Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 AL160275.3-201ENST00000423876 471 ntBASIC3.42□□□□□ -1.86
CHMP4AQ9BY43 AC078845.1-202ENST00000435996 733 ntTSL 3 BASIC3.42□□□□□ -1.86
CHMP4AQ9BY43 KRTAP19-11P-201ENST00000439851 104 ntBASIC3.42□□□□□ -1.86
CHMP4AQ9BY43 UBE2D3P4-201ENST00000441973 436 ntBASIC3.42□□□□□ -1.86
CHMP4AQ9BY43 AC018693.1-201ENST00000442829 550 ntTSL 4 BASIC3.42□□□□□ -1.86
CHMP4AQ9BY43 AL109933.2-201ENST00000452651 260 ntBASIC3.42□□□□□ -1.86
CHMP4AQ9BY43 AC090525.1-201ENST00000479116 478 ntBASIC3.42□□□□□ -1.86
CHMP4AQ9BY43 MEPE-206ENST00000511670 550 ntTSL 4 BASIC3.42□□□□□ -1.86
CHMP4AQ9BY43 MYL12BP1-201ENST00000569826 507 ntBASIC3.42□□□□□ -1.86
CHMP4AQ9BY43 MTCO3P13-201ENST00000577757 781 ntBASIC3.42□□□□□ -1.86
CHMP4AQ9BY43 AC002115.1-201ENST00000589603 568 ntTSL 4 BASIC3.42□□□□□ -1.86
CHMP4AQ9BY43 AC012119.1-201ENST00000603184 222 ntBASIC3.42□□□□□ -1.86
CHMP4AQ9BY43 AC091304.6-201ENST00000619761 202 ntBASIC3.42□□□□□ -1.86
CHMP4AQ9BY43 ZBED5-202ENST00000432999 2741 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
CHMP4AQ9BY43 TAB2-201ENST00000367456 4553 ntAPPRIS P1 TSL 5 BASIC3.41□□□□□ -1.86
CHMP4AQ9BY43 KLRF1-202ENST00000354855 838 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
CHMP4AQ9BY43 RNU6-641P-201ENST00000384006 107 ntBASIC3.41□□□□□ -1.86
CHMP4AQ9BY43 Y_RNA.560-201ENST00000384689 102 ntBASIC3.41□□□□□ -1.86
CHMP4AQ9BY43 RAP1BP3-201ENST00000407180 549 ntBASIC3.41□□□□□ -1.86
CHMP4AQ9BY43 RPLP0P7-201ENST00000416050 667 ntBASIC3.41□□□□□ -1.86
CHMP4AQ9BY43 AL356583.2-201ENST00000426536 280 ntBASIC3.41□□□□□ -1.86
CHMP4AQ9BY43 AC064852.1-201ENST00000427571 851 ntTSL 3 BASIC3.41□□□□□ -1.86
CHMP4AQ9BY43 UPP2-IT1-201ENST00000439185 357 ntTSL 3 BASIC3.41□□□□□ -1.86
CHMP4AQ9BY43 CSN1S2AP-201ENST00000451783 779 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
CHMP4AQ9BY43 KLF3P2-201ENST00000465138 268 ntBASIC3.41□□□□□ -1.86
CHMP4AQ9BY43 Y_RNA.717-201ENST00000517106 92 ntBASIC3.41□□□□□ -1.86
CHMP4AQ9BY43 SKP1-203ENST00000517625 876 ntAPPRIS P4 TSL 3 BASIC3.41□□□□□ -1.86
CHMP4AQ9BY43 AC091996.1-201ENST00000522274 600 ntTSL 3 BASIC3.41□□□□□ -1.86
CHMP4AQ9BY43 AP002884.4-201ENST00000527589 594 ntTSL 3 BASIC3.41□□□□□ -1.86
CHMP4AQ9BY43 AC124657.1-201ENST00000527819 429 ntTSL 3 BASIC3.41□□□□□ -1.86
CHMP4AQ9BY43 AP000889.1-201ENST00000530968 660 ntBASIC3.41□□□□□ -1.86
CHMP4AQ9BY43 OR5B19P-201ENST00000531766 928 ntBASIC3.41□□□□□ -1.86
CHMP4AQ9BY43 CCDC7-208ENST00000537047 657 ntAPPRIS ALT2 TSL 1 (best) BASIC3.41□□□□□ -1.86
