Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 CYLC2-201ENST00000374798 2171 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
CTCFP49711 RGS22-214ENST00000523287 4033 ntAPPRIS ALT2 TSL 2 BASIC3.25□□□□□ -1.89
CTCFP49711 AL445259.1-201ENST00000587106 2984 ntTSL 5 BASIC3.24□□□□□ -1.89
CTCFP49711 SLC4A7-201ENST00000295736 7757 ntAPPRIS P3 TSL 1 (best) BASIC3.24□□□□□ -1.89
CTCFP49711 JMJD1C-210ENST00000542921 8149 ntAPPRIS ALT2 TSL 1 (best) BASIC3.24□□□□□ -1.89
CTCFP49711 PRKAA2-201ENST00000371244 9347 ntAPPRIS P2 TSL 1 (best) BASIC3.24□□□□□ -1.89
CTCFP49711 MLF1-203ENST00000392822 2157 ntTSL 5 BASIC3.24□□□□□ -1.89
CTCFP49711 Y_RNA.3-201ENST00000362331 103 ntBASIC3.24□□□□□ -1.89
CTCFP49711 RNU6-1120P-201ENST00000362988 108 ntBASIC3.24□□□□□ -1.89
CTCFP49711 SNORA62.1-201ENST00000364287 154 ntBASIC3.24□□□□□ -1.89
CTCFP49711 RPL21P75-201ENST00000396599 483 ntBASIC3.24□□□□□ -1.89
CTCFP49711 RPL21P28-201ENST00000401418 483 ntBASIC3.24□□□□□ -1.89
CTCFP49711 AL592114.1-201ENST00000403842 483 ntBASIC3.24□□□□□ -1.89
CTCFP49711 RNU2-9P-201ENST00000410194 145 ntBASIC3.24□□□□□ -1.89
CTCFP49711 AL157709.1-201ENST00000412695 424 ntTSL 3 BASIC3.24□□□□□ -1.89
CTCFP49711 AL109914.1-201ENST00000414740 146 ntTSL 5 BASIC3.24□□□□□ -1.89
CTCFP49711 AC245054.2-201ENST00000415639 319 ntBASIC3.24□□□□□ -1.89
CTCFP49711 RPL7P10-201ENST00000417407 739 ntBASIC3.24□□□□□ -1.89
CTCFP49711 AL353193.1-201ENST00000421444 268 ntBASIC3.24□□□□□ -1.89
CTCFP49711 LINC00368-201ENST00000422994 650 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
CTCFP49711 LINC00407-201ENST00000426509 295 ntTSL 5 BASIC3.24□□□□□ -1.89
CTCFP49711 RPS12P18-201ENST00000442381 270 ntBASIC3.24□□□□□ -1.89
CTCFP49711 MTND1P1-201ENST00000445453 368 ntBASIC3.24□□□□□ -1.89
CTCFP49711 UQCRHP3-201ENST00000451503 251 ntBASIC3.24□□□□□ -1.89
CTCFP49711 FABP5P13-201ENST00000452144 328 ntBASIC3.24□□□□□ -1.89
CTCFP49711 RPL21P39-201ENST00000463605 483 ntBASIC3.24□□□□□ -1.89
CTCFP49711 RPL21P93-201ENST00000480465 489 ntBASIC3.24□□□□□ -1.89
CTCFP49711 AC233702.1-201ENST00000482905 502 ntBASIC3.24□□□□□ -1.89
CTCFP49711 AC087190.1-201ENST00000484462 480 ntBASIC3.24□□□□□ -1.89
CTCFP49711 AC093591.1-201ENST00000491435 481 ntBASIC3.24□□□□□ -1.89
CTCFP49711 AC079382.1-201ENST00000493346 557 ntBASIC3.24□□□□□ -1.89
CTCFP49711 RPL21P16-201ENST00000495531 483 ntBASIC3.24□□□□□ -1.89
CTCFP49711 AC109927.2-201ENST00000506416 303 ntBASIC3.24□□□□□ -1.89
