Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 RNU6-1097P-201ENST00000363586 107 ntBASIC2.77□□□□□ -1.97
USP28Q96RU2 Y_RNA.248-201ENST00000364501 109 ntBASIC2.77□□□□□ -1.97
USP28Q96RU2 RNU6-483P-201ENST00000384088 108 ntBASIC2.77□□□□□ -1.97
USP28Q96RU2 Y_RNA.450-201ENST00000384198 113 ntBASIC2.77□□□□□ -1.97
USP28Q96RU2 SNORA24.1-201ENST00000384401 135 ntBASIC2.77□□□□□ -1.97
USP28Q96RU2 SNORA41-201ENST00000384675 132 ntBASIC2.77□□□□□ -1.97
USP28Q96RU2 RNU6-1158P-201ENST00000391167 107 ntBASIC2.77□□□□□ -1.97
USP28Q96RU2 HMGN2P35-201ENST00000412164 270 ntBASIC2.77□□□□□ -1.97
USP28Q96RU2 LINC00301-202ENST00000412599 772 ntTSL 1 (best) BASIC2.77□□□□□ -1.97
USP28Q96RU2 AC092809.3-201ENST00000415453 231 ntBASIC2.77□□□□□ -1.97
USP28Q96RU2 MTND1P23-201ENST00000416931 372 ntBASIC2.77□□□□□ -1.97
USP28Q96RU2 COTL1P1-201ENST00000422309 375 ntBASIC2.77□□□□□ -1.97
USP28Q96RU2 LINC00368-201ENST00000422994 650 ntTSL 1 (best) BASIC2.77□□□□□ -1.97
USP28Q96RU2 MTCO3P30-201ENST00000426425 670 ntBASIC2.77□□□□□ -1.97
USP28Q96RU2 AC063976.3-201ENST00000426849 329 ntBASIC2.77□□□□□ -1.97
USP28Q96RU2 AL589986.2-201ENST00000429352 397 ntTSL 2 BASIC2.77□□□□□ -1.97
USP28Q96RU2 USP12PX-201ENST00000432383 1057 ntBASIC2.77□□□□□ -1.97
USP28Q96RU2 AL606489.2-201ENST00000433886 234 ntBASIC2.77□□□□□ -1.97
USP28Q96RU2 AL596276.1-201ENST00000434465 418 ntBASIC2.77□□□□□ -1.97
USP28Q96RU2 RPL7P54-201ENST00000438336 674 ntBASIC2.77□□□□□ -1.97
USP28Q96RU2 BNIP3P2-201ENST00000441221 577 ntBASIC2.77□□□□□ -1.97
USP28Q96RU2 AC009237.8-201ENST00000445492 379 ntBASIC2.77□□□□□ -1.97
USP28Q96RU2 AL390961.1-201ENST00000446557 319 ntTSL 2 BASIC2.77□□□□□ -1.97
USP28Q96RU2 AC020550.1-201ENST00000447385 163 ntBASIC2.77□□□□□ -1.97
USP28Q96RU2 AC073326.1-201ENST00000451832 557 ntTSL 3 BASIC2.77□□□□□ -1.97
USP28Q96RU2 AC087588.1-201ENST00000462203 316 ntBASIC2.77□□□□□ -1.97
USP28Q96RU2 MCCC1-AS1-201ENST00000471731 765 ntTSL 5 BASIC2.77□□□□□ -1.97
USP28Q96RU2 PLCH1-AS2-201ENST00000472913 408 ntTSL 2 BASIC2.77□□□□□ -1.97
USP28Q96RU2 RPL23AP45-201ENST00000476406 468 ntBASIC2.77□□□□□ -1.97
USP28Q96RU2 AC096576.1-201ENST00000489014 359 ntBASIC2.77□□□□□ -1.97
USP28Q96RU2 TTC39CP1-201ENST00000512513 755 ntBASIC2.77□□□□□ -1.97
USP28Q96RU2 RNA5SP356-201ENST00000515972 94 ntBASIC2.77□□□□□ -1.97
USP28Q96RU2 RNU6-1256P-201ENST00000516539 103 ntBASIC2.77□□□□□ -1.97
USP28Q96RU2 Y_RNA.693-201ENST00000516641 110 ntBASIC2.77□□□□□ -1.97
