Protein–RNA interactions for Protein: Q9P1Q0

VPS54, Vacuolar protein sorting-associated protein 54, humanhuman

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54Q9P1Q0 AC104435.1-201ENST00000483483 166 ntBASIC2.48□□□□□ -2.01
VPS54Q9P1Q0 LNX1-AS1-202ENST00000510785 550 ntTSL 2 BASIC2.48□□□□□ -2.01
VPS54Q9P1Q0 AC091965.2-201ENST00000512324 613 ntBASIC2.48□□□□□ -2.01
VPS54Q9P1Q0 RNU6-581P-201ENST00000516214 105 ntBASIC2.48□□□□□ -2.01
VPS54Q9P1Q0 SCARNA24.1-201ENST00000516465 137 ntBASIC2.48□□□□□ -2.01
VPS54Q9P1Q0 SNORA31.11-201ENST00000516528 139 ntBASIC2.48□□□□□ -2.01
VPS54Q9P1Q0 PRELID2P1-201ENST00000552837 301 ntBASIC2.48□□□□□ -2.01
VPS54Q9P1Q0 AL121821.2-201ENST00000556081 394 ntBASIC2.48□□□□□ -2.01
VPS54Q9P1Q0 AC026464.5-201ENST00000562497 722 ntBASIC2.48□□□□□ -2.01
VPS54Q9P1Q0 AC023394.2-201ENST00000581987 792 ntTSL 5 BASIC2.48□□□□□ -2.01
VPS54Q9P1Q0 AL391813.1-201ENST00000603098 260 ntBASIC2.48□□□□□ -2.01
VPS54Q9P1Q0 SEPT7P9-203ENST00000604116 343 ntBASIC2.48□□□□□ -2.01
VPS54Q9P1Q0 COMMD6-213ENST00000626103 120 ntTSL 5 BASIC2.48□□□□□ -2.01
VPS54Q9P1Q0 STX7-202ENST00000367941 15791 ntAPPRIS P1 TSL 1 (best) BASIC2.48□□□□□ -2.01
VPS54Q9P1Q0 RGPD1-204ENST00000559485 5247 ntAPPRIS P2 TSL 1 (best) BASIC2.48□□□□□ -2.01
VPS54Q9P1Q0 FGF7P2-201ENST00000332473 296 ntBASIC2.47□□□□□ -2.01
VPS54Q9P1Q0 MIRLET7G-201ENST00000362280 84 ntBASIC2.47□□□□□ -2.01
VPS54Q9P1Q0 Y_RNA.22-201ENST00000362492 102 ntBASIC2.47□□□□□ -2.01
VPS54Q9P1Q0 IVNS1ABP-201ENST00000367497 746 ntTSL 5 BASIC2.47□□□□□ -2.01
VPS54Q9P1Q0 TSHB-202ENST00000369517 474 ntAPPRIS P1 TSL 1 (best) BASIC2.47□□□□□ -2.01
VPS54Q9P1Q0 Z98749.2-208ENST00000381646 500 ntBASIC2.47□□□□□ -2.01
VPS54Q9P1Q0 RNU6-1072P-201ENST00000384703 107 ntBASIC2.47□□□□□ -2.01
VPS54Q9P1Q0 RNU6-443P-201ENST00000384780 107 ntBASIC2.47□□□□□ -2.01
VPS54Q9P1Q0 MIR301A-201ENST00000385261 86 ntBASIC2.47□□□□□ -2.01
VPS54Q9P1Q0 AL023284.1-201ENST00000403956 276 ntBASIC2.47□□□□□ -2.01
VPS54Q9P1Q0 RN7SKP223-201ENST00000410582 62 ntBASIC2.47□□□□□ -2.01
VPS54Q9P1Q0 OR51A5P-201ENST00000415429 942 ntBASIC2.47□□□□□ -2.01
VPS54Q9P1Q0 AL109913.1-201ENST00000421173 514 ntBASIC2.47□□□□□ -2.01
VPS54Q9P1Q0 AL157884.2-201ENST00000424177 551 ntTSL 3 BASIC2.47□□□□□ -2.01
VPS54Q9P1Q0 RPS24P1-201ENST00000438550 371 ntBASIC2.47□□□□□ -2.01
VPS54Q9P1Q0 AL117336.1-201ENST00000439198 380 ntTSL 2 BASIC2.47□□□□□ -2.01
VPS54Q9P1Q0 AL161651.1-201ENST00000440882 223 ntBASIC2.47□□□□□ -2.01