CTCFP49711 RBBP4P6-201ENST00000508098 202 ntBASIC3.24□□□□□ -1.89
CTCFP49711 AC098591.2-201ENST00000510152 315 ntBASIC3.24□□□□□ -1.89
CTCFP49711 RNA5SP165-201ENST00000517142 115 ntBASIC3.24□□□□□ -1.89
CTCFP49711 AF117829.1-204ENST00000519854 284 ntTSL 3 BASIC3.24□□□□□ -1.89
CTCFP49711 AP003730.2-202ENST00000527281 774 ntTSL 3 BASIC3.24□□□□□ -1.89
CTCFP49711 OR4R1P-201ENST00000529879 463 ntBASIC3.24□□□□□ -1.89
CTCFP49711 MIR4498-201ENST00000577599 66 ntBASIC3.24□□□□□ -1.89
CTCFP49711 MIR4775-201ENST00000581168 75 ntBASIC3.24□□□□□ -1.89
CTCFP49711 AC024610.1-201ENST00000582685 323 ntTSL 3 BASIC3.24□□□□□ -1.89
CTCFP49711 AC008521.1-201ENST00000587471 187 ntBASIC3.24□□□□□ -1.89
CTCFP49711 BNIP3P9-201ENST00000603714 553 ntBASIC3.24□□□□□ -1.89
CTCFP49711 MIR15A-201ENST00000607334 83 ntBASIC3.24□□□□□ -1.89
CTCFP49711 C8orf59-208ENST00000612809 475 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
CTCFP49711 AC073308.1-201ENST00000623696 305 ntBASIC3.24□□□□□ -1.89
CTCFP49711 AC124864.2-201ENST00000624736 186 ntBASIC3.24□□□□□ -1.89
CTCFP49711 AL157786.1-207ENST00000627771 695 ntBASIC3.24□□□□□ -1.89
CTCFP49711 AL353651.2-201ENST00000635706 559 ntTSL 5 BASIC3.24□□□□□ -1.89
CTCFP49711 Z99571.1-201ENST00000636677 394 ntBASIC3.24□□□□□ -1.89
CTCFP49711 AC099654.12-201ENST00000639868 649 ntBASIC3.24□□□□□ -1.89
CTCFP49711 TFEC-202ENST00000320239 6605 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
CTCFP49711 AC103993.1-201ENST00000521500 1584 ntTSL 5 BASIC3.24□□□□□ -1.89
CTCFP49711 ZNF66-201ENST00000344519 1745 ntAPPRIS P1 TSL 3 BASIC3.24□□□□□ -1.89
CTCFP49711 AC002543.1-201ENST00000299783 1954 ntBASIC3.23□□□□□ -1.89
CTCFP49711 ZNF680P1-201ENST00000436625 1469 ntBASIC3.23□□□□□ -1.89
CTCFP49711 PCDH11Y-201ENST00000215473 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC3.23□□□□□ -1.89
CTCFP49711 ECT2-211ENST00000441497 2825 ntAPPRIS P2 TSL 1 (best) BASIC3.23□□□□□ -1.89
CTCFP49711 SNORD115-7-201ENST00000365306 82 ntBASIC3.23□□□□□ -1.89
CTCFP49711 RNU4-48P-201ENST00000365559 182 ntBASIC3.23□□□□□ -1.89
CTCFP49711 Y_RNA.576-201ENST00000384781 102 ntBASIC3.23□□□□□ -1.89
CTCFP49711 MIR489-201ENST00000384923 84 ntBASIC3.23□□□□□ -1.89
CTCFP49711 AC068050.1-201ENST00000394891 380 ntBASIC3.23□□□□□ -1.89
CTCFP49711 Y_RNA.595-201ENST00000410403 105 ntBASIC3.23□□□□□ -1.89
CTCFP49711 TTTY3-201ENST00000417334 344 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
CTCFP49711 AC010967.2-201ENST00000418451 333 ntTSL 2 BASIC3.23□□□□□ -1.89
