Protein–RNA interactions for Protein: Q9UKF6

CPSF3, Cleavage and polyadenylation specificity factor subunit 3, humanhuman

Known RBP Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3Q9UKF6 NACAP2-201ENST00000318548 624 ntBASIC2.81□□□□□ -1.96
CPSF3Q9UKF6 MT-CYB-201ENST00000361789 1141 ntAPPRIS P1 BASIC2.81□□□□□ -1.96
CPSF3Q9UKF6 SNORD62.1-201ENST00000362541 86 ntBASIC2.81□□□□□ -1.96
CPSF3Q9UKF6 Y_RNA.159-201ENST00000363674 87 ntBASIC2.81□□□□□ -1.96
CPSF3Q9UKF6 OR5H15-201ENST00000383696 930 ntBASIC2.81□□□□□ -1.96
CPSF3Q9UKF6 SNORA75B-201ENST00000384053 137 ntBASIC2.81□□□□□ -1.96
CPSF3Q9UKF6 Y_RNA.582-201ENST00000391023 95 ntBASIC2.81□□□□□ -1.96
CPSF3Q9UKF6 CISD1P1-201ENST00000393907 327 ntBASIC2.81□□□□□ -1.96
CPSF3Q9UKF6 FGFR1OP2P1-201ENST00000395943 500 ntBASIC2.81□□□□□ -1.96
CPSF3Q9UKF6 RPS4XP8-201ENST00000402039 771 ntBASIC2.81□□□□□ -1.96
CPSF3Q9UKF6 RNU2-66P-201ENST00000410650 161 ntBASIC2.81□□□□□ -1.96
CPSF3Q9UKF6 AP000473.1-201ENST00000413645 550 ntTSL 3 BASIC2.81□□□□□ -1.96
CPSF3Q9UKF6 USP9YP20-201ENST00000419224 558 ntBASIC2.81□□□□□ -1.96
CPSF3Q9UKF6 AL353729.1-201ENST00000425044 720 ntBASIC2.81□□□□□ -1.96
CPSF3Q9UKF6 AL353612.1-201ENST00000428769 465 ntTSL 3 BASIC2.81□□□□□ -1.96
CPSF3Q9UKF6 DLGAP5P1-201ENST00000430307 464 ntBASIC2.81□□□□□ -1.96
CPSF3Q9UKF6 AC009296.1-201ENST00000443146 155 ntBASIC2.81□□□□□ -1.96
CPSF3Q9UKF6 CACYBPP2-201ENST00000453625 678 ntBASIC2.81□□□□□ -1.96
CPSF3Q9UKF6 AC092666.1-201ENST00000492054 573 ntTSL 4 BASIC2.81□□□□□ -1.96
CPSF3Q9UKF6 AC026801.1-201ENST00000497178 464 ntBASIC2.81□□□□□ -1.96
CPSF3Q9UKF6 AC098591.2-201ENST00000510152 315 ntBASIC2.81□□□□□ -1.96
CPSF3Q9UKF6 AP003730.2-202ENST00000527281 774 ntTSL 3 BASIC2.81□□□□□ -1.96
CPSF3Q9UKF6 ADI1P3-201ENST00000549509 470 ntBASIC2.81□□□□□ -1.96
CPSF3Q9UKF6 SUB1P2-201ENST00000556401 297 ntBASIC2.81□□□□□ -1.96
CPSF3Q9UKF6 AL157871.3-201ENST00000557231 293 ntBASIC2.81□□□□□ -1.96
CPSF3Q9UKF6 IGKV1-33-202ENST00000558152 324 ntAPPRIS ALT2 TSL 5 BASIC2.81□□□□□ -1.96
CPSF3Q9UKF6 AC011933.3-201ENST00000578226 372 ntTSL 1 (best) BASIC2.81□□□□□ -1.96
CPSF3Q9UKF6 AC103987.3-201ENST00000582071 292 ntBASIC2.81□□□□□ -1.96
CPSF3Q9UKF6 AC012313.1-202ENST00000597309 423 ntTSL 3 BASIC2.81□□□□□ -1.96
CPSF3Q9UKF6 AC091805.2-201ENST00000603848 235 ntBASIC2.81□□□□□ -1.96
CPSF3Q9UKF6 AC126118.1-201ENST00000607744 628 ntBASIC2.81□□□□□ -1.96
CPSF3Q9UKF6 AL359962.2-201ENST00000610044 303 ntTSL 5 BASIC2.81□□□□□ -1.96
