Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 MYL8P-204ENST00000431574 518 ntBASIC3.39□□□□□ -1.87
VPS4AQ9UN37 AF274573.2-201ENST00000437772 520 ntTSL 5 BASIC3.39□□□□□ -1.87
VPS4AQ9UN37 MRPL50P4-201ENST00000446432 475 ntBASIC3.39□□□□□ -1.87
VPS4AQ9UN37 LINC01810-201ENST00000450397 411 ntTSL 3 BASIC3.39□□□□□ -1.87
VPS4AQ9UN37 DCLRE1CP1-201ENST00000454630 470 ntBASIC3.39□□□□□ -1.87
VPS4AQ9UN37 RPS15AP34-201ENST00000487776 387 ntBASIC3.39□□□□□ -1.87
VPS4AQ9UN37 AC022493.1-201ENST00000492984 337 ntBASIC3.39□□□□□ -1.87
VPS4AQ9UN37 RPL30P5-201ENST00000494923 336 ntBASIC3.39□□□□□ -1.87
VPS4AQ9UN37 AC103851.1-201ENST00000506833 274 ntBASIC3.39□□□□□ -1.87
VPS4AQ9UN37 RPL23AP94-201ENST00000512518 302 ntBASIC3.39□□□□□ -1.87
VPS4AQ9UN37 SNORA14.1-201ENST00000516113 141 ntBASIC3.39□□□□□ -1.87
VPS4AQ9UN37 RNU6-1282P-201ENST00000516735 96 ntBASIC3.39□□□□□ -1.87
VPS4AQ9UN37 AC105029.1-201ENST00000520250 669 ntBASIC3.39□□□□□ -1.87
VPS4AQ9UN37 IL7-206ENST00000520269 456 ntTSL 3 BASIC3.39□□□□□ -1.87
VPS4AQ9UN37 UTP23-205ENST00000520733 369 ntTSL 3 BASIC3.39□□□□□ -1.87
VPS4AQ9UN37 AC104211.1-202ENST00000521307 866 ntTSL 3 BASIC3.39□□□□□ -1.87
VPS4AQ9UN37 AC022690.1-201ENST00000526681 550 ntBASIC3.39□□□□□ -1.87
VPS4AQ9UN37 AC006518.2-202ENST00000544947 297 ntTSL 2 BASIC3.39□□□□□ -1.87
VPS4AQ9UN37 AC026464.5-201ENST00000562497 722 ntBASIC3.39□□□□□ -1.87
VPS4AQ9UN37 AC011933.3-201ENST00000578226 372 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
VPS4AQ9UN37 LRRC37A5P-203ENST00000580181 585 ntBASIC3.39□□□□□ -1.87
VPS4AQ9UN37 MIR3124-201ENST00000582636 67 ntBASIC3.39□□□□□ -1.87
VPS4AQ9UN37 AC011825.2-201ENST00000583138 553 ntTSL 4 BASIC3.39□□□□□ -1.87
VPS4AQ9UN37 RNU1-30P-201ENST00000606575 163 ntBASIC3.39□□□□□ -1.87
VPS4AQ9UN37 U2.17-201ENST00000611454 95 ntBASIC3.39□□□□□ -1.87
VPS4AQ9UN37 AC093913.1-201ENST00000614178 329 ntBASIC3.39□□□□□ -1.87
VPS4AQ9UN37 MIR6852-201ENST00000621699 66 ntBASIC3.39□□□□□ -1.87
VPS4AQ9UN37 VPS8-228ENST00000628962 207 ntTSL 5 BASIC3.39□□□□□ -1.87
VPS4AQ9UN37 CYP3A43-217ENST00000631161 328 ntTSL 5 BASIC3.39□□□□□ -1.87
VPS4AQ9UN37 AL133216.2-202ENST00000634512 349 ntBASIC3.39□□□□□ -1.87
VPS4AQ9UN37 AC112487.2-201ENST00000637950 304 ntBASIC3.39□□□□□ -1.87
VPS4AQ9UN37 TBC1D15-210ENST00000485960 2489 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
VPS4AQ9UN37 FIGNL1-203ENST00000419119 3700 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
VPS4AQ9UN37 BCLAF3-202ENST00000379682 3217 ntAPPRIS ALT2 TSL 5 BASIC3.39□□□□□ -1.87