CTCFP49711 AL591704.1-201ENST00000432574 275 ntBASIC3.23□□□□□ -1.89
CTCFP49711 RPL36AP53-201ENST00000432891 316 ntBASIC3.23□□□□□ -1.89
CTCFP49711 AC093579.1-201ENST00000439455 352 ntTSL 2 BASIC3.23□□□□□ -1.89
CTCFP49711 LINC01691-201ENST00000450546 426 ntTSL 5 BASIC3.23□□□□□ -1.89
CTCFP49711 ANKAR-209ENST00000520309 4410 ntAPPRIS P1 TSL 5 BASIC3.23□□□□□ -1.89
CTCFP49711 HTN3-202ENST00000526767 578 ntAPPRIS P2 TSL 1 (best) BASIC3.23□□□□□ -1.89
CTCFP49711 AC084851.1-201ENST00000529105 249 ntBASIC3.23□□□□□ -1.89
CTCFP49711 OR5AL2P-201ENST00000532185 920 ntBASIC3.23□□□□□ -1.89
CTCFP49711 OR5BN1P-201ENST00000532955 829 ntBASIC3.23□□□□□ -1.89
CTCFP49711 MAPK1-204ENST00000544786 951 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
CTCFP49711 AL355076.2-202ENST00000553754 574 ntTSL 4 BASIC3.23□□□□□ -1.89
CTCFP49711 AL391261.3-201ENST00000557194 520 ntBASIC3.23□□□□□ -1.89
CTCFP49711 AC002115.1-201ENST00000589603 568 ntTSL 4 BASIC3.23□□□□□ -1.89
CTCFP49711 AC090227.2-201ENST00000591105 340 ntTSL 5 BASIC3.23□□□□□ -1.89
CTCFP49711 AP000942.3-201ENST00000603702 160 ntBASIC3.23□□□□□ -1.89
CTCFP49711 AC017083.3-201ENST00000609955 700 ntBASIC3.23□□□□□ -1.89
CTCFP49711 AL359547.2-201ENST00000615810 418 ntBASIC3.23□□□□□ -1.89
CTCFP49711 AL158209.2-201ENST00000619266 216 ntBASIC3.23□□□□□ -1.89
CTCFP49711 AC098679.4-201ENST00000624241 654 ntBASIC3.23□□□□□ -1.89
CTCFP49711 TTTY3B-201ENST00000631331 344 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
CTCFP49711 MIR6863-201ENST00000636112 90 ntBASIC3.23□□□□□ -1.89
CTCFP49711 U2.21-201ENST00000637295 81 ntBASIC3.23□□□□□ -1.89
CTCFP49711 AC138915.1-201ENST00000565427 1685 ntBASIC3.23□□□□□ -1.89
CTCFP49711 LIPI-203ENST00000536861 1529 ntAPPRIS ALT2 TSL 1 (best) BASIC3.23□□□□□ -1.89
CTCFP49711 CPD-202ENST00000543464 4007 ntTSL 2 BASIC3.22□□□□□ -1.89
CTCFP49711 RNU1-105P-201ENST00000363470 161 ntBASIC3.22□□□□□ -1.89
CTCFP49711 SNORA4.3-201ENST00000365564 137 ntBASIC3.22□□□□□ -1.89
CTCFP49711 RNU6-606P-201ENST00000384721 111 ntBASIC3.22□□□□□ -1.89
CTCFP49711 MIR27B-201ENST00000385129 97 ntBASIC3.22□□□□□ -1.89
CTCFP49711 MIR888-201ENST00000401186 77 ntBASIC3.22□□□□□ -1.89
CTCFP49711 AC080125.1-201ENST00000414888 684 ntBASIC3.22□□□□□ -1.89
CTCFP49711 AL031779.1-201ENST00000415663 330 ntBASIC3.22□□□□□ -1.89
CTCFP49711 AL359195.1-201ENST00000416657 339 ntTSL 3 BASIC3.22□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 125.9 ms