Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 RNA5SP380-201ENST00000517190 98 ntBASIC3.65□□□□□ -1.83
COL3A1P02461 MTND4P7-201ENST00000523876 130 ntBASIC3.65□□□□□ -1.83
COL3A1P02461 FAM60DP-201ENST00000524174 632 ntBASIC3.65□□□□□ -1.83
COL3A1P02461 AP001804.3-201ENST00000525146 880 ntBASIC3.65□□□□□ -1.83
COL3A1P02461 RGS4-209ENST00000531057 544 ntTSL 4 BASIC3.65□□□□□ -1.83
COL3A1P02461 AC022081.1-201ENST00000537327 433 ntTSL 2 BASIC3.65□□□□□ -1.83
COL3A1P02461 LINC02442-201ENST00000537732 343 ntTSL 3 BASIC3.65□□□□□ -1.83
COL3A1P02461 IMMP1LP2-201ENST00000552954 492 ntBASIC3.65□□□□□ -1.83
COL3A1P02461 PWRN1-203ENST00000564898 389 ntTSL 5 BASIC3.65□□□□□ -1.83
COL3A1P02461 MIR4790-201ENST00000577799 79 ntBASIC3.65□□□□□ -1.83
COL3A1P02461 AC138761.3-201ENST00000579993 334 ntBASIC3.65□□□□□ -1.83
COL3A1P02461 AC115085.1-201ENST00000588924 229 ntBASIC3.65□□□□□ -1.83
COL3A1P02461 AC005046.1-201ENST00000608515 625 ntBASIC3.65□□□□□ -1.83
COL3A1P02461 CDKN2B-AS.1-201ENST00000617921 150 ntBASIC3.65□□□□□ -1.83
COL3A1P02461 ZFAT-AS1_1.1-201ENST00000620907 79 ntBASIC3.65□□□□□ -1.83
COL3A1P02461 NAA50-211ENST00000630058 177 ntTSL 5 BASIC3.65□□□□□ -1.83
COL3A1P02461 C2orf73-202ENST00000398634 1921 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.83
COL3A1P02461 DMXL1-201ENST00000311085 11072 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.83
COL3A1P02461 COPS2-203ENST00000542928 1580 ntTSL 2 BASIC3.65□□□□□ -1.83
COL3A1P02461 SLCO1B1-201ENST00000256958 2229 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.83
COL3A1P02461 LINC01111-201ENST00000518732 1663 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
COL3A1P02461 CASC1-205ENST00000545133 2146 ntAPPRIS ALT2 TSL 2 BASIC3.64□□□□□ -1.83
COL3A1P02461 RNY3P13-201ENST00000365542 102 ntBASIC3.64□□□□□ -1.83
COL3A1P02461 MEIG1-201ENST00000378240 507 ntAPPRIS P1 TSL 2 BASIC3.64□□□□□ -1.83
COL3A1P02461 RNU6-1207P-201ENST00000384343 107 ntBASIC3.64□□□□□ -1.83
COL3A1P02461 MIR558-201ENST00000384920 94 ntBASIC3.64□□□□□ -1.83
COL3A1P02461 AL139039.1-201ENST00000401900 692 ntBASIC3.64□□□□□ -1.83
COL3A1P02461 NT5C3A-205ENST00000409467 1032 ntAPPRIS ALT1 TSL 5 BASIC3.64□□□□□ -1.83
COL3A1P02461 RNA5SP184-201ENST00000411071 108 ntBASIC3.64□□□□□ -1.83
COL3A1P02461 AC009302.1-201ENST00000417147 390 ntBASIC3.64□□□□□ -1.83
COL3A1P02461 LINC02336-201ENST00000434117 330 ntTSL 3 BASIC3.64□□□□□ -1.83
COL3A1P02461 FTH1P1-201ENST00000437933 532 ntBASIC3.64□□□□□ -1.83
COL3A1P02461 AC104058.1-201ENST00000448028 297 ntBASIC3.64□□□□□ -1.83
