Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 DNAJC2-201ENST00000249270 1846 ntTSL 1 (best) BASIC2.42□□□□□ -2.02
DDX28Q9NUL7 FOXP2-210ENST00000403559 6415 ntTSL 2 BASIC2.42□□□□□ -2.02
DDX28Q9NUL7 ANKRD36BP1-202ENST00000604892 1417 ntBASIC2.42□□□□□ -2.02
DDX28Q9NUL7 ZDBF2-202ENST00000611847 9890 ntTSL 5 BASIC2.41□□□□□ -2.02
DDX28Q9NUL7 ARHGAP11A-207ENST00000565905 3318 ntTSL 2 BASIC2.41□□□□□ -2.02
DDX28Q9NUL7 DEFB114-201ENST00000322066 253 ntAPPRIS P1 TSL 1 (best) BASIC2.41□□□□□ -2.02
DDX28Q9NUL7 MIR412-201ENST00000362142 91 ntBASIC2.41□□□□□ -2.02
DDX28Q9NUL7 Y_RNA.77-201ENST00000362962 107 ntBASIC2.41□□□□□ -2.02
DDX28Q9NUL7 RNU6-898P-201ENST00000365627 104 ntBASIC2.41□□□□□ -2.02
DDX28Q9NUL7 SNORA75B-201ENST00000384053 137 ntBASIC2.41□□□□□ -2.02
DDX28Q9NUL7 AL445529.1-201ENST00000398713 389 ntBASIC2.41□□□□□ -2.02
DDX28Q9NUL7 AC133106.1-201ENST00000419029 397 ntTSL 3 BASIC2.41□□□□□ -2.02
DDX28Q9NUL7 U51244.1-201ENST00000423120 374 ntTSL 3 BASIC2.41□□□□□ -2.02
DDX28Q9NUL7 MTCYBP5-201ENST00000423752 1135 ntBASIC2.41□□□□□ -2.02
DDX28Q9NUL7 MTCO3P30-201ENST00000426425 670 ntBASIC2.41□□□□□ -2.02
DDX28Q9NUL7 LINC02532-205ENST00000430094 628 ntTSL 5 BASIC2.41□□□□□ -2.02
DDX28Q9NUL7 AL162725.2-201ENST00000430545 748 ntTSL 5 BASIC2.41□□□□□ -2.02
DDX28Q9NUL7 PCDH9-AS1-201ENST00000430861 532 ntTSL 2 BASIC2.41□□□□□ -2.02
DDX28Q9NUL7 AC105272.1-201ENST00000438604 198 ntBASIC2.41□□□□□ -2.02
DDX28Q9NUL7 AL031667.1-201ENST00000440222 725 ntBASIC2.41□□□□□ -2.02
DDX28Q9NUL7 KATNBL1P3-201ENST00000443475 909 ntBASIC2.41□□□□□ -2.02
DDX28Q9NUL7 IFNA11P-201ENST00000446352 526 ntBASIC2.41□□□□□ -2.02
DDX28Q9NUL7 AC069549.1-201ENST00000451584 499 ntTSL 3 BASIC2.41□□□□□ -2.02
DDX28Q9NUL7 AL441985.1-201ENST00000457727 251 ntBASIC2.41□□□□□ -2.02
DDX28Q9NUL7 RNU6-956P-201ENST00000458868 103 ntBASIC2.41□□□□□ -2.02
DDX28Q9NUL7 AC022493.1-201ENST00000492984 337 ntBASIC2.41□□□□□ -2.02
DDX28Q9NUL7 FAM92A1P2-202ENST00000504766 877 ntBASIC2.41□□□□□ -2.02
DDX28Q9NUL7 ARL2BPP4-201ENST00000506854 471 ntBASIC2.41□□□□□ -2.02
DDX28Q9NUL7 AC117460.1-201ENST00000508964 467 ntTSL 3 BASIC2.41□□□□□ -2.02
DDX28Q9NUL7 MTCO3P28-201ENST00000513351 515 ntBASIC2.41□□□□□ -2.02
DDX28Q9NUL7 AC103957.1-201ENST00000517681 503 ntTSL 3 BASIC2.41□□□□□ -2.02
DDX28Q9NUL7 BTF3P12-201ENST00000519620 469 ntBASIC2.41□□□□□ -2.02
DDX28Q9NUL7 AF117829.1-203ENST00000520306 421 ntTSL 5 BASIC2.41□□□□□ -2.02