CHMP4AQ9BY43 CCDC7-209ENST00000539197 581 ntAPPRIS ALT2 TSL 1 (best) BASIC3.41□□□□□ -1.86
CHMP4AQ9BY43 MIR3126-201ENST00000577443 74 ntBASIC3.41□□□□□ -1.86
CHMP4AQ9BY43 MIR5692A1-201ENST00000580523 69 ntBASIC3.41□□□□□ -1.86
CHMP4AQ9BY43 AL022161.1-201ENST00000604390 213 ntBASIC3.41□□□□□ -1.86
CHMP4AQ9BY43 AC018638.7-201ENST00000605836 1114 ntBASIC3.41□□□□□ -1.86
CHMP4AQ9BY43 AC005046.1-201ENST00000608515 625 ntBASIC3.41□□□□□ -1.86
CHMP4AQ9BY43 ZNRD1-AS1_2.5-201ENST00000614729 76 ntBASIC3.41□□□□□ -1.86
CHMP4AQ9BY43 AC009233.1-201ENST00000616477 371 ntBASIC3.41□□□□□ -1.86
CHMP4AQ9BY43 OGN-201ENST00000262551 2971 ntAPPRIS P1 TSL 5 BASIC3.41□□□□□ -1.86
CHMP4AQ9BY43 TLK1-206ENST00000434911 2156 ntTSL 2 BASIC3.41□□□□□ -1.86
CHMP4AQ9BY43 PCDH11Y-201ENST00000215473 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC3.4□□□□□ -1.86
CHMP4AQ9BY43 RNU6-858P-201ENST00000362436 107 ntBASIC3.4□□□□□ -1.87
CHMP4AQ9BY43 RNU6-529P-201ENST00000363383 104 ntBASIC3.4□□□□□ -1.87
CHMP4AQ9BY43 SNORA3A-201ENST00000364113 130 ntBASIC3.4□□□□□ -1.87
CHMP4AQ9BY43 RNU1-148P-201ENST00000384472 162 ntBASIC3.4□□□□□ -1.87
CHMP4AQ9BY43 RNU1-57P-201ENST00000384491 166 ntBASIC3.4□□□□□ -1.87
CHMP4AQ9BY43 RPS4XP8-201ENST00000402039 771 ntBASIC3.4□□□□□ -1.87
CHMP4AQ9BY43 CIR1P3-201ENST00000405137 479 ntBASIC3.4□□□□□ -1.87
CHMP4AQ9BY43 FTH1P15-201ENST00000406984 280 ntBASIC3.4□□□□□ -1.87
CHMP4AQ9BY43 SNORD23.1-201ENST00000408212 104 ntBASIC3.4□□□□□ -1.87
CHMP4AQ9BY43 AC010974.1-201ENST00000450509 374 ntTSL 3 BASIC3.4□□□□□ -1.87
CHMP4AQ9BY43 LINC00430-201ENST00000457672 597 ntTSL 3 BASIC3.4□□□□□ -1.87
CHMP4AQ9BY43 RNU6-232P-201ENST00000517144 64 ntBASIC3.4□□□□□ -1.87
CHMP4AQ9BY43 AC105999.1-201ENST00000518722 473 ntTSL 3 BASIC3.4□□□□□ -1.87
CHMP4AQ9BY43 RPL7P20-201ENST00000520308 745 ntBASIC3.4□□□□□ -1.87
CHMP4AQ9BY43 AL358333.2-201ENST00000556834 529 ntTSL 5 BASIC3.4□□□□□ -1.87
CHMP4AQ9BY43 AC087463.2-201ENST00000565943 472 ntTSL 3 BASIC3.4□□□□□ -1.87
CHMP4AQ9BY43 LINC01290-201ENST00000566787 502 ntTSL 2 BASIC3.4□□□□□ -1.87
CHMP4AQ9BY43 AC105137.2-201ENST00000569073 466 ntBASIC3.4□□□□□ -1.87
CHMP4AQ9BY43 AC073410.2-201ENST00000603240 332 ntBASIC3.4□□□□□ -1.87
CHMP4AQ9BY43 AC092142.2-201ENST00000614642 354 ntTSL 3 BASIC3.4□□□□□ -1.87
CHMP4AQ9BY43 AP000770.2-201ENST00000623694 100 ntBASIC3.4□□□□□ -1.87
CHMP4AQ9BY43 AC099654.13-201ENST00000639774 207 ntBASIC3.4□□□□□ -1.87
CHMP4AQ9BY43 NEBL-202ENST00000377122 9216 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