COL3A1P02461 AC005297.2-201ENST00000450430 606 ntBASIC3.64□□□□□ -1.83
COL3A1P02461 CFAP44-AS1-201ENST00000473329 396 ntTSL 2 BASIC3.64□□□□□ -1.83
COL3A1P02461 RPS27P27-201ENST00000498779 255 ntBASIC3.64□□□□□ -1.83
COL3A1P02461 AL359273.1-203ENST00000506295 602 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
COL3A1P02461 AC087439.1-201ENST00000517920 398 ntTSL 3 BASIC3.64□□□□□ -1.83
COL3A1P02461 LINC02155-201ENST00000519215 407 ntTSL 5 BASIC3.64□□□□□ -1.83
COL3A1P02461 AP005435.4-201ENST00000529514 284 ntBASIC3.64□□□□□ -1.83
COL3A1P02461 PTP4A1P6-201ENST00000531034 478 ntBASIC3.64□□□□□ -1.83
COL3A1P02461 AC128657.1-201ENST00000549459 145 ntBASIC3.64□□□□□ -1.83
COL3A1P02461 AC090398.1-202ENST00000580403 457 ntTSL 2 BASIC3.64□□□□□ -1.83
COL3A1P02461 MIR4775-201ENST00000581168 75 ntBASIC3.64□□□□□ -1.83
COL3A1P02461 MIR4424-201ENST00000585257 86 ntBASIC3.64□□□□□ -1.83
COL3A1P02461 MAPKAPK5-AS1-205ENST00000590479 543 ntTSL 2 BASIC3.64□□□□□ -1.83
COL3A1P02461 AL109918.3-201ENST00000603072 338 ntBASIC3.64□□□□□ -1.83
COL3A1P02461 AL670379.11-201ENST00000604059 253 ntBASIC3.64□□□□□ -1.83
COL3A1P02461 AL670379.10-201ENST00000604330 253 ntBASIC3.64□□□□□ -1.83
COL3A1P02461 NUTF2P8-201ENST00000604593 363 ntBASIC3.64□□□□□ -1.83
COL3A1P02461 AL670379.12-201ENST00000605291 253 ntBASIC3.64□□□□□ -1.83
COL3A1P02461 AL670379.9-201ENST00000605428 253 ntBASIC3.64□□□□□ -1.83
COL3A1P02461 AC022893.3-201ENST00000607665 437 ntBASIC3.64□□□□□ -1.83
COL3A1P02461 AL390240.1-201ENST00000612950 384 ntBASIC3.64□□□□□ -1.83
COL3A1P02461 AC004696.1-201ENST00000614345 607 ntBASIC3.64□□□□□ -1.83
COL3A1P02461 AC105265.4-201ENST00000618391 306 ntTSL 5 BASIC3.64□□□□□ -1.83
COL3A1P02461 PLAG1-201ENST00000316981 7322 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
COL3A1P02461 DICER1-203ENST00000526495 10331 ntAPPRIS P1 TSL 5 BASIC3.64□□□□□ -1.83
COL3A1P02461 AL359693.1-201ENST00000614959 2407 ntBASIC3.64□□□□□ -1.83
COL3A1P02461 GAPT-201ENST00000318469 2119 ntAPPRIS P1 BASIC3.64□□□□□ -1.83
COL3A1P02461 C5orf42-205ENST00000508244 11062 ntAPPRIS P2 TSL 5 BASIC3.63□□□□□ -1.83
COL3A1P02461 AL139276.1-201ENST00000311910 1001 ntBASIC3.63□□□□□ -1.83
COL3A1P02461 TSHB-202ENST00000369517 474 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
COL3A1P02461 DEFB119-202ENST00000376315 324 ntAPPRIS ALT2 TSL 1 (best) BASIC3.63□□□□□ -1.83
COL3A1P02461 AL390198.1-201ENST00000376445 320 ntTSL 2 BASIC3.63□□□□□ -1.83
COL3A1P02461 RNU4-70P-201ENST00000384579 139 ntBASIC3.63□□□□□ -1.83
COL3A1P02461 RNU6-278P-201ENST00000390945 109 ntBASIC3.63□□□□□ -1.83
