Protein–RNA interactions for Protein: Q96EP1

CHFR, E3 ubiquitin-protein ligase CHFR, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHFRQ96EP1 AC116096.1-201ENST00000566804 2314 ntBASIC3.86□□□□□ -1.79
CHFRQ96EP1 HMGB1-201ENST00000326004 821 ntTSL 3 BASIC3.86□□□□□ -1.79
CHFRQ96EP1 RNU6-525P-201ENST00000363685 104 ntBASIC3.86□□□□□ -1.79
CHFRQ96EP1 Y_RNA.214-201ENST00000364201 112 ntBASIC3.86□□□□□ -1.79
CHFRQ96EP1 RNU6-806P-201ENST00000365147 105 ntBASIC3.86□□□□□ -1.79
CHFRQ96EP1 Y_RNA.424-201ENST00000384063 103 ntBASIC3.86□□□□□ -1.79
CHFRQ96EP1 Y_RNA.576-201ENST00000384781 102 ntBASIC3.86□□□□□ -1.79
CHFRQ96EP1 TRAJ17-201ENST00000390520 63 ntAPPRIS P1 BASIC3.86□□□□□ -1.79
CHFRQ96EP1 RNU6-1093P-201ENST00000391194 107 ntBASIC3.86□□□□□ -1.79
CHFRQ96EP1 AC110754.1-201ENST00000399740 601 ntBASIC3.86□□□□□ -1.79
CHFRQ96EP1 AL023807.1-201ENST00000407932 359 ntBASIC3.86□□□□□ -1.79
CHFRQ96EP1 AP000275.1-201ENST00000411943 390 ntBASIC3.86□□□□□ -1.79
CHFRQ96EP1 AC114491.1-201ENST00000416095 246 ntBASIC3.86□□□□□ -1.79
CHFRQ96EP1 ELOCP20-201ENST00000422460 345 ntBASIC3.86□□□□□ -1.79
CHFRQ96EP1 RPL7P37-201ENST00000425095 738 ntBASIC3.86□□□□□ -1.79
CHFRQ96EP1 AL606753.1-201ENST00000427435 87 ntBASIC3.86□□□□□ -1.79
CHFRQ96EP1 SNORA71B-202ENST00000439232 272 ntBASIC3.86□□□□□ -1.79
CHFRQ96EP1 AC108734.1-201ENST00000439549 399 ntBASIC3.86□□□□□ -1.79
CHFRQ96EP1 AL