Protein–RNA interactions for Protein: Q9NVE4

CCDC87, Coiled-coil domain-containing protein 87, humanhuman

Predictions only

Length 849 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC87Q9NVE4 AC084398.2-201ENST00000551918 564 ntTSL 4 BASIC4.99□□□□□ -1.61
CCDC87Q9NVE4 AL645944.1-201ENST00000603857 493 ntBASIC4.99□□□□□ -1.61
CCDC87Q9NVE4 AC005000.2-201ENST00000605468 310 ntBASIC4.99□□□□□ -1.61
CCDC87Q9NVE4 AC123912.5-201ENST00000605470 343 ntBASIC4.99□□□□□ -1.61
CCDC87Q9NVE4 AC244517.5-202ENST00000623741 500 ntTSL 3 BASIC4.99□□□□□ -1.61
CCDC87Q9NVE4 IFI44L-201ENST00000370751 5874 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
CCDC87Q9NVE4 ZC3H7A-202ENST00000396516 3845 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
CCDC87Q9NVE4 MPDZ-211ENST00000536827 6176 ntAPPRIS ALT2 TSL 1 (best) BASIC4.98□□□□□ -1.61
CCDC87Q9NVE4 RPL9P7-201ENST00000330965 580 ntBASIC4.98□□□□□ -1.61
CCDC87Q9NVE4 MIR625-201ENST00000385047 85 ntBASIC4.98□□□□□ -1.61
CCDC87Q9NVE4 AL627311.1-201ENST00000431514 115 ntBASIC4.98□□□□□ -1.61
CCDC87Q9NVE4 MYL8P-204ENST00000431574 518 ntBASIC4.98□□□□□ -1.61
CCDC87Q9NVE4 AL159987.2-201ENST00000432754 307 ntBASIC4.98□□□□□ -1.61
CCDC87Q9NVE4 AL353997.1-201ENST00000432936 108 ntBASIC4.98□□□□□ -1.61
CCDC87Q9NVE4 AC083863.1-201ENST00000438811 231 ntBASIC4.98□□□□□ -1.61
CCDC87Q9NVE4 AL513043.1-201ENST00000439124 535 ntBASIC4.98□□□□□ -1.61
CCDC87Q9NVE4 AC073910.1-201ENST00000445047 438 ntBASIC4.98□□□□□ -1.61
CCDC87Q9NVE4 RPL9P9-202ENST00000466501 579 ntBASIC4.98□□□□□ -1.61
CCDC87Q9NVE4 AC114801.2-201ENST00000503825 781 ntBASIC4.98□□□□□ -1.61
CCDC87Q9NVE4 AC109479.2-201ENST00000517842 174 ntBASIC4.98□□□□□ -1.61
CCDC87Q9NVE4 AC131281.1-201ENST00000522984 164 ntBASIC4.98□□□□□ -1.61
CCDC87Q9NVE4 AC073655.2-202ENST00000547927 401 ntTSL 3 BASIC4.98□□□□□ -1.61
CCDC87Q9NVE4 MIR3922-201ENST00000585192 84 ntBASIC4.98□□□□□ -1.61
CCDC87Q9NVE4 AC107031.1-201ENST00000604939 347 ntTSL 2 BASIC4.98□□□□□ -1.61
CCDC87Q9NVE4 LINC01232-201ENST00000625254 836 ntTSL 5 BASIC4.98□□□□□ -1.61
CCDC87Q9NVE4 AGBL2-201ENST00000357610 3295 ntAPPRIS ALT2 TSL 5 BASIC4.98□□□□□ -1.61
CCDC87Q9NVE4 ZNF678-202ENST00000397097 8212 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
CCDC87Q9NVE4 ZNF808-201ENST00000359798 3600 ntAPPRIS P1 TSL 5 BASIC4.98□□□□□ -1.61
CCDC87Q9NVE4 SLAIN1-203ENST00000351546 2394 ntTSL 2 BASIC4.98□□□□□ -1.61
CCDC87Q9NVE4 SLC44A5-202ENST00000370859 3896 ntAPPRIS ALT2 TSL 2 BASIC4.97□□□□□ -1.61
CCDC87Q9NVE4 LINC00283-201ENST00000430111 1947 ntTSL 5 BASIC4.97□□□□□ -1.61
CCDC87Q9NVE4 AL359693.1-201ENST00000614959 2407 ntBASIC4.97□□□□□ -1.61