COL3A1P02461 DSCR8-202ENST00000400477 534 ntAPPRIS ALT2 TSL 1 (best) BASIC3.63□□□□□ -1.83
COL3A1P02461 AL139397.2-201ENST00000404529 772 ntBASIC3.63□□□□□ -1.83
COL3A1P02461 CCDC126-203ENST00000410069 890 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
COL3A1P02461 MCFD2P1-201ENST00000417812 300 ntBASIC3.63□□□□□ -1.83
COL3A1P02461 AC018865.2-201ENST00000423631 129 ntBASIC3.63□□□□□ -1.83
COL3A1P02461 AC096644.2-201ENST00000429278 159 ntBASIC3.63□□□□□ -1.83
COL3A1P02461 GYPB-201ENST00000429670 239 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
COL3A1P02461 AC092813.2-201ENST00000434540 399 ntTSL 3 BASIC3.63□□□□□ -1.83
COL3A1P02461 GPC6-AS1-201ENST00000436329 698 ntTSL 5 BASIC3.63□□□□□ -1.83
COL3A1P02461 AC133865.1-201ENST00000438619 339 ntTSL 3 BASIC3.63□□□□□ -1.83
COL3A1P02461 TRBV26-201ENST00000456572 344 ntBASIC3.63□□□□□ -1.83
COL3A1P02461 AC011998.3-201ENST00000457053 254 ntTSL 3 BASIC3.63□□□□□ -1.83
COL3A1P02461 SNRPFP3-201ENST00000457792 225 ntBASIC3.63□□□□□ -1.83
COL3A1P02461 AC010655.3-201ENST00000478818 450 ntBASIC3.63□□□□□ -1.83
COL3A1P02461 AC092059.1-201ENST00000485347 429 ntTSL 3 BASIC3.63□□□□□ -1.83
COL3A1P02461 AC116562.3-201ENST00000506136 177 ntBASIC3.63□□□□□ -1.83
COL3A1P02461 AC104136.1-201ENST00000512969 394 ntBASIC3.63□□□□□ -1.83
COL3A1P02461 LIAS-206ENST00000513731 826 ntTSL 5 BASIC3.63□□□□□ -1.83
COL3A1P02461 RNA5SP282-201ENST00000516355 108 ntBASIC3.63□□□□□ -1.83
COL3A1P02461 RNA5SP454-201ENST00000517231 127 ntBASIC3.63□□□□□ -1.83
COL3A1P02461 AC068587.5-201ENST00000528506 175 ntBASIC3.63□□□□□ -1.83
COL3A1P02461 MGST1-215ENST00000540056 546 ntTSL 3 BASIC3.63□□□□□ -1.83
COL3A1P02461 AF038458.1-201ENST00000588406 262 ntBASIC3.63□□□□□ -1.83
COL3A1P02461 AC004832.5-201ENST00000608677 401 ntBASIC3.63□□□□□ -1.83
COL3A1P02461 AL162373.1-201ENST00000620433 407 ntBASIC3.63□□□□□ -1.83
COL3A1P02461 AL159972.1-201ENST00000625150 448 ntBASIC3.63□□□□□ -1.83
COL3A1P02461 CYP3A51P-201ENST00000633513 256 ntBASIC3.63□□□□□ -1.83
COL3A1P02461 HDX-206ENST00000506585 6158 ntTSL 2 BASIC3.63□□□□□ -1.83
COL3A1P02461 AC011460.1-201ENST00000636268 1834 ntBASIC3.63□□□□□ -1.83
COL3A1P02461 KIAA0586-215ENST00000619722 5597 ntAPPRIS ALT2 TSL 2 BASIC3.63□□□□□ -1.83
COL3A1P02461 SLC5A3-201ENST00000381151 11576 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
COL3A1P02461 OR56A1-203ENST00000641900 8448 ntAPPRIS P1 BASIC3.63□□□□□ -1.83
COL3A1P02461 SERPINI2-209ENST00000616363 1769 ntTSL 5 BASIC3.63□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 136.8 ms