VPS4AQ9UN37 SLC9C1-205ENST00000487372 3979 ntAPPRIS ALT2 TSL 1 (best) BASIC3.39□□□□□ -1.87
VPS4AQ9UN37 NBPF20-201ENST00000369373 18760 ntAPPRIS ALT2 TSL 5 BASIC3.39□□□□□ -1.87
VPS4AQ9UN37 LINC00890-202ENST00000569275 4595 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
VPS4AQ9UN37 MTND5P27-201ENST00000428871 1720 ntBASIC3.39□□□□□ -1.87
VPS4AQ9UN37 ECT2-211ENST00000441497 2825 ntAPPRIS P2 TSL 1 (best) BASIC3.38□□□□□ -1.87
VPS4AQ9UN37 AL049781.1-201ENST00000623195 3585 ntBASIC3.38□□□□□ -1.87
VPS4AQ9UN37 CHD9-213ENST00000564845 11504 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
VPS4AQ9UN37 MYOT-208ENST00000515645 1578 ntTSL 2 BASIC3.38□□□□□ -1.87
VPS4AQ9UN37 AC073544.1-201ENST00000600110 1595 ntBASIC3.38□□□□□ -1.87
VPS4AQ9UN37 TTN-204ENST00000360870 18218 ntTSL 5 BASIC3.38□□□□□ -1.87
VPS4AQ9UN37 UEVLD-208ENST00000535484 1963 ntTSL 2 BASIC3.38□□□□□ -1.87
VPS4AQ9UN37 OR5I1-201ENST00000301532 945 ntAPPRIS P1 BASIC3.38□□□□□ -1.87
VPS4AQ9UN37 Y_RNA.11-201ENST00000362375 109 ntBASIC3.38□□□□□ -1.87
VPS4AQ9UN37 Y_RNA.245-201ENST00000364493 95 ntBASIC3.38□□□□□ -1.87
VPS4AQ9UN37 SNORA75B-201ENST00000384053 137 ntBASIC3.38□□□□□ -1.87
VPS4AQ9UN37 Y_RNA.474-201ENST00000384341 102 ntBASIC3.38□□□□□ -1.87
VPS4AQ9UN37 MIR490-201ENST00000384865 128 ntBASIC3.38□□□□□ -1.87
VPS4AQ9UN37 MIR493-201ENST00000385254 89 ntBASIC3.38□□□□□ -1.87
VPS4AQ9UN37 MIR301A-201ENST00000385261 86 ntBASIC3.38□□□□□ -1.87
VPS4AQ9UN37 MIR591-201ENST00000385290 95 ntBASIC3.38□□□□□ -1.87
VPS4AQ9UN37 RNU6-1197P-201ENST00000391183 107 ntBASIC3.38□□□□□ -1.87
VPS4AQ9UN37 RNU6-607P-201ENST00000411283 108 ntBASIC3.38□□□□□ -1.87
VPS4AQ9UN37 NDUFB4P5-201ENST00000415445 361 ntBASIC3.38□□□□□ -1.87
VPS4AQ9UN37 AC063979.1-201ENST00000415539 377 ntBASIC3.38□□□□□ -1.87
VPS4AQ9UN37 YPEL5P1-201ENST00000419731 367 ntBASIC3.38□□□□□ -1.87
VPS4AQ9UN37 LANCL1-AS1-203ENST00000433296 864 ntTSL 2 BASIC3.38□□□□□ -1.87
VPS4AQ9UN37 AL033504.1-204ENST00000434985 413 ntTSL 2 BASIC3.38□□□□□ -1.87
VPS4AQ9UN37 HMGN2P20-201ENST00000437531 273 ntBASIC3.38□□□□□ -1.87
VPS4AQ9UN37 Z82210.1-201ENST00000440037 231 ntBASIC3.38□□□□□ -1.87
VPS4AQ9UN37 AC092162.2-204ENST00000451851 566 ntTSL 4 BASIC3.38□□□□□ -1.87
VPS4AQ9UN37 TH2LCRR-203ENST00000457489 439 ntTSL 3 BASIC3.38□□□□□ -1.87
VPS4AQ9UN37 RPS27P29-201ENST00000463110 252 ntBASIC3.38□□□□□ -1.87
VPS4AQ9UN37 AL135752.1-201ENST00000479477 471 ntBASIC3.38□□□□□ -1.87
VPS4AQ9UN37 AL627309.4-201ENST00000496488 457 ntTSL 5 BASIC3.38□□□□□ -1.87
