Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 FTX_3.1-201ENST00000610451 147 ntBASIC3.91□□□□□ -1.78
CLIP3Q96DZ5 AL138880.2-201ENST00000616214 239 ntBASIC3.91□□□□□ -1.78
CLIP3Q96DZ5 NAA50-211ENST00000630058 177 ntTSL 5 BASIC3.91□□□□□ -1.78
CLIP3Q96DZ5 ZNF285B-201ENST00000561698 1767 ntBASIC3.91□□□□□ -1.78
CLIP3Q96DZ5 AC091152.2-201ENST00000591628 2569 ntBASIC3.91□□□□□ -1.78
CLIP3Q96DZ5 ECT2-211ENST00000441497 2825 ntAPPRIS P2 TSL 1 (best) BASIC3.9□□□□□ -1.78
CLIP3Q96DZ5 ZNF594-201ENST00000399604 4862 ntAPPRIS P1 BASIC3.9□□□□□ -1.78
CLIP3Q96DZ5 LINC02458-201ENST00000500381 2941 ntTSL 2 BASIC3.9□□□□□ -1.78
CLIP3Q96DZ5 ZNF826P-207ENST00000622273 1910 ntBASIC3.9□□□□□ -1.78
CLIP3Q96DZ5 AC007256.1-201ENST00000392253 2765 ntBASIC3.9□□□□□ -1.78
CLIP3Q96DZ5 CKAP5-201ENST00000312055 6532 ntTSL 5 BASIC3.9□□□□□ -1.79
CLIP3Q96DZ5 RNU6-562P-201ENST00000362731 107 ntBASIC3.9□□□□□ -1.79
CLIP3Q96DZ5 Y_RNA.556-201ENST00000384677 113 ntBASIC3.9□□□□□ -1.79
CLIP3Q96DZ5 RNU6-1109P-201ENST00000391187 107 ntBASIC3.9□□□□□ -1.79
CLIP3Q96DZ5 AL139039.1-201ENST00000401900 692 ntBASIC3.9□□□□□ -1.79
CLIP3Q96DZ5 MTHFD2P2-201ENST00000407725 247 ntBASIC3.9□□□□□ -1.79
CLIP3Q96DZ5 Y_RNA.594-201ENST00000410373 140 ntBASIC3.9□□□□□ -1.79
CLIP3Q96DZ5 RN7SKP202-201ENST00000410439 330 ntBASIC3.9□□□□□ -1.79
CLIP3Q96DZ5 RPL7P37-201ENST00000425095 738 ntBASIC3.9□□□□□ -1.79
CLIP3Q96DZ5 AC079799.1-201ENST00000430696 331 ntTSL 3 BASIC3.9□□□□□ -1.79
CLIP3Q96DZ5 AC133865.1-201ENST00000438619 339 ntTSL 3 BASIC3.9□□□□□ -1.79
CLIP3Q96DZ5 RPS29P7-201ENST00000439662 171 ntBASIC3.9□□□□□ -1.79
CLIP3Q96DZ5 AC116655.1-201ENST00000508324 901 ntBASIC3.9□□□□□ -1.79
CLIP3Q96DZ5 RNU6-470P-201ENST00000515954 104 ntBASIC3.9□□□□□ -1.79
CLIP3Q96DZ5 RNU6-1069P-201ENST00000516612 133 ntBASIC3.9□□□□□ -1.79
CLIP3Q96DZ5 MEG8-215ENST00000555354 469 ntTSL 3 BASIC3.9□□□□□ -1.79
CLIP3Q96DZ5 MAFTRR-204ENST00000568389 506 ntTSL 4 BASIC3.9□□□□□ -1.79
CLIP3Q96DZ5 AC120057.2-201ENST00000571520 271 ntBASIC3.9□□□□□ -1.79
CLIP3Q96DZ5 MIR1273C-201ENST00000578669 77 ntBASIC3.9□□□□□ -1.79
CLIP3Q96DZ5 AC005357.1-201ENST00000588399 301 ntBASIC3.9□□□□□ -1.79
CLIP3Q96DZ5 AC018462.2-201ENST00000605375 395 ntBASIC3.9□□□□□ -1.79
CLIP3Q96DZ5 MIR6128-201ENST00000615528 109 ntBASIC3.9□□□□□ -1.79
CLIP3Q96DZ5 MBNL1-220ENST00000493459 4205 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
CLIP3Q96DZ5 KERA-201ENST00000266719 2162 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
