Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 AC068050.1-201ENST00000394891 380 ntBASIC1.36□□□□□ -2.19
CCDC88AQ3V6T2 AL590084.2-201ENST00000401481 382 ntBASIC1.36□□□□□ -2.19
CCDC88AQ3V6T2 HMGB1P17-201ENST00000403495 628 ntBASIC1.36□□□□□ -2.19
CCDC88AQ3V6T2 AC005104.1-201ENST00000414896 442 ntTSL 3 BASIC1.36□□□□□ -2.19
CCDC88AQ3V6T2 AC010731.2-201ENST00000415275 440 ntTSL 3 BASIC1.36□□□□□ -2.19
CCDC88AQ3V6T2 SNRPEP9-201ENST00000436794 238 ntBASIC1.36□□□□□ -2.19
CCDC88AQ3V6T2 AC011998.3-201ENST00000457053 254 ntTSL 3 BASIC1.36□□□□□ -2.19
CCDC88AQ3V6T2 AC092620.2-201ENST00000458007 744 ntTSL 2 BASIC1.36□□□□□ -2.19
CCDC88AQ3V6T2 LINC02046-202ENST00000481334 390 ntTSL 3 BASIC1.36□□□□□ -2.19
CCDC88AQ3V6T2 AC026780.2-201ENST00000503489 730 ntTSL 5 BASIC1.36□□□□□ -2.19
CCDC88AQ3V6T2 AC105343.1-201ENST00000505586 358 ntTSL 3 BASIC1.36□□□□□ -2.19
CCDC88AQ3V6T2 COL6A4P2-205ENST00000509855 506 ntBASIC1.36□□□□□ -2.19
CCDC88AQ3V6T2 RNU6-928P-201ENST00000516876 104 ntBASIC1.36□□□□□ -2.19
CCDC88AQ3V6T2 AC087439.1-201ENST00000517920 398 ntTSL 3 BASIC1.36□□□□□ -2.19
CCDC88AQ3V6T2 AP004247.1-201ENST00000531556 1289 ntBASIC1.36□□□□□ -2.19
CCDC88AQ3V6T2 AC022880.1-201ENST00000534017 973 ntBASIC1.36□□□□□ -2.19
CCDC88AQ3V6T2 KLRF1-203ENST00000537723 598 ntTSL 1 (best) BASIC1.36□□□□□ -2.19
CCDC88AQ3V6T2 AC090079.2-201ENST00000575289 768 ntBASIC1.36□□□□□ -2.19
CCDC88AQ3V6T2 MIR3198-2-201ENST00000577868 80 ntBASIC1.36□□□□□ -2.19
CCDC88AQ3V6T2 BBIP1P1-201ENST00000602999 279 ntBASIC1.36□□□□□ -2.19
CCDC88AQ3V6T2 AC239868.4-201ENST00000608318 671 ntBASIC1.36□□□□□ -2.19
CCDC88AQ3V6T2 AC009237.15-201ENST00000610252 501 ntBASIC1.36□□□□□ -2.19
CCDC88AQ3V6T2 GPR171-203ENST00000617554 960 ntAPPRIS P1 BASIC1.36□□□□□ -2.19
CCDC88AQ3V6T2 AC093875.1-201ENST00000623688 504 ntBASIC1.36□□□□□ -2.19
CCDC88AQ3V6T2 SATB1-AS1-237ENST00000626982 735 ntTSL 5 BASIC1.36□□□□□ -2.19
CCDC88AQ3V6T2 GPR22-201ENST00000304402 2942 ntAPPRIS P1 TSL 1 (best) BASIC1.36□□□□□ -2.19
CCDC88AQ3V6T2 RNU6-354P-201ENST00000383862 107 ntBASIC1.35□□□□□ -2.19
CCDC88AQ3V6T2 RNU6-610P-201ENST00000384264 107 ntBASIC1.35□□□□□ -2.19
CCDC88AQ3V6T2 RNU6-1300P-201ENST00000391046 108 ntBASIC1.35□□□□□ -2.19
CCDC88AQ3V6T2 MDM2-208ENST00000393410 732 ntTSL 1 (best) BASIC1.35□□□□□ -2.19
CCDC88AQ3V6T2 MDM2-210ENST00000393413 657 ntTSL 1 (best) BASIC1.35□□□□□ -2.19
CCDC88AQ3V6T2 MTND3P20-201ENST00000407663 186 ntBASIC1.35□□□□□ -2.19
CCDC88AQ3V6T2 MTCO3P46-201ENST00000425787 232 ntBASIC1.35□□□□□ -2.19