USP28Q96RU2 NRON-201ENST00000517270 370 ntBASIC2.77□□□□□ -1.97
USP28Q96RU2 AC113145.1-201ENST00000522408 412 ntTSL 5 BASIC2.77□□□□□ -1.97
USP28Q96RU2 OR5AQ1P-201ENST00000527596 927 ntBASIC2.77□□□□□ -1.97
USP28Q96RU2 AC093012.1-202ENST00000549403 582 ntBASIC2.77□□□□□ -1.97
USP28Q96RU2 AL512360.1-201ENST00000555346 234 ntBASIC2.77□□□□□ -1.97
USP28Q96RU2 AC092325.1-201ENST00000566449 554 ntBASIC2.77□□□□□ -1.97
USP28Q96RU2 RPL23AP84-201ENST00000571193 464 ntBASIC2.77□□□□□ -1.97
USP28Q96RU2 AC008752.3-201ENST00000588113 712 ntBASIC2.77□□□□□ -1.97
USP28Q96RU2 AC012507.3-201ENST00000603556 477 ntBASIC2.77□□□□□ -1.97
USP28Q96RU2 AC013553.2-201ENST00000604244 589 ntBASIC2.77□□□□□ -1.97
USP28Q96RU2 AC007363.1-201ENST00000604736 620 ntBASIC2.77□□□□□ -1.97
USP28Q96RU2 AC093788.1-201ENST00000609356 927 ntBASIC2.77□□□□□ -1.97
USP28Q96RU2 MIR3688-2-201ENST00000636963 87 ntBASIC2.77□□□□□ -1.97
USP28Q96RU2 IGSF11-AS1-201ENST00000477009 1604 ntTSL 2 BASIC2.77□□□□□ -1.97
USP28Q96RU2 MS4A14-202ENST00000395001 3401 ntTSL 5 BASIC2.77□□□□□ -1.97
USP28Q96RU2 NEB-203ENST00000397345 26202 ntAPPRIS ALT2 TSL 5 BASIC2.77□□□□□ -1.97
USP28Q96RU2 NEB-209ENST00000427231 26202 ntAPPRIS ALT2 TSL 5 BASIC2.77□□□□□ -1.97
USP28Q96RU2 PLS1-201ENST00000337777 3755 ntAPPRIS P1 TSL 1 (best) BASIC2.77□□□□□ -1.97
USP28Q96RU2 SENP7-204ENST00000394085 1483 ntTSL 1 (best) BASIC2.77□□□□□ -1.97
USP28Q96RU2 AKAP9-203ENST00000359028 12247 ntAPPRIS ALT2 TSL 5 BASIC2.76□□□□□ -1.97
USP28Q96RU2 C5orf46-201ENST00000318315 506 ntAPPRIS P2 TSL 1 (best) BASIC2.76□□□□□ -1.97
USP28Q96RU2 SNORA62.1-201ENST00000364287 154 ntBASIC2.76□□□□□ -1.97
USP28Q96RU2 RNU6-1283P-201ENST00000365314 105 ntBASIC2.76□□□□□ -1.97
USP28Q96RU2 RNU6-946P-201ENST00000383878 107 ntBASIC2.76□□□□□ -1.97
USP28Q96RU2 TRAV41-201ENST00000390468 336 ntAPPRIS P1 BASIC2.76□□□□□ -1.97
USP28Q96RU2 RNU2-39P-201ENST00000410604 198 ntBASIC2.76□□□□□ -1.97
USP28Q96RU2 AL451054.2-201ENST00000420896 202 ntBASIC2.76□□□□□ -1.97
USP28Q96RU2 RAC1P6-201ENST00000423911 575 ntBASIC2.76□□□□□ -1.97
USP28Q96RU2 UBE2E2-AS1-202ENST00000430018 499 ntTSL 2 BASIC2.76□□□□□ -1.97
USP28Q96RU2 AC092427.1-202ENST00000430569 476 ntBASIC2.76□□□□□ -1.97
USP28Q96RU2 TAAR7P-201ENST00000436141 242 ntBASIC2.76□□□□□ -1.97
USP28Q96RU2 AC018816.1-203ENST00000441894 338 ntTSL 3 BASIC2.76□□□□□ -1.97
USP28Q96RU2 RPS3P1-201ENST00000456781 192 ntBASIC2.76□□□□□ -1.97
USP28Q96RU2 AL162395.1-201ENST00000457882 422 ntBASIC2.76□□□□□ -1.97