VPS4AQ9UN37 TRBVA-201ENST00000498804 316 ntBASIC3.38□□□□□ -1.87
VPS4AQ9UN37 ENSA-210ENST00000503241 574 ntTSL 3 BASIC3.38□□□□□ -1.87
VPS4AQ9UN37 LIAS-206ENST00000513731 826 ntTSL 5 BASIC3.38□□□□□ -1.87
VPS4AQ9UN37 AC105999.1-201ENST00000518722 473 ntTSL 3 BASIC3.38□□□□□ -1.87
VPS4AQ9UN37 AP002992.1-202ENST00000530842 551 ntTSL 2 BASIC3.38□□□□□ -1.87
VPS4AQ9UN37 AP000889.2-201ENST00000532684 490 ntBASIC3.38□□□□□ -1.87
VPS4AQ9UN37 AP000786.1-201ENST00000541092 581 ntTSL 4 BASIC3.38□□□□□ -1.87
VPS4AQ9UN37 AC007458.1-201ENST00000542812 373 ntBASIC3.38□□□□□ -1.87
VPS4AQ9UN37 AC027288.1-203ENST00000552167 567 ntTSL 4 BASIC3.38□□□□□ -1.87
VPS4AQ9UN37 EGLN3-AS1-201ENST00000555922 308 ntTSL 3 BASIC3.38□□□□□ -1.87
VPS4AQ9UN37 AL157871.3-201ENST00000557231 293 ntBASIC3.38□□□□□ -1.87
VPS4AQ9UN37 PSMA4-205ENST00000558281 773 ntTSL 3 BASIC3.38□□□□□ -1.87
VPS4AQ9UN37 hsa-mir-3119-1.1-201ENST00000577602 85 ntBASIC3.38□□□□□ -1.87
VPS4AQ9UN37 MIR3942-201ENST00000585264 109 ntBASIC3.38□□□□□ -1.87
VPS4AQ9UN37 AC012119.1-201ENST00000603184 222 ntBASIC3.38□□□□□ -1.87
VPS4AQ9UN37 AL683887.1-201ENST00000603401 287 ntTSL 3 BASIC3.38□□□□□ -1.87
VPS4AQ9UN37 AC135507.2-201ENST00000612443 309 ntBASIC3.38□□□□□ -1.87
VPS4AQ9UN37 DUSP12P1-201ENST00000612874 516 ntBASIC3.38□□□□□ -1.87
VPS4AQ9UN37 AP003355.3-201ENST00000623465 114 ntBASIC3.38□□□□□ -1.87
VPS4AQ9UN37 SEPT14P19-202ENST00000632397 370 ntTSL 3 BASIC3.38□□□□□ -1.87
VPS4AQ9UN37 TPTEP1-208ENST00000636884 213 ntBASIC3.38□□□□□ -1.87
VPS4AQ9UN37 FOXP2-227ENST00000638397 240 ntTSL 5 BASIC3.38□□□□□ -1.87
VPS4AQ9UN37 IBTK-209ENST00000510291 4109 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
VPS4AQ9UN37 KIAA1841-202ENST00000356719 2149 ntTSL 5 BASIC3.38□□□□□ -1.87
VPS4AQ9UN37 SPEF2-203ENST00000440995 5964 ntAPPRIS ALT2 TSL 5 BASIC3.38□□□□□ -1.87
VPS4AQ9UN37 LUZP2-208ENST00000620308 4981 ntTSL 5 BASIC3.37□□□□□ -1.87
VPS4AQ9UN37 SAMD9-201ENST00000379958 6852 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
VPS4AQ9UN37 TMEM59-205ENST00000371348 1911 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
VPS4AQ9UN37 PHF3-202ENST00000393387 6947 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
VPS4AQ9UN37 CCDC30-212ENST00000507855 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC3.37□□□□□ -1.87
VPS4AQ9UN37 RNU4-73P-201ENST00000363164 141 ntBASIC3.37□□□□□ -1.87
VPS4AQ9UN37 Y_RNA.184-201ENST00000363884 108 ntBASIC3.37□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 129.2 ms