CLIP3Q96DZ5 DOCK7-201ENST00000251157 7084 ntAPPRIS ALT2 TSL 5 BASIC3.9□□□□□ -1.79
CLIP3Q96DZ5 C18orf54-202ENST00000382911 4056 ntTSL 5 BASIC3.9□□□□□ -1.79
CLIP3Q96DZ5 MYSM1-203ENST00000472487 7785 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
CLIP3Q96DZ5 HSPA8P4-201ENST00000511877 1920 ntBASIC3.89□□□□□ -1.79
CLIP3Q96DZ5 RANBP2-201ENST00000283195 11711 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
CLIP3Q96DZ5 DOCK7-219ENST00000635253 6423 ntAPPRIS ALT2 TSL 5 BASIC3.89□□□□□ -1.79
CLIP3Q96DZ5 OR4M1-202ENST00000641200 3493 ntAPPRIS P1 BASIC3.89□□□□□ -1.79
CLIP3Q96DZ5 AC005592.1-201ENST00000566527 1640 ntBASIC3.89□□□□□ -1.79
CLIP3Q96DZ5 Y_RNA.512-201ENST00000384518 102 ntBASIC3.89□□□□□ -1.79
CLIP3Q96DZ5 RNU6ATAC23P-201ENST00000408448 123 ntBASIC3.89□□□□□ -1.79
CLIP3Q96DZ5 RNU6-1050P-201ENST00000410388 107 ntBASIC3.89□□□□□ -1.79
CLIP3Q96DZ5 AC063979.1-201ENST00000415539 377 ntBASIC3.89□□□□□ -1.79
CLIP3Q96DZ5 LINC01349-201ENST00000416343 497 ntTSL 3 BASIC3.89□□□□□ -1.79
CLIP3Q96DZ5 AL589987.2-201ENST00000417426 582 ntTSL 2 BASIC3.89□□□□□ -1.79
CLIP3Q96DZ5 DPH3P2-201ENST00000422618 250 ntBASIC3.89□□□□□ -1.79
CLIP3Q96DZ5 U51244.1-201ENST00000423120 374 ntTSL 3 BASIC3.89□□□□□ -1.79
CLIP3Q96DZ5 AL590632.1-201ENST00000424289 371 ntBASIC3.89□□□□□ -1.79
CLIP3Q96DZ5 HIGD1AP11-201ENST00000438361 280 ntBASIC3.89□□□□□ -1.79
CLIP3Q96DZ5 AP002812.1-201ENST00000495378 474 ntBASIC3.89□□□□□ -1.79
CLIP3Q96DZ5 RNU6-120P-201ENST00000516077 103 ntBASIC3.89□□□□□ -1.79
CLIP3Q96DZ5 RNU6-928P-201ENST00000516876 104 ntBASIC3.89□□□□□ -1.79
CLIP3Q96DZ5 Y_RNA.708-201ENST00000516950 96 ntBASIC3.89□□□□□ -1.79
CLIP3Q96DZ5 AC023632.4-201ENST00000517783 191 ntBASIC3.89□□□□□ -1.79
CLIP3Q96DZ5 AC023442.1-201ENST00000531247 422 ntBASIC3.89□□□□□ -1.79
CLIP3Q96DZ5 CLEC7A-212ENST00000533022 625 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
CLIP3Q96DZ5 LINC02386-202ENST00000551287 564 ntTSL 4 BASIC3.89□□□□□ -1.79
CLIP3Q96DZ5 AL157871.3-201ENST00000557231 293 ntBASIC3.89□□□□□ -1.79
CLIP3Q96DZ5 AC074052.2-201ENST00000562516 214 ntTSL 3 BASIC3.89□□□□□ -1.79
CLIP3Q96DZ5 CYP4A43P-201ENST00000568156 121 ntBASIC3.89□□□□□ -1.79
CLIP3Q96DZ5 AC025627.2-201ENST00000576220 160 ntBASIC3.89□□□□□ -1.79
CLIP3Q96DZ5 ATP1B3P1-201ENST00000605365 821 ntBASIC3.89□□□□□ -1.79
CLIP3Q96DZ5 AC062037.2-201ENST00000610137 73 ntBASIC3.89□□□□□ -1.79
CLIP3Q96DZ5 MIR7702-201ENST00000621931 59 ntBASIC3.89□□□□□ -1.79