CPSF3Q9UKF6 IGKV1D-33-202ENST00000611734 324 ntAPPRIS ALT2 TSL 5 BASIC2.81□□□□□ -1.96
CPSF3Q9UKF6 Z99129.1-201ENST00000612510 255 ntBASIC2.81□□□□□ -1.96
CPSF3Q9UKF6 AC009161.2-201ENST00000624626 138 ntBASIC2.81□□□□□ -1.96
CPSF3Q9UKF6 MTND4P35-201ENST00000604257 1375 ntBASIC2.81□□□□□ -1.96
CPSF3Q9UKF6 ACTR6-212ENST00000552376 1659 ntTSL 5 BASIC2.81□□□□□ -1.96
CPSF3Q9UKF6 MYSM1-208ENST00000622766 6020 ntTSL 1 (best) BASIC2.81□□□□□ -1.96
CPSF3Q9UKF6 LINC01592-202ENST00000518540 2367 ntTSL 2 BASIC2.8□□□□□ -1.96
CPSF3Q9UKF6 PSG8-202ENST00000401467 1686 ntTSL 5 BASIC2.8□□□□□ -1.96
CPSF3Q9UKF6 MTND5P17-201ENST00000418405 1603 ntBASIC2.8□□□□□ -1.96
CPSF3Q9UKF6 PKIB-201ENST00000258014 1595 ntTSL 2 BASIC2.8□□□□□ -1.96
CPSF3Q9UKF6 RNA5SP68-201ENST00000363885 119 ntBASIC2.8□□□□□ -1.96
CPSF3Q9UKF6 SNORA62.1-201ENST00000364287 154 ntBASIC2.8□□□□□ -1.96
CPSF3Q9UKF6 RNU1-100P-201ENST00000365255 165 ntBASIC2.8□□□□□ -1.96
CPSF3Q9UKF6 RNU6-658P-201ENST00000384606 106 ntBASIC2.8□□□□□ -1.96
CPSF3Q9UKF6 Y_RNA.576-201ENST00000384781 102 ntBASIC2.8□□□□□ -1.96
CPSF3Q9UKF6 MIR301A-201ENST00000385261 86 ntBASIC2.8□□□□□ -1.96
CPSF3Q9UKF6 RNU6-750P-201ENST00000390946 107 ntBASIC2.8□□□□□ -1.96
CPSF3Q9UKF6 UBE2V1P2-201ENST00000397758 440 ntBASIC2.8□□□□□ -1.96
CPSF3Q9UKF6 RNU2-49P-201ENST00000410666 184 ntBASIC2.8□□□□□ -1.96
CPSF3Q9UKF6 RNU2-16P-201ENST00000410712 136 ntBASIC2.8□□□□□ -1.96
CPSF3Q9UKF6 AC026355.1-201ENST00000423466 587 ntTSL 5 BASIC2.8□□□□□ -1.96
CPSF3Q9UKF6 AL160275.3-201ENST00000423876 471 ntBASIC2.8□□□□□ -1.96
CPSF3Q9UKF6 AC010975.2-201ENST00000427781 588 ntBASIC2.8□□□□□ -1.96
CPSF3Q9UKF6 AC079799.1-201ENST00000430696 331 ntTSL 3 BASIC2.8□□□□□ -1.96
CPSF3Q9UKF6 KRTAP19-11P-201ENST00000439851 104 ntBASIC2.8□□□□□ -1.96
CPSF3Q9UKF6 AC098831.1-201ENST00000440661 216 ntBASIC2.8□□□□□ -1.96
CPSF3Q9UKF6 LINC01162-201ENST00000447262 447 ntTSL 5 BASIC2.8□□□□□ -1.96
CPSF3Q9UKF6 MTATP6P7-201ENST00000453315 681 ntBASIC2.8□□□□□ -1.96
CPSF3Q9UKF6 SNORA59A-201ENST00000459326 152 ntBASIC2.8□□□□□ -1.96
CPSF3Q9UKF6 AC079340.1-201ENST00000504799 552 ntTSL 4 BASIC2.8□□□□□ -1.96
CPSF3Q9UKF6 MTND2P33-201ENST00000506452 1031 ntBASIC2.8□□□□□ -1.96
CPSF3Q9UKF6 LINC01333-201ENST00000508083 724 ntTSL 1 (best) BASIC2.8□□□□□ -1.96
CPSF3Q9UKF6 AC008700.1-202ENST00000513657 468 ntTSL 5 BASIC2.8□□□□□ -1.96
CPSF3Q9UKF6 RNU6ATAC13P-201ENST00000516152 131 ntBASIC2.8□□□□□ -1.96
CPSF3Q9UKF6 AC025755.1-201ENST00000521306 278 ntBASIC2.8□□□□□ -1.96
