6255 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
COL6A1P12109 ZNF99-201ENST00000397104 3114 ntAPPRIS P1 TSL 5 BASIC4.12□□□□□ -1.75
COL6A1P12109 ERBB4-203ENST00000402597 11699 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
COL6A1P12109 ATP2B1-202ENST00000359142 6977 ntTSL 5 BASIC4.11□□□□□ -1.75
COL6A1P12109 ZMYND11-217ENST00000627286 3914 ntTSL 5 BASIC4.11□□□□□ -1.75
COL6A1P12109 COPS2-203ENST00000542928 1580 ntTSL 2 BASIC4.11□□□□□ -1.75
COL6A1P12109 MME-201ENST00000360490 2360 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
COL6A1P12109 DDX60L-201ENST00000260184 6754 ntAPPRIS P1 TSL 5 BASIC4.11□□□□□ -1.75
COL6A1P12109 TLR8-202ENST00000311912 3367 ntAPPRIS P4 TSL 1 (best) BASIC4.11□□□□□ -1.75
COL6A1P12109 RNU5A-1-201ENST00000362698 116 ntBASIC4.11□□□□□ -1.75
COL6A1P12109 Y_RNA.389-201ENST00000383924 113 ntBASIC4.11□□□□□ -1.75
COL6A1P12109 Y_RNA.496-201ENST00000384444 101 ntBASIC4.11□□□□□ -1.75
COL6A1P12109 DEFB116-201ENST00000400549 309 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
COL6A1P12109 AL138878.1-201ENST00000405131 347 ntBASIC4.11□□□□□ -1.75
COL6A1P12109 AL158839.1-201ENST00000413943 575 ntTSL 2 BASIC4.11□□□□□ -1.75
COL6A1P12109 BX842559.1-201ENST00000419615 532 ntBASIC4.11□□□□□ -1.75
COL6A1P12109 C1orf195-201ENST00000424792 255 ntTSL 2 BASIC4.11□□□□□ -1.75
COL6A1P12109 AC099799.1-201ENST00000439809 192 ntBASIC4.11□□□□□ -1.75
COL6A1P12109 PLCB1-IT1-201ENST00000441231 373 ntTSL 3 BASIC4.11□□□□□ -1.75
COL6A1P12109 CECR9-201ENST00000453421 199 ntBASIC4.11□□□□□ -1.75
COL6A1P12109 RNU7-138P-201ENST00000459479 64 ntBASIC4.11□□□□□ -1.75
COL6A1P12109 HMGB1P30-201ENST00000492455 606 ntBASIC4.11□□□□□ -1.75
COL6A1P12109 RAC1P2-201ENST00000511164 579 ntBASIC4.11□□□□□ -1.75
COL6A1P12109 RN7SKP258-201ENST00000517151 304 ntBASIC4.11□□□□□ -1.75
COL6A1P12109 AC009812.2-201ENST00000517657 457 ntBASIC4.11□□□□□ -1.75
COL6A1P12109 AC127894.1-201ENST00000548266 851 ntTSL 3 BASIC4.11□□□□□ -1.75
COL6A1P12109 PCED1B-AS1-208ENST00000551898 359 ntTSL 3 BASIC4.11□□□□□ -1.75
COL6A1P12109 EIF4BP1-201ENST00000554881 351 ntBASIC4.11□□□□□ -1.75
COL6A1P12109 AC120045.1-201ENST00000563502 251 ntTSL 3 BASIC4.11□□□□□ -1.75
COL6A1P12109 AC139426.2-201ENST00000568289 251 ntTSL 3 BASIC4.11□□□□□ -1.75
COL6A1P12109 AC007631.1-201ENST00000578545 189 ntTSL 3 BASIC4.11□□□□□ -1.75
COL6A1P12109 RPL38-208ENST00000584577 344 ntAPPRIS ALT1 TSL 3 BASIC4.11□□□□□ -1.75
COL6A1P12109 AC011494.1-201ENST00000596454 237 ntBASIC4.11□□□□□ -1.75
COL6A1P12109 AC012119.1-201ENST00000603184 222 ntBASIC4.11□□□□□ -1.75
COL6A1P12109 AL359962.2-201ENST00000610044 303 ntTSL 5 BASIC4.11□□□□□ -1.75
COL6A1P12109 MIR7112-201ENST00000616126 65 ntBASIC4.11□□□□□ -1.75
COL6A1P12109 AL591424.2-201ENST00000617023 128 ntBASIC4.11□□□□□ -1.75
COL6A1P12109 NAA50-211ENST00000630058 177 ntTSL 5 BASIC4.11□□□□□ -1.75
COL6A1P12109 RNF128-202ENST00000324342 2654 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
COL6A1P12109 AKAP6-201ENST00000280979 15006 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 85.9 ms