CLIP3Q96DZ5 AC006111.3-201ENST00000622137 383 ntBASIC3.89□□□□□ -1.79
CLIP3Q96DZ5 MIR6500-201ENST00000622700 86 ntBASIC3.89□□□□□ -1.79
CLIP3Q96DZ5 AC099506.2-201ENST00000623074 221 ntBASIC3.89□□□□□ -1.79
CLIP3Q96DZ5 AC034229.5-201ENST00000624258 185 ntBASIC3.89□□□□□ -1.79
CLIP3Q96DZ5 MPP6-209ENST00000625307 126 ntTSL 5 BASIC3.89□□□□□ -1.79
CLIP3Q96DZ5 ADGRL2-207ENST00000370723 5254 ntTSL 5 BASIC3.88□□□□□ -1.79
CLIP3Q96DZ5 AL161668.1-201ENST00000320322 358 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
CLIP3Q96DZ5 RNU6-490P-201ENST00000362985 107 ntBASIC3.88□□□□□ -1.79
CLIP3Q96DZ5 SNORD35B-201ENST00000363660 87 ntBASIC3.88□□□□□ -1.79
CLIP3Q96DZ5 RNU1-115P-201ENST00000365329 160 ntBASIC3.88□□□□□ -1.79
CLIP3Q96DZ5 RGS4-201ENST00000367906 930 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
CLIP3Q96DZ5 S100A12-201ENST00000368737 518 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
CLIP3Q96DZ5 Y_RNA.399-201ENST00000383955 105 ntBASIC3.88□□□□□ -1.79
CLIP3Q96DZ5 MIR554-201ENST00000384874 96 ntBASIC3.88□□□□□ -1.79
CLIP3Q96DZ5 SNORA16.2-201ENST00000390991 127 ntBASIC3.88□□□□□ -1.79
CLIP3Q96DZ5 AC112721.2-201ENST00000409910 541 ntTSL 4 BASIC3.88□□□□□ -1.79
CLIP3Q96DZ5 RNA5SP38-201ENST00000410750 119 ntBASIC3.88□□□□□ -1.79
CLIP3Q96DZ5 RPL7P10-201ENST00000417407 739 ntBASIC3.88□□□□□ -1.79
CLIP3Q96DZ5 AL158156.1-201ENST00000422509 473 ntBASIC3.88□□□□□ -1.79
CLIP3Q96DZ5 AL451060.1-203ENST00000431307 362 ntTSL 3 BASIC3.88□□□□□ -1.79
CLIP3Q96DZ5 AC004869.2-201ENST00000436501 229 ntTSL 3 BASIC3.88□□□□□ -1.79
CLIP3Q96DZ5 SETP5-201ENST00000437270 562 ntBASIC3.88□□□□□ -1.79
CLIP3Q96DZ5 AC008264.1-201ENST00000447612 367 ntBASIC3.88□□□□□ -1.79
CLIP3Q96DZ5 U3.44-201ENST00000458938 192 ntBASIC3.88□□□□□ -1.79
CLIP3Q96DZ5 RPL22P13-201ENST00000493291 347 ntBASIC3.88□□□□□ -1.79
CLIP3Q96DZ5 AC110767.1-201ENST00000508374 239 ntTSL 3 BASIC3.88□□□□□ -1.79
CLIP3Q96DZ5 RNU4ATAC7P-201ENST00000516280 125 ntBASIC3.88□□□□□ -1.79
CLIP3Q96DZ5 Y_RNA.721-201ENST00000517207 102 ntBASIC3.88□□□□□ -1.79
CLIP3Q96DZ5 AC020891.1-201ENST00000558785 174 ntTSL 3 BASIC3.88□□□□□ -1.79
CLIP3Q96DZ5 AC018554.1-202ENST00000565133 444 ntTSL 3 BASIC3.88□□□□□ -1.79
CLIP3Q96DZ5 MIR4474-201ENST00000579189 78 ntBASIC3.88□□□□□ -1.79
CLIP3Q96DZ5 AL512605.2-201ENST00000592972 256 ntBASIC3.88□□□□□ -1.79
CLIP3Q96DZ5 AC079610.3-201ENST00000606960 147 ntTSL 3 BASIC3.88□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 116.6 ms