CHMP4AQ9BY43 AASDH-207ENST00000513376 3241 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
CHMP4AQ9BY43 ZNF470-202ENST00000391709 6601 ntAPPRIS P1 TSL 5 BASIC3.39□□□□□ -1.87
CHMP4AQ9BY43 ZNF451-208ENST00000491832 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC3.39□□□□□ -1.87
CHMP4AQ9BY43 TEX43-201ENST00000357147 464 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
CHMP4AQ9BY43 RNU6-72P-201ENST00000384285 79 ntBASIC3.39□□□□□ -1.87
CHMP4AQ9BY43 Y_RNA.500-201ENST00000384466 111 ntBASIC3.39□□□□□ -1.87
CHMP4AQ9BY43 AL031577.2-201ENST00000404133 280 ntBASIC3.39□□□□□ -1.87
CHMP4AQ9BY43 ARL5AP4-201ENST00000430731 512 ntBASIC3.39□□□□□ -1.87
CHMP4AQ9BY43 AL590399.3-201ENST00000438072 543 ntTSL 5 BASIC3.39□□□□□ -1.87
CHMP4AQ9BY43 U91324.1-201ENST00000442864 447 ntTSL 5 BASIC3.39□□□□□ -1.87
CHMP4AQ9BY43 AL451164.2-201ENST00000445932 597 ntTSL 2 BASIC3.39□□□□□ -1.87
CHMP4AQ9BY43 AC073901.1-201ENST00000462471 408 ntBASIC3.39□□□□□ -1.87
CHMP4AQ9BY43 AC008571.1-201ENST00000467232 300 ntBASIC3.39□□□□□ -1.87
CHMP4AQ9BY43 BZW1P2-201ENST00000473537 826 ntBASIC3.39□□□□□ -1.87
CHMP4AQ9BY43 AC008869.1-201ENST00000510938 442 ntTSL 2 BASIC3.39□□□□□ -1.87
CHMP4AQ9BY43 RNA5SP137-201ENST00000516833 135 ntBASIC3.39□□□□□ -1.87
CHMP4AQ9BY43 IGLV3-17-201ENST00000519099 244 ntBASIC3.39□□□□□ -1.87
CHMP4AQ9BY43 RANP3-201ENST00000530970 276 ntBASIC3.39□□□□□ -1.87
CHMP4AQ9BY43 AC093012.1-201ENST00000552999 446 ntTSL 3 BASIC3.39□□□□□ -1.87
CHMP4AQ9BY43 MIR4513-201ENST00000581077 86 ntBASIC3.39□□□□□ -1.87
CHMP4AQ9BY43 AP005062.1-201ENST00000581502 607 ntTSL 3 BASIC3.39□□□□□ -1.87
CHMP4AQ9BY43 AC024610.1-201ENST00000582685 323 ntTSL 3 BASIC3.39□□□□□ -1.87
CHMP4AQ9BY43 AC012313.1-202ENST00000597309 423 ntTSL 3 BASIC3.39□□□□□ -1.87
CHMP4AQ9BY43 AL158032.1-201ENST00000605401 106 ntBASIC3.39□□□□□ -1.87
CHMP4AQ9BY43 DLEU2_6.1-201ENST00000610536 112 ntBASIC3.39□□□□□ -1.87
CHMP4AQ9BY43 AC122133.1-201ENST00000613964 233 ntBASIC3.39□□□□□ -1.87
CHMP4AQ9BY43 CYLC2-201ENST00000374798 2171 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
CHMP4AQ9BY43 ATP8A2P3-201ENST00000426792 1536 ntBASIC3.39□□□□□ -1.87
CHMP4AQ9BY43 AC138623.1-201ENST00000418060 216 ntBASIC3.38□□□□□ -1.87
CHMP4AQ9BY43 AL135908.1-201ENST00000431394 446 ntTSL 3 BASIC3.38□□□□□ -1.87
CHMP4AQ9BY43 LINC00571-203ENST00000454060 525 ntTSL 3 BASIC3.38□□□□□ -1.87
CHMP4AQ9BY43 AP000705.1-201ENST00000454567 350 ntBASIC3.38□□□□□ -1.87
CHMP4AQ9BY43 AC109486.1-201ENST00000486833 374 ntBASIC3.38□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 150.2 ms