CCDC87Q9NVE4 NDST4-201ENST00000264363 3351 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
CCDC87Q9NVE4 C2CD6-204ENST00000450242 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC4.97□□□□□ -1.61
CCDC87Q9NVE4 MARK2P15-201ENST00000432204 2186 ntBASIC4.97□□□□□ -1.61
CCDC87Q9NVE4 SPAG5-AS1-202ENST00000424210 1551 ntTSL 2 BASIC4.97□□□□□ -1.61
CCDC87Q9NVE4 DMXL2-202ENST00000449909 7465 ntAPPRIS ALT2 TSL 1 (best) BASIC4.97□□□□□ -1.61
CCDC87Q9NVE4 Y_RNA.106-201ENST00000363189 100 ntBASIC4.97□□□□□ -1.61
CCDC87Q9NVE4 Y_RNA.276-201ENST00000364732 109 ntBASIC4.97□□□□□ -1.61
CCDC87Q9NVE4 RNU4-42P-201ENST00000364738 142 ntBASIC4.97□□□□□ -1.61
CCDC87Q9NVE4 RNU6-384P-201ENST00000364900 104 ntBASIC4.97□□□□□ -1.61
CCDC87Q9NVE4 EIF4EP2-201ENST00000422816 654 ntBASIC4.97□□□□□ -1.61
CCDC87Q9NVE4 AL390961.1-201ENST00000446557 319 ntTSL 2 BASIC4.97□□□□□ -1.61
CCDC87Q9NVE4 NHS-AS1-201ENST00000452788 366 ntTSL 3 BASIC4.97□□□□□ -1.61
CCDC87Q9NVE4 snoU13.4-201ENST00000458916 104 ntBASIC4.97□□□□□ -1.61
CCDC87Q9NVE4 RN7SL271P-201ENST00000487601 295 ntBASIC4.97□□□□□ -1.61
CCDC87Q9NVE4 NDUFB4P9-201ENST00000511646 388 ntBASIC4.97□□□□□ -1.61
CCDC87Q9NVE4 RNY3P15-201ENST00000516297 97 ntBASIC4.97□□□□□ -1.61
CCDC87Q9NVE4 RNU6-1256P-201ENST00000516539 103 ntBASIC4.97□□□□□ -1.61
CCDC87Q9NVE4 Y_RNA.687-201ENST00000516558 91 ntBASIC4.97□□□□□ -1.61
CCDC87Q9NVE4 Y_RNA.715-201ENST00000517082 110 ntBASIC4.97□□□□□ -1.61
CCDC87Q9NVE4 RNA5SP290-201ENST00000517133 127 ntBASIC4.97□□□□□ -1.61
CCDC87Q9NVE4 AC087664.2-201ENST00000522898 551 ntTSL 4 BASIC4.97□□□□□ -1.61
CCDC87Q9NVE4 MFAP5-211ENST00000540087 492 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
CCDC87Q9NVE4 LINC02459-201ENST00000551761 474 ntTSL 3 BASIC4.97□□□□□ -1.61
CCDC87Q9NVE4 MIR5188-201ENST00000583467 113 ntBASIC4.97□□□□□ -1.61
CCDC87Q9NVE4 AC062037.2-201ENST00000610137 73 ntBASIC4.97□□□□□ -1.61
CCDC87Q9NVE4 AC107871.2-201ENST00000612894 502 ntBASIC4.97□□□□□ -1.61
CCDC87Q9NVE4 AC004852.3-201ENST00000614131 326 ntBASIC4.97□□□□□ -1.61
CCDC87Q9NVE4 U2.1-201ENST00000618978 145 ntBASIC4.97□□□□□ -1.61
CCDC87Q9NVE4 C4orf22-209ENST00000621014 228 ntTSL 3 BASIC4.97□□□□□ -1.61
CCDC87Q9NVE4 SOS1-203ENST00000426016 8517 ntAPPRIS P2 TSL 2 BASIC4.97□□□□□ -1.61
CCDC87Q9NVE4 AL079305.1-201ENST00000623159 3008 ntBASIC4.97□□□□□ -1.61
CCDC87Q9NVE4 AKAP11-201ENST00000025301 9920 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
CCDC87Q9NVE4 CLIC2-202ENST00000369449 2655 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
CCDC87Q9NVE4 OR10J1-203ENST00000642080 3503 ntAPPRIS P1 BASIC4.97□□□□□ -1.61
CCDC87Q9NVE4 OR8D1-203ENST00000641897 8285 ntAPPRIS P1 BASIC4.96□□□□□ -1.61