DDX28Q9NUL7 AP003730.2-202ENST00000527281 774 ntTSL 3 BASIC2.41□□□□□ -2.02
DDX28Q9NUL7 OR5BN1P-201ENST00000532955 829 ntBASIC2.41□□□□□ -2.02
DDX28Q9NUL7 AP000873.5-201ENST00000533906 236 ntBASIC2.41□□□□□ -2.02
DDX28Q9NUL7 ZNF84-205ENST00000535439 647 ntTSL 5 BASIC2.41□□□□□ -2.02
DDX28Q9NUL7 PRELID2P1-201ENST00000552837 301 ntBASIC2.41□□□□□ -2.02
DDX28Q9NUL7 AC110760.3-201ENST00000598794 467 ntBASIC2.41□□□□□ -2.02
DDX28Q9NUL7 AL356280.1-201ENST00000603614 379 ntBASIC2.41□□□□□ -2.02
DDX28Q9NUL7 AC087045.1-201ENST00000605856 382 ntBASIC2.41□□□□□ -2.02
DDX28Q9NUL7 U6.42-201ENST00000618440 107 ntBASIC2.41□□□□□ -2.02
DDX28Q9NUL7 CYLC2-201ENST00000374798 2171 ntAPPRIS P1 TSL 1 (best) BASIC2.41□□□□□ -2.02
DDX28Q9NUL7 TAB3-205ENST00000378933 6671 ntAPPRIS P1 TSL 1 (best) BASIC2.41□□□□□ -2.02
DDX28Q9NUL7 CKAP2P1-201ENST00000555477 2049 ntBASIC2.41□□□□□ -2.02
DDX28Q9NUL7 DNAH7-201ENST00000312428 12394 ntAPPRIS P1 TSL 1 (best) BASIC2.4□□□□□ -2.02
DDX28Q9NUL7 RGS18-201ENST00000367460 2150 ntAPPRIS P1 TSL 1 (best) BASIC2.4□□□□□ -2.02
DDX28Q9NUL7 TAB2-201ENST00000367456 4553 ntAPPRIS P1 TSL 5 BASIC2.4□□□□□ -2.02
DDX28Q9NUL7 MTND5P30-201ENST00000452896 1731 ntBASIC2.4□□□□□ -2.02
DDX28Q9NUL7 DLEU2_6.3-201ENST00000340052 136 ntBASIC2.4□□□□□ -2.03
DDX28Q9NUL7 MDM2-207ENST00000360430 891 ntTSL 1 (best) BASIC2.4□□□□□ -2.03
DDX28Q9NUL7 RNA5SP126-201ENST00000365092 109 ntBASIC2.4□□□□□ -2.03
DDX28Q9NUL7 RNU6-74P-201ENST00000384235 107 ntBASIC2.4□□□□□ -2.03
DDX28Q9NUL7 RNU6-748P-201ENST00000384648 107 ntBASIC2.4□□□□□ -2.03
DDX28Q9NUL7 MIR147B-201ENST00000390185 80 ntBASIC2.4□□□□□ -2.03
DDX28Q9NUL7 MDM2-208ENST00000393410 732 ntTSL 1 (best) BASIC2.4□□□□□ -2.03
DDX28Q9NUL7 MDM2-210ENST00000393413 657 ntTSL 1 (best) BASIC2.4□□□□□ -2.03
DDX28Q9NUL7 RNU4ATAC16P-201ENST00000408512 126 ntBASIC2.4□□□□□ -2.03
DDX28Q9NUL7 RNA5SP111-201ENST00000411386 101 ntBASIC2.4□□□□□ -2.03
DDX28Q9NUL7 LINC01312-201ENST00000412745 775 ntTSL 3 BASIC2.4□□□□□ -2.03
DDX28Q9NUL7 CALM2P2-201ENST00000428512 440 ntBASIC2.4□□□□□ -2.03
DDX28Q9NUL7 LINC01626-201ENST00000431997 452 ntTSL 3 BASIC2.4□□□□□ -2.03
DDX28Q9NUL7 AL157937.1-201ENST00000435092 443 ntTSL 3 BASIC2.4□□□□□ -2.03
DDX28Q9NUL7 NFIA-AS1-201ENST00000442027 384 ntTSL 2 BASIC2.4□□□□□ -2.03
DDX28Q9NUL7 NDUFB1P2-201ENST00000449477 176 ntBASIC2.4□□□□□ -2.03
DDX28Q9NUL7 AL121769.1-201ENST00000469473 401 ntBASIC2.4□□□□□ -2.03
DDX28Q9NUL7 AL359273.1-202ENST00000505585 905 ntTSL 1 (best) BASIC2.4□□□□□ -2.03