USP28Q96RU2 AC005062.1-201ENST00000457921 566 ntTSL 3 BASIC2.76□□□□□ -1.97
USP28Q96RU2 RPS29P15-201ENST00000458329 171 ntBASIC2.76□□□□□ -1.97
USP28Q96RU2 SNORD97-201ENST00000459187 142 ntBASIC2.76□□□□□ -1.97
USP28Q96RU2 AC006512.1-201ENST00000468816 291 ntBASIC2.76□□□□□ -1.97
USP28Q96RU2 RPL36AP51-201ENST00000487216 318 ntBASIC2.76□□□□□ -1.97
USP28Q96RU2 AC022272.1-201ENST00000503478 777 ntTSL 2 BASIC2.76□□□□□ -1.97
USP28Q96RU2 AC012055.2-201ENST00000504167 335 ntTSL 3 BASIC2.76□□□□□ -1.97
USP28Q96RU2 FAM92A1P2-202ENST00000504766 877 ntBASIC2.76□□□□□ -1.97
USP28Q96RU2 AC008700.1-202ENST00000513657 468 ntTSL 5 BASIC2.76□□□□□ -1.97
USP28Q96RU2 SNORD27.1-201ENST00000516319 72 ntBASIC2.76□□□□□ -1.97
USP28Q96RU2 RPPH1-2P-201ENST00000516688 293 ntBASIC2.76□□□□□ -1.97
USP28Q96RU2 AC104232.2-201ENST00000519680 769 ntTSL 5 BASIC2.76□□□□□ -1.97
USP28Q96RU2 AC104383.1-201ENST00000530297 370 ntBASIC2.76□□□□□ -1.97
USP28Q96RU2 AC008115.2-201ENST00000539988 241 ntTSL 3 BASIC2.76□□□□□ -1.97
USP28Q96RU2 AL445074.1-201ENST00000555362 318 ntTSL 2 BASIC2.76□□□□□ -1.97
USP28Q96RU2 AL359212.1-201ENST00000556608 614 ntBASIC2.76□□□□□ -1.97
USP28Q96RU2 ZNF519P2-201ENST00000557032 169 ntBASIC2.76□□□□□ -1.97
USP28Q96RU2 PWRN1-205ENST00000565295 465 ntTSL 3 BASIC2.76□□□□□ -1.97
USP28Q96RU2 AC113137.1-201ENST00000591869 558 ntTSL 4 BASIC2.76□□□□□ -1.97
USP28Q96RU2 AP001330.5-201ENST00000607176 411 ntBASIC2.76□□□□□ -1.97
USP28Q96RU2 AC008536.2-201ENST00000607284 349 ntBASIC2.76□□□□□ -1.97
USP28Q96RU2 AC067747.1-201ENST00000608026 250 ntBASIC2.76□□□□□ -1.97
USP28Q96RU2 LINC01515-217ENST00000620859 694 ntTSL 5 BASIC2.76□□□□□ -1.97
USP28Q96RU2 UCA1.1-201ENST00000620952 75 ntBASIC2.76□□□□□ -1.97
USP28Q96RU2 SENP7-205ENST00000394091 4434 ntAPPRIS ALT2 TSL 1 (best) BASIC2.76□□□□□ -1.97
USP28Q96RU2 DENND4A-202ENST00000443035 8665 ntTSL 1 (best) BASIC2.75□□□□□ -1.97
USP28Q96RU2 PLCZ1-209ENST00000539875 1398 ntTSL 1 (best) BASIC2.75□□□□□ -1.97
USP28Q96RU2 RICTOR-202ENST00000357387 9543 ntAPPRIS P1 TSL 1 (best) BASIC2.75□□□□□ -1.97
USP28Q96RU2 SNHG14-215ENST00000551631 4008 ntTSL 5 BASIC2.75□□□□□ -1.97
USP28Q96RU2 GABRG2-209ENST00000638660 3799 ntTSL 5 BASIC2.75□□□□□ -1.97
USP28Q96RU2 ZBTB8OS-201ENST00000341885 312 ntTSL 1 (best) BASIC2.75□□□□□ -1.97
USP28Q96RU2 MDM2-205ENST00000348801 798 ntTSL 1 (best) BASIC2.75□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 101.4 ms