CCDC87Q9NVE4 OR5K1-202ENST00000642057 3466 ntAPPRIS P1 BASIC4.96□□□□□ -1.61
CCDC87Q9NVE4 LINC01828-203ENST00000452716 3250 ntTSL 5 BASIC4.96□□□□□ -1.61
CCDC87Q9NVE4 TRDN-206ENST00000628709 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC4.96□□□□□ -1.61
CCDC87Q9NVE4 STON1-GTF2A1L-201ENST00000394751 3534 ntTSL 2 BASIC4.96□□□□□ -1.62
CCDC87Q9NVE4 IFI16-208ENST00000448393 2245 ntAPPRIS ALT2 TSL 5 BASIC4.96□□□□□ -1.62
CCDC87Q9NVE4 RNFT1-201ENST00000305783 2101 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
CCDC87Q9NVE4 PUS7L-207ENST00000551923 3313 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
CCDC87Q9NVE4 RAPGEF6-201ENST00000296859 5618 ntAPPRIS ALT2 TSL 1 (best) BASIC4.96□□□□□ -1.62
CCDC87Q9NVE4 RNU6-741P-201ENST00000383889 107 ntBASIC4.96□□□□□ -1.62
CCDC87Q9NVE4 LGALS16-201ENST00000392051 624 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
CCDC87Q9NVE4 Y_RNA.623-201ENST00000411128 95 ntBASIC4.96□□□□□ -1.62
CCDC87Q9NVE4 SNORD56-201ENST00000413522 71 ntBASIC4.96□□□□□ -1.62
CCDC87Q9NVE4 AL592148.1-201ENST00000413568 445 ntBASIC4.96□□□□□ -1.62
CCDC87Q9NVE4 GYPB-201ENST00000429670 239 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
CCDC87Q9NVE4 AC004869.2-201ENST00000436501 229 ntTSL 3 BASIC4.96□□□□□ -1.62
CCDC87Q9NVE4 AC133865.1-201ENST00000438619 339 ntTSL 3 BASIC4.96□□□□□ -1.62
CCDC87Q9NVE4 AL445465.2-201ENST00000455530 461 ntTSL 2 BASIC4.96□□□□□ -1.62
CCDC87Q9NVE4 AL136097.2-201ENST00000457003 333 ntTSL 2 BASIC4.96□□□□□ -1.62
CCDC87Q9NVE4 RPS26P28-201ENST00000470806 348 ntBASIC4.96□□□□□ -1.62
CCDC87Q9NVE4 SNORA31.8-201ENST00000516327 108 ntBASIC4.96□□□□□ -1.62
CCDC87Q9NVE4 AC022039.1-201ENST00000527110 488 ntTSL 2 BASIC4.96□□□□□ -1.62
CCDC87Q9NVE4 AC040926.1-201ENST00000530195 238 ntBASIC4.96□□□□□ -1.62
CCDC87Q9NVE4 PCED1B-AS1-208ENST00000551898 359 ntTSL 3 BASIC4.96□□□□□ -1.62
CCDC87Q9NVE4 MIR5187-201ENST00000583479 76 ntBASIC4.96□□□□□ -1.62
CCDC87Q9NVE4 VN1R91P-201ENST00000594377 169 ntBASIC4.96□□□□□ -1.62
CCDC87Q9NVE4 MIR3976-201ENST00000606807 139 ntBASIC4.96□□□□□ -1.62
CCDC87Q9NVE4 LINC01002-206ENST00000631772 539 ntTSL 4 BASIC4.96□□□□□ -1.62
CCDC87Q9NVE4 PSMD5-AS1-215ENST00000640622 205 ntBASIC4.96□□□□□ -1.62
CCDC87Q9NVE4 LINC01630-206ENST00000635103 4292 ntTSL 5 BASIC4.96□□□□□ -1.62
CCDC87Q9NVE4 RBBP6-202ENST00000348022 5739 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
CCDC87Q9NVE4 ZCCHC7-202ENST00000336755 2619 ntAPPRIS P1 TSL 2 BASIC4.96□□□□□ -1.62
CCDC87Q9NVE4 ZFHX4-207ENST00000521891 14019 ntAPPRIS P2 TSL 5 BASIC4.96□□□□□ -1.62
CCDC87Q9NVE4 SLC38A9-223ENST00000515629 2673 ntTSL 2 BASIC4.96□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 112.5 ms