DDX28Q9NUL7 HIGD1AP13-201ENST00000509878 289 ntBASIC2.4□□□□□ -2.03
DDX28Q9NUL7 RNU6-685P-201ENST00000517088 95 ntBASIC2.4□□□□□ -2.03
DDX28Q9NUL7 AC109329.2-201ENST00000519658 482 ntBASIC2.4□□□□□ -2.03
DDX28Q9NUL7 RANP3-201ENST00000530970 276 ntBASIC2.4□□□□□ -2.03
DDX28Q9NUL7 RGS4-209ENST00000531057 544 ntTSL 4 BASIC2.4□□□□□ -2.03
DDX28Q9NUL7 AC008114.1-201ENST00000544122 427 ntTSL 2 BASIC2.4□□□□□ -2.03
DDX28Q9NUL7 AC090049.1-201ENST00000551075 1011 ntTSL 3 BASIC2.4□□□□□ -2.03
DDX28Q9NUL7 MIR548AC-201ENST00000585049 88 ntBASIC2.4□□□□□ -2.03
DDX28Q9NUL7 AL645944.1-201ENST00000603857 493 ntBASIC2.4□□□□□ -2.03
DDX28Q9NUL7 AL670379.4-201ENST00000605279 254 ntBASIC2.4□□□□□ -2.03
DDX28Q9NUL7 AL512625.3-207ENST00000609749 477 ntTSL 3 BASIC2.4□□□□□ -2.03
DDX28Q9NUL7 DLEU2_6.2-201ENST00000620994 136 ntBASIC2.4□□□□□ -2.03
DDX28Q9NUL7 IGHVIII-44-202ENST00000636235 289 ntBASIC2.4□□□□□ -2.03
DDX28Q9NUL7 AC080128.1-201ENST00000474389 1917 ntBASIC2.4□□□□□ -2.03
DDX28Q9NUL7 AMY2B-208ENST00000610648 1736 ntAPPRIS P1 TSL 1 (best) BASIC2.39□□□□□ -2.03
DDX28Q9NUL7 MTND4P27-201ENST00000450813 1354 ntBASIC2.39□□□□□ -2.03
DDX28Q9NUL7 ANKRD36BP1-201ENST00000358576 1779 ntBASIC2.39□□□□□ -2.03
DDX28Q9NUL7 VBP1-204ENST00000625964 1547 ntTSL 5 BASIC2.39□□□□□ -2.03
DDX28Q9NUL7 EYS-211ENST00000503581 10589 ntAPPRIS P3 TSL 5 BASIC2.39□□□□□ -2.03
DDX28Q9NUL7 SNORD115-7-201ENST00000365306 82 ntBASIC2.39□□□□□ -2.03
DDX28Q9NUL7 Y_RNA.367-201ENST00000365544 101 ntBASIC2.39□□□□□ -2.03
DDX28Q9NUL7 MIR524-201ENST00000385242 87 ntBASIC2.39□□□□□ -2.03
DDX28Q9NUL7 MIR1302-8-201ENST00000408342 128 ntBASIC2.39□□□□□ -2.03
DDX28Q9NUL7 Y_RNA.623-201ENST00000411128 95 ntBASIC2.39□□□□□ -2.03
DDX28Q9NUL7 AL031779.1-201ENST00000415663 330 ntBASIC2.39□□□□□ -2.03
DDX28Q9NUL7 AC092660.1-201ENST00000420648 371 ntTSL 2 BASIC2.39□□□□□ -2.03
DDX28Q9NUL7 LINC01351-201ENST00000424735 526 ntTSL 2 BASIC2.39□□□□□ -2.03
DDX28Q9NUL7 AC133104.1-201ENST00000429100 218 ntBASIC2.39□□□□□ -2.03
DDX28Q9NUL7 AL139397.1-201ENST00000430456 644 ntTSL 2 BASIC2.39□□□□□ -2.03
DDX28Q9NUL7 INTS6L-AS1-201ENST00000430820 398 ntTSL 3 BASIC2.39□□□□□ -2.03
DDX28Q9NUL7 AL627311.1-201ENST00000431514 115 ntBASIC2.39□□□□□ -2.03
DDX28Q9NUL7 AC087499.2-201ENST00000432861 149 ntBASIC2.39□□□□□ -2.03
DDX28Q9NUL7 AL135938.1-201ENST00000443141 297 ntBASIC2.39□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 132.1 ms