CCDC88AQ3V6T2 RAC1P8-201ENST00000427086 527 ntBASIC1.35□□□□□ -2.19
CCDC88AQ3V6T2 ELOCP14-201ENST00000428070 331 ntBASIC1.35□□□□□ -2.19
CCDC88AQ3V6T2 LINC02095-201ENST00000430908 346 ntTSL 2 BASIC1.35□□□□□ -2.19
CCDC88AQ3V6T2 ELOCP7-201ENST00000439968 331 ntBASIC1.35□□□□□ -2.19
CCDC88AQ3V6T2 AL691517.1-201ENST00000440833 1235 ntBASIC1.35□□□□□ -2.19
CCDC88AQ3V6T2 GXYLT1P1-201ENST00000446657 490 ntBASIC1.35□□□□□ -2.19
CCDC88AQ3V6T2 RPL18AP17-201ENST00000455326 198 ntBASIC1.35□□□□□ -2.19
CCDC88AQ3V6T2 DYNLL1P5-201ENST00000467158 270 ntBASIC1.35□□□□□ -2.19
CCDC88AQ3V6T2 AC069133.1-201ENST00000522857 566 ntTSL 4 BASIC1.35□□□□□ -2.19
CCDC88AQ3V6T2 TSPAN19-204ENST00000532498 998 ntAPPRIS P1 TSL 5 BASIC1.35□□□□□ -2.19
CCDC88AQ3V6T2 LINC02384-205ENST00000539404 785 ntTSL 3 BASIC1.35□□□□□ -2.19
CCDC88AQ3V6T2 AC090519.2-201ENST00000559034 655 ntTSL 5 BASIC1.35□□□□□ -2.19
CCDC88AQ3V6T2 AC008121.1-201ENST00000603244 268 ntBASIC1.35□□□□□ -2.19
CCDC88AQ3V6T2 AL390208.1-201ENST00000605885 644 ntBASIC1.35□□□□□ -2.19
CCDC88AQ3V6T2 AC083798.2-205ENST00000608015 575 ntTSL 5 BASIC1.35□□□□□ -2.19
CCDC88AQ3V6T2 AC231657.1-201ENST00000624313 397 ntBASIC1.35□□□□□ -2.19
CCDC88AQ3V6T2 AC068700.1-201ENST00000565862 3754 ntBASIC1.35□□□□□ -2.19
CCDC88AQ3V6T2 AL390862.1-201ENST00000635467 1469 ntBASIC1.35□□□□□ -2.19
CCDC88AQ3V6T2 Y_RNA.245-201ENST00000364493 95 ntBASIC1.35□□□□□ -2.19
CCDC88AQ3V6T2 PTGES3P2-201ENST00000407942 482 ntBASIC1.35□□□□□ -2.19
CCDC88AQ3V6T2 DPRXP1-201ENST00000426312 460 ntBASIC1.35□□□□□ -2.19
CCDC88AQ3V6T2 AL445305.1-201ENST00000432577 575 ntBASIC1.35□□□□□ -2.19
CCDC88AQ3V6T2 RPS29P23-201ENST00000458635 123 ntBASIC1.35□□□□□ -2.19
CCDC88AQ3V6T2 AC108729.2-201ENST00000476543 840 ntBASIC1.35□□□□□ -2.19
CCDC88AQ3V6T2 LINC02173-201ENST00000504132 521 ntTSL 2 BASIC1.35□□□□□ -2.19
CCDC88AQ3V6T2 LINC01612-201ENST00000504509 469 ntTSL 3 BASIC1.35□□□□□ -2.19
CCDC88AQ3V6T2 AC112518.2-201ENST00000508565 425 ntBASIC1.35□□□□□ -2.19
CCDC88AQ3V6T2 SMAD1-AS2-201ENST00000508936 1090 ntTSL 1 (best) BASIC1.35□□□□□ -2.19
CCDC88AQ3V6T2 ZFAND1-217ENST00000521895 885 ntTSL 3 BASIC1.35□□□□□ -2.19
CCDC88AQ3V6T2 DEFB131D-201ENST00000526803 184 ntBASIC1.35□□□□□ -2.19
CCDC88AQ3V6T2 ROCK1P1-201ENST00000573767 549 ntBASIC1.35□□□□□ -2.19
CCDC88AQ3V6T2 AC008443.7-201ENST00000622195 246 ntBASIC1.35□□□□□ -2.19
CCDC88AQ3V6T2 AL121759.2-201ENST00000636173 570 ntTSL 4 BASIC1.35□□□□□ -2.19