VPS54Q9P1Q0 RGS5-217ENST00000451759 835 ntTSL 3 BASIC2.47□□□□□ -2.01
VPS54Q9P1Q0 LINC01069-201ENST00000452933 546 ntTSL 5 BASIC2.47□□□□□ -2.01
VPS54Q9P1Q0 SNORD42A-201ENST00000459584 64 ntBASIC2.47□□□□□ -2.01
VPS54Q9P1Q0 AC117386.2-202ENST00000472821 522 ntTSL 3 BASIC2.47□□□□□ -2.01
VPS54Q9P1Q0 AC074033.2-201ENST00000480669 535 ntTSL 3 BASIC2.47□□□□□ -2.01
VPS54Q9P1Q0 GZMAP1-201ENST00000503054 631 ntBASIC2.47□□□□□ -2.01
VPS54Q9P1Q0 ANXA2P1-201ENST00000505539 926 ntBASIC2.47□□□□□ -2.01
VPS54Q9P1Q0 AC110767.1-201ENST00000508374 239 ntTSL 3 BASIC2.47□□□□□ -2.01
VPS54Q9P1Q0 AC108078.2-201ENST00000510750 236 ntBASIC2.47□□□□□ -2.01
VPS54Q9P1Q0 AC107222.1-201ENST00000510899 637 ntBASIC2.47□□□□□ -2.01
VPS54Q9P1Q0 AC010486.1-201ENST00000511793 424 ntBASIC2.47□□□□□ -2.01
VPS54Q9P1Q0 SNORA31.6-201ENST00000516241 130 ntBASIC2.47□□□□□ -2.01
VPS54Q9P1Q0 Vault.3-201ENST00000516676 95 ntBASIC2.47□□□□□ -2.01
VPS54Q9P1Q0 RNU6-572P-201ENST00000516724 80 ntBASIC2.47□□□□□ -2.01
VPS54Q9P1Q0 RNU6-1315P-201ENST00000517187 99 ntBASIC2.47□□□□□ -2.01
VPS54Q9P1Q0 SKP1-203ENST00000517625 876 ntAPPRIS P4 TSL 3 BASIC2.47□□□□□ -2.01
VPS54Q9P1Q0 BTF3P12-201ENST00000519620 469 ntBASIC2.47□□□□□ -2.01
VPS54Q9P1Q0 AC103957.1-202ENST00000519814 735 ntTSL 3 BASIC2.47□□□□□ -2.01
VPS54Q9P1Q0 AP000462.2-203ENST00000540545 715 ntTSL 5 BASIC2.47□□□□□ -2.01
VPS54Q9P1Q0 AC092746.1-201ENST00000542819 562 ntTSL 4 BASIC2.47□□□□□ -2.01
VPS54Q9P1Q0 AC008741.1-201ENST00000569456 510 ntTSL 3 BASIC2.47□□□□□ -2.01
VPS54Q9P1Q0 MIR4658-201ENST00000584344 65 ntBASIC2.47□□□□□ -2.01
VPS54Q9P1Q0 AL356280.1-201ENST00000603614 379 ntBASIC2.47□□□□□ -2.01
VPS54Q9P1Q0 AC090578.1-201ENST00000604955 591 ntBASIC2.47□□□□□ -2.01
VPS54Q9P1Q0 AC135507.1-201ENST00000607214 561 ntBASIC2.47□□□□□ -2.01
VPS54Q9P1Q0 AC126118.1-201ENST00000607744 628 ntBASIC2.47□□□□□ -2.01
VPS54Q9P1Q0 AP001506.1-201ENST00000615444 211 ntBASIC2.47□□□□□ -2.01
VPS54Q9P1Q0 AC008147.4-201ENST00000617570 1204 ntBASIC2.47□□□□□ -2.01
VPS54Q9P1Q0 MIR6132-201ENST00000622083 109 ntBASIC2.47□□□□□ -2.01
VPS54Q9P1Q0 TRIQK-204ENST00000517858 1882 ntTSL 3 BASIC2.47□□□□□ -2.01
VPS54Q9P1Q0 ZNF658B-202ENST00000615961 3375 ntBASIC2.47□□□□□ -2.01
VPS54Q9P1Q0 AGTPBP1-205ENST00000376083 4208 ntAPPRIS P1 TSL 1 (best) BASIC2.47□□□□□ -2.01
VPS54Q9P1Q0 AC080128.1-201ENST00000474389 1917 ntBASIC2.46□□□□□ -2.02
VPS54Q9P1Q0 AC131280.1-202ENST00000624067 4211 ntBASIC2.46□□□□□ -2.02
VPS54Q9P1Q0 RNA5SP126-201ENST00000365092 109 ntBASIC2.46□□□□□ -2.02