CPSF3Q9UKF6 AC113145.1-201ENST00000522408 412 ntTSL 5 BASIC2.8□□□□□ -1.96
CPSF3Q9UKF6 SPINK7-205ENST00000523535 299 ntTSL 2 BASIC2.8□□□□□ -1.96
CPSF3Q9UKF6 COX6CP5-201ENST00000527162 228 ntBASIC2.8□□□□□ -1.96
CPSF3Q9UKF6 OR5AL2P-201ENST00000532185 920 ntBASIC2.8□□□□□ -1.96
CPSF3Q9UKF6 AC091047.1-201ENST00000533344 552 ntTSL 4 BASIC2.8□□□□□ -1.96
CPSF3Q9UKF6 AC007368.1-201ENST00000536422 974 ntTSL 5 BASIC2.8□□□□□ -1.96
CPSF3Q9UKF6 NACAP3-201ENST00000552100 481 ntBASIC2.8□□□□□ -1.96
CPSF3Q9UKF6 AGGF1P4-201ENST00000568249 801 ntBASIC2.8□□□□□ -1.96
CPSF3Q9UKF6 AL355598.1-201ENST00000604169 202 ntBASIC2.8□□□□□ -1.96
CPSF3Q9UKF6 NDUFA8P1-201ENST00000605525 367 ntBASIC2.8□□□□□ -1.96
CPSF3Q9UKF6 CERS6-AS1-209ENST00000609766 642 ntTSL 5 BASIC2.8□□□□□ -1.96
CPSF3Q9UKF6 SRP54-214ENST00000630962 162 ntTSL 5 BASIC2.8□□□□□ -1.96
CPSF3Q9UKF6 AC110491.1-201ENST00000562191 2010 ntBASIC2.8□□□□□ -1.96
CPSF3Q9UKF6 ZMYM1-203ENST00000373330 4203 ntAPPRIS P1 TSL 1 (best) BASIC2.79□□□□□ -1.96
CPSF3Q9UKF6 TPTE2-203ENST00000390680 1558 ntTSL 1 (best) BASIC2.79□□□□□ -1.96
CPSF3Q9UKF6 HSFY1-202ENST00000309834 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC2.79□□□□□ -1.96
CPSF3Q9UKF6 HSFY2-202ENST00000344884 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC2.79□□□□□ -1.96
CPSF3Q9UKF6 SNORD115-7-201ENST00000365306 82 ntBASIC2.79□□□□□ -1.96
CPSF3Q9UKF6 AKAP14-203ENST00000371425 793 ntAPPRIS ALT2 TSL 5 BASIC2.79□□□□□ -1.96
CPSF3Q9UKF6 MIR454-201ENST00000390180 115 ntBASIC2.79□□□□□ -1.96
CPSF3Q9UKF6 EIF4EBP2P3-201ENST00000403144 334 ntBASIC2.79□□□□□ -1.96
CPSF3Q9UKF6 RNU6-1025P-201ENST00000410629 104 ntBASIC2.79□□□□□ -1.96
CPSF3Q9UKF6 AC003092.1-201ENST00000415536 639 ntTSL 3 BASIC2.79□□□□□ -1.96
CPSF3Q9UKF6 AL356134.1-201ENST00000419815 373 ntTSL 3 BASIC2.79□□□□□ -1.96
CPSF3Q9UKF6 LINC00368-201ENST00000422994 650 ntTSL 1 (best) BASIC2.79□□□□□ -1.96
CPSF3Q9UKF6 AL138775.1-201ENST00000429539 575 ntTSL 1 (best) BASIC2.79□□□□□ -1.96
CPSF3Q9UKF6 MYL8P-204ENST00000431574 518 ntBASIC2.79□□□□□ -1.96
CPSF3Q9UKF6 AC093083.1-201ENST00000438633 347 ntTSL 3 BASIC2.79□□□□□ -1.96
CPSF3Q9UKF6 RPS3AP17-201ENST00000472594 777 ntBASIC2.79□□□□□ -1.96
CPSF3Q9UKF6 RPS15AP34-201ENST00000487776 387 ntBASIC2.79□□□□□ -1.96
CPSF3Q9UKF6 AC023194.1-201ENST00000493084 308 ntBASIC2.79□□□□□ -1.96
CPSF3Q9UKF6 AC108078.1-201ENST00000508073 725 ntBASIC2.79□□□□□ -1.96
CPSF3Q9UKF6 SNORA31.18-201ENST00000517043 134 ntBASIC2.79□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 163.9 ms