CCDC88AQ3V6T2 ZNF679-201ENST00000255746 1297 ntAPPRIS P1 TSL 1 (best) BASIC1.34□□□□□ -2.19
CCDC88AQ3V6T2 C6orf62-201ENST00000378102 741 ntTSL 5 BASIC1.34□□□□□ -2.19
CCDC88AQ3V6T2 AP002784.2-201ENST00000397300 549 ntBASIC1.34□□□□□ -2.19
CCDC88AQ3V6T2 AL161449.1-201ENST00000414531 1199 ntBASIC1.34□□□□□ -2.19
CCDC88AQ3V6T2 SNRPEP10-201ENST00000420249 274 ntBASIC1.34□□□□□ -2.19
CCDC88AQ3V6T2 AC093155.1-201ENST00000440164 826 ntBASIC1.34□□□□□ -2.19
CCDC88AQ3V6T2 ARPC3P5-201ENST00000448802 534 ntBASIC1.34□□□□□ -2.19
CCDC88AQ3V6T2 AL135787.1-201ENST00000450154 302 ntTSL 3 BASIC1.34□□□□□ -2.19
CCDC88AQ3V6T2 LINC02377-202ENST00000505436 523 ntTSL 5 BASIC1.34□□□□□ -2.19
CCDC88AQ3V6T2 AC079148.1-201ENST00000565944 819 ntBASIC1.34□□□□□ -2.19
CCDC88AQ3V6T2 MIR4765-201ENST00000585007 77 ntBASIC1.34□□□□□ -2.19
CCDC88AQ3V6T2 AL357094.1-201ENST00000603845 844 ntBASIC1.34□□□□□ -2.19
CCDC88AQ3V6T2 AC069545.1-201ENST00000605671 358 ntBASIC1.34□□□□□ -2.19
CCDC88AQ3V6T2 MIR5739-201ENST00000619803 80 ntBASIC1.34□□□□□ -2.19
CCDC88AQ3V6T2 MIR1322-201ENST00000638013 71 ntBASIC1.34□□□□□ -2.19
CCDC88AQ3V6T2 RNU5E-8P-201ENST00000363502 116 ntBASIC1.33□□□□□ -2.2
CCDC88AQ3V6T2 Y_RNA.393-201ENST00000383936 102 ntBASIC1.33□□□□□ -2.2
CCDC88AQ3V6T2 AL109755.1-201ENST00000401791 649 ntBASIC1.33□□□□□ -2.2
CCDC88AQ3V6T2 AL158840.1-201ENST00000414132 523 ntTSL 3 BASIC1.33□□□□□ -2.2
CCDC88AQ3V6T2 LINC01473-202ENST00000427108 695 ntTSL 5 BASIC1.33□□□□□ -2.2
CCDC88AQ3V6T2 ABCC13-201ENST00000429114 611 ntTSL 3 BASIC1.33□□□□□ -2.2
CCDC88AQ3V6T2 MTCO1P53-201ENST00000441633 699 ntBASIC1.33□□□□□ -2.2
CCDC88AQ3V6T2 AC027575.1-201ENST00000481064 460 ntBASIC1.33□□□□□ -2.2
CCDC88AQ3V6T2 MIR892C-201ENST00000516410 77 ntBASIC1.33□□□□□ -2.2
CCDC88AQ3V6T2 AC090615.1-201ENST00000577519 154 ntBASIC1.33□□□□□ -2.2
CCDC88AQ3V6T2 AC068276.1-201ENST00000605793 379 ntBASIC1.33□□□□□ -2.2
CCDC88AQ3V6T2 MIR150-201ENST00000385048 84 ntBASIC1.33□□□□□ -2.2
CCDC88AQ3V6T2 SNORA40C-201ENST00000391285 128 ntBASIC1.33□□□□□ -2.2
CCDC88AQ3V6T2 MTCO1P56-201ENST00000401674 224 ntBASIC1.33□□□□□ -2.2
CCDC88AQ3V6T2 AL356432.1-201ENST00000405809 419 ntBASIC1.33□□□□□ -2.2
CCDC88AQ3V6T2 AC127391.1-201ENST00000411737 98 ntBASIC1.33□□□□□ -2.2
CCDC88AQ3V6T2 LINC01509-202ENST00000423523 408 ntTSL 3 BASIC1.33□□□□□ -2.2
CCDC88AQ3V6T2 TXNDC8-204ENST00000423740 356 ntTSL 1 (best) BASIC1.33□□□□□ -2.2
CCDC88AQ3V6T2 AP000949.1-201ENST00000438328 629 ntBASIC1.33□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 108.6 ms