VPS54Q9P1Q0 RNU6-641P-201ENST00000384006 107 ntBASIC2.46□□□□□ -2.02
VPS54Q9P1Q0 SNORA24.1-201ENST00000384401 135 ntBASIC2.46□□□□□ -2.02
VPS54Q9P1Q0 SNORA80E-201ENST00000384744 137 ntBASIC2.46□□□□□ -2.02
VPS54Q9P1Q0 SNORA11.4-201ENST00000408823 129 ntBASIC2.46□□□□□ -2.02
VPS54Q9P1Q0 RNU2-39P-201ENST00000410604 198 ntBASIC2.46□□□□□ -2.02
VPS54Q9P1Q0 RNU6-1025P-201ENST00000410629 104 ntBASIC2.46□□□□□ -2.02
VPS54Q9P1Q0 AC006041.1-201ENST00000425322 328 ntTSL 3 BASIC2.46□□□□□ -2.02
VPS54Q9P1Q0 AC007560.1-201ENST00000426912 237 ntBASIC2.46□□□□□ -2.02
VPS54Q9P1Q0 AL356320.1-201ENST00000429616 163 ntBASIC2.46□□□□□ -2.02
VPS54Q9P1Q0 AC020571.1-201ENST00000430904 768 ntTSL 2 BASIC2.46□□□□□ -2.02
VPS54Q9P1Q0 AC073614.1-201ENST00000438690 650 ntBASIC2.46□□□□□ -2.02
VPS54Q9P1Q0 AC073326.1-201ENST00000451832 557 ntTSL 3 BASIC2.46□□□□□ -2.02
VPS54Q9P1Q0 RNU7-26P-201ENST00000458980 63 ntBASIC2.46□□□□□ -2.02
VPS54Q9P1Q0 ZBTB20-AS2-201ENST00000478301 372 ntTSL 2 BASIC2.46□□□□□ -2.02
VPS54Q9P1Q0 AC090096.1-201ENST00000489168 390 ntBASIC2.46□□□□□ -2.02
VPS54Q9P1Q0 AC026801.1-201ENST00000497178 464 ntBASIC2.46□□□□□ -2.02
VPS54Q9P1Q0 RPS3A-208ENST00000509736 576 ntTSL 2 BASIC2.46□□□□□ -2.02
VPS54Q9P1Q0 AC124854.1-202ENST00000513779 339 ntTSL 3 BASIC2.46□□□□□ -2.02
VPS54Q9P1Q0 SNORA31.19-201ENST00000517079 126 ntBASIC2.46□□□□□ -2.02
VPS54Q9P1Q0 AC025524.1-201ENST00000518489 606 ntTSL 4 BASIC2.46□□□□□ -2.02
VPS54Q9P1Q0 AC022784.2-201ENST00000521298 328 ntTSL 2 BASIC2.46□□□□□ -2.02
VPS54Q9P1Q0 AC100768.1-201ENST00000525512 506 ntTSL 3 BASIC2.46□□□□□ -2.02
VPS54Q9P1Q0 AC013417.1-201ENST00000549896 271 ntTSL 5 BASIC2.46□□□□□ -2.02
VPS54Q9P1Q0 AC087883.1-201ENST00000551882 391 ntBASIC2.46□□□□□ -2.02
VPS54Q9P1Q0 MIR1273C-201ENST00000578669 77 ntBASIC2.46□□□□□ -2.02
VPS54Q9P1Q0 MIR3682-201ENST00000581338 84 ntBASIC2.46□□□□□ -2.02
VPS54Q9P1Q0 MIR5002-201ENST00000584713 97 ntBASIC2.46□□□□□ -2.02
VPS54Q9P1Q0 AC005357.2-201ENST00000586473 583 ntTSL 2 BASIC2.46□□□□□ -2.02
VPS54Q9P1Q0 AL121992.2-201ENST00000606262 256 ntBASIC2.46□□□□□ -2.02
VPS54Q9P1Q0 CEP57-213ENST00000541150 2911 ntAPPRIS ALT2 TSL 5 BASIC2.46□□□□□ -2.02
VPS54Q9P1Q0 SENP7-206ENST00000394094 4703 ntAPPRIS ALT2 TSL 1 (best) BASIC2.46□□□□□ -2.02
VPS54Q9P1Q0 AC003984.1-201ENST00000450977 4104 ntTSL 1 (best) BASIC2.45□□□□□ -2.02
VPS54Q9P1Q0 ANKRD36BP1-202ENST00000604892 1417 ntBASIC2.45□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 95 ms