Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 AC146507.2-201ENST00000460608 476 ntBASIC3.03□□□□□ -1.92
COL28A1Q2UY09 MGC32805-203ENST00000506053 652 ntTSL 3 BASIC3.03□□□□□ -1.92
COL28A1Q2UY09 AC091885.1-201ENST00000506658 268 ntBASIC3.03□□□□□ -1.92
COL28A1Q2UY09 AC009901.1-201ENST00000506703 541 ntBASIC3.03□□□□□ -1.92
COL28A1Q2UY09 MTCO3P9-201ENST00000506989 781 ntBASIC3.03□□□□□ -1.92
COL28A1Q2UY09 AC114786.4-201ENST00000508771 728 ntBASIC3.03□□□□□ -1.92
COL28A1Q2UY09 AC034223.1-201ENST00000511054 599 ntTSL 3 BASIC3.03□□□□□ -1.92
COL28A1Q2UY09 SNORA31.21-201ENST00000517180 77 ntBASIC3.03□□□□□ -1.92
COL28A1Q2UY09 LINCR-0001-203ENST00000524047 545 ntTSL 4 BASIC3.03□□□□□ -1.92
COL28A1Q2UY09 LINC02309-201ENST00000553679 207 ntTSL 3 BASIC3.03□□□□□ -1.92
COL28A1Q2UY09 MIR2682-201ENST00000580305 110 ntBASIC3.03□□□□□ -1.92
COL28A1Q2UY09 AC004852.3-201ENST00000614131 326 ntBASIC3.03□□□□□ -1.92
COL28A1Q2UY09 LINC01515-217ENST00000620859 694 ntTSL 5 BASIC3.03□□□□□ -1.92
COL28A1Q2UY09 AC010338.1-201ENST00000621823 717 ntBASIC3.03□□□□□ -1.92
COL28A1Q2UY09 CCDC30-212ENST00000507855 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC3.02□□□□□ -1.93
COL28A1Q2UY09 OXR1-205ENST00000442977 2956 ntTSL 2 BASIC3.02□□□□□ -1.93
COL28A1Q2UY09 ANP32E-209ENST00000616917 2989 ntTSL 2 BASIC3.02□□□□□ -1.93
COL28A1Q2UY09 IL33-201ENST00000381434 2641 ntAPPRIS P1 TSL 1 (best) BASIC3.02□□□□□ -1.93
COL28A1Q2UY09 OR2L2-203ENST00000642011 4225 ntAPPRIS P1 BASIC3.02□□□□□ -1.93
COL28A1Q2UY09 RNU6-1090P-201ENST00000364065 94 ntBASIC3.02□□□□□ -1.93
COL28A1Q2UY09 SNORA71.1-201ENST00000364523 117 ntBASIC3.02□□□□□ -1.93
COL28A1Q2UY09 RNU6-1127P-201ENST00000384580 107 ntBASIC3.02□□□□□ -1.93
COL28A1Q2UY09 MIR578-201ENST00000384828 96 ntBASIC3.02□□□□□ -1.93
COL28A1Q2UY09 TRAJ40-201ENST00000390497 61 ntAPPRIS P1 BASIC3.02□□□□□ -1.93
COL28A1Q2UY09 SNORD115-47-201ENST00000391226 86 ntBASIC3.02□□□□□ -1.93
COL28A1Q2UY09 MIR1277-201ENST00000408536 78 ntBASIC3.02□□□□□ -1.93
COL28A1Q2UY09 CTNNA2-204ENST00000409266 432 ntTSL 3 BASIC3.02□□□□□ -1.93
COL28A1Q2UY09 AL160162.1-202ENST00000417654 244 ntTSL 3 BASIC3.02□□□□□ -1.93
COL28A1Q2UY09 NUP35P1-201ENST00000422734 947 ntBASIC3.02□□□□□ -1.93
COL28A1Q2UY09 GYPB-201ENST00000429670 239 ntTSL 1 (best) BASIC3.02□□□□□ -1.93
COL28A1Q2UY09 AL080284.1-201ENST00000434493 442 ntTSL 2 BASIC3.02□□□□□ -1.93
COL28A1Q2UY09 AC098831.1-201ENST00000440661 216 ntBASIC3.02□□□□□ -1.93
COL28A1Q2UY09 AL353780.1-201ENST00000455583 458 ntTSL 2 BASIC3.02□□□□□ -1.93
COL28A1Q2UY09 AL031183.1-201ENST00000457667 207 ntBASIC3.02□□□□□ -1.93
COL28A1Q2UY09 RPS27AP10-201ENST00000496103 208 ntBASIC3.02□□□□□ -1.93
COL28A1Q2UY09 RPL38P4-201ENST00000502376 214 ntBASIC3.02□□□□□ -1.93
COL28A1Q2UY09 AC105389.2-201ENST00000506475 435 ntTSL 3 BASIC3.02□□□□□ -1.93
COL28A1Q2UY09 AC112206.3-201ENST00000514578 389 ntBASIC3.02□□□□□ -1.93
COL28A1Q2UY09 AC004054.1-201ENST00000515111 270 ntTSL 3 BASIC3.02□□□□□ -1.93
COL28A1Q2UY09 RN7SKP132-201ENST00000516001 208 ntBASIC3.02□□□□□ -1.93
COL28A1Q2UY09 RNU1-41P-201ENST00000516161 162 ntBASIC3.02□□□□□ -1.93
COL28A1Q2UY09 RNU1-48P-201ENST00000516400 162 ntBASIC3.02□□□□□ -1.93
COL28A1Q2UY09 AC025755.1-201ENST00000521306 278 ntBASIC3.02□□□□□ -1.93
COL28A1Q2UY09 LINC02305-201ENST00000554142 476 ntTSL 3 BASIC3.02□□□□□ -1.93
COL28A1Q2UY09 SNORA59B-202ENST00000578183 701 ntBASIC3.02□□□□□ -1.93
COL28A1Q2UY09 MIR3941-201ENST00000582572 103 ntBASIC3.02□□□□□ -1.93
COL28A1Q2UY09 UBL5P2-201ENST00000583788 219 ntBASIC3.02□□□□□ -1.93
COL28A1Q2UY09 LINC01928-201ENST00000591029 504 ntTSL 3 BASIC3.02□□□□□ -1.93
COL28A1Q2UY09 ZNRD1-AS1_3.8-201ENST00000611686 104 ntBASIC3.02□□□□□ -1.93
COL28A1Q2UY09 uc_338.1-201ENST00000612113 180 ntBASIC3.02□□□□□ -1.93
COL28A1Q2UY09 DISC2.1-201ENST00000612827 205 ntBASIC3.02□□□□□ -1.93
COL28A1Q2UY09 AL161629.2-201ENST00000615347 275 ntBASIC3.02□□□□□ -1.93
COL28A1Q2UY09 CYP3A43-217ENST00000631161 328 ntTSL 5 BASIC3.02□□□□□ -1.93
COL28A1Q2UY09 GYPB-216ENST00000638448 363 ntAPPRIS P1 TSL 1 (best) BASIC3.02□□□□□ -1.93
COL28A1Q2UY09 MUC7-202ENST00000413702 2540 ntAPPRIS P2 TSL 4 BASIC3.02□□□□□ -1.93
COL28A1Q2UY09 ZNF680-202ENST00000447137 2159 ntTSL 2 BASIC3.02□□□□□ -1.93
COL28A1Q2UY09 AC091564.4-201ENST00000533934 2194 ntBASIC3.02□□□□□ -1.93
COL28A1Q2UY09 ANGPTL1-201ENST00000234816 3348 ntAPPRIS P1 TSL 1 (best) BASIC3.02□□□□□ -1.93
COL28A1Q2UY09 CATSPERB-201ENST00000256343 3623 ntAPPRIS P2 TSL 1 (best) BASIC3.02□□□□□ -1.93
COL28A1Q2UY09 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC3.02□□□□□ -1.93
COL28A1Q2UY09 ACTR6-212ENST00000552376 1659 ntTSL 5 BASIC3.01□□□□□ -1.93
COL28A1Q2UY09 ARHGAP28-204ENST00000419673 5492 ntAPPRIS P2 TSL 1 (best) BASIC3.01□□□□□ -1.93
COL28A1Q2UY09 AC008669.1-201ENST00000565823 2178 ntBASIC3.01□□□□□ -1.93
COL28A1Q2UY09 RASA1-202ENST00000456692 3776 ntAPPRIS ALT2 TSL 1 (best) BASIC3.01□□□□□ -1.93
COL28A1Q2UY09 PIK3C2G-202ENST00000433979 4840 ntAPPRIS P1 TSL 5 BASIC3.01□□□□□ -1.93
COL28A1Q2UY09 AC062016.1-201ENST00000355719 319 ntBASIC3.01□□□□□ -1.93
COL28A1Q2UY09 RNU1-70P-201ENST00000362618 164 ntBASIC3.01□□□□□ -1.93
COL28A1Q2UY09 RNU6-451P-201ENST00000362921 107 ntBASIC3.01□□□□□ -1.93
COL28A1Q2UY09 Y_RNA.89-201ENST00000363031 102 ntBASIC3.01□□□□□ -1.93
COL28A1Q2UY09 RNU6-715P-201ENST00000365204 103 ntBASIC3.01□□□□□ -1.93
COL28A1Q2UY09 MAPK8-202ENST00000374174 739 ntTSL 3 BASIC3.01□□□□□ -1.93
COL28A1Q2UY09 AKR1C1-201ENST00000380859 858 ntTSL 3 BASIC3.01□□□□□ -1.93
COL28A1Q2UY09 Y_RNA.399-201ENST00000383955 105 ntBASIC3.01□□□□□ -1.93
COL28A1Q2UY09 AL139039.1-201ENST00000401900 692 ntBASIC3.01□□□□□ -1.93
COL28A1Q2UY09 AL592114.1-201ENST00000403842 483 ntBASIC3.01□□□□□ -1.93
COL28A1Q2UY09 BTF3P7-201ENST00000407097 488 ntBASIC3.01□□□□□ -1.93
COL28A1Q2UY09 AL353621.1-201ENST00000418219 243 ntBASIC3.01□□□□□ -1.93
COL28A1Q2UY09 AC016710.1-201ENST00000421326 466 ntTSL 3 BASIC3.01□□□□□ -1.93
COL28A1Q2UY09 BPY2DP-201ENST00000422208 265 ntBASIC3.01□□□□□ -1.93
COL28A1Q2UY09 AL353729.1-201ENST00000425044 720 ntBASIC3.01□□□□□ -1.93
COL28A1Q2UY09 GTF2IP20-201ENST00000431663 360 ntBASIC3.01□□□□□ -1.93
COL28A1Q2UY09 LINC01626-201ENST00000431997 452 ntTSL 3 BASIC3.01□□□□□ -1.93
COL28A1Q2UY09 AL353705.1-201ENST00000433468 480 ntBASIC3.01□□□□□ -1.93
COL28A1Q2UY09 AC091133.1-201ENST00000435491 483 ntTSL 3 BASIC3.01□□□□□ -1.93
COL28A1Q2UY09 AL035258.1-201ENST00000439450 439 ntTSL 3 BASIC3.01□□□□□ -1.93
COL28A1Q2UY09 AC095032.1-201ENST00000444810 527 ntTSL 3 BASIC3.01□□□□□ -1.93
COL28A1Q2UY09 AC128713.1-201ENST00000471495 306 ntBASIC3.01□□□□□ -1.93
COL28A1Q2UY09 LINC02220-201ENST00000510065 270 ntTSL 5 BASIC3.01□□□□□ -1.93
COL28A1Q2UY09 RNA5SP401-201ENST00000515920 127 ntBASIC3.01□□□□□ -1.93
COL28A1Q2UY09 RNU4-29P-201ENST00000515943 174 ntBASIC3.01□□□□□ -1.93
COL28A1Q2UY09 RNU6-572P-201ENST00000516724 80 ntBASIC3.01□□□□□ -1.93
COL28A1Q2UY09 SNORA31.19-201ENST00000517079 126 ntBASIC3.01□□□□□ -1.93
COL28A1Q2UY09 AC103853.2-201ENST00000519805 716 ntTSL 3 BASIC3.01□□□□□ -1.93
COL28A1Q2UY09 AC090124.2-201ENST00000527727 563 ntTSL 4 BASIC3.01□□□□□ -1.93
COL28A1Q2UY09 AC068205.1-204ENST00000532989 481 ntTSL 3 BASIC3.01□□□□□ -1.93
COL28A1Q2UY09 AC007619.1-201ENST00000544086 412 ntTSL 5 BASIC3.01□□□□□ -1.93
COL28A1Q2UY09 AC024270.4-201ENST00000570202 421 ntTSL 3 BASIC3.01□□□□□ -1.93
COL28A1Q2UY09 AC091043.1-201ENST00000579830 453 ntTSL 3 BASIC3.01□□□□□ -1.93
COL28A1Q2UY09 MSMB-202ENST00000582163 488 ntAPPRIS P1 TSL 1 (best) BASIC3.01□□□□□ -1.93
COL28A1Q2UY09 AC015908.4-201ENST00000582334 575 ntTSL 4 BASIC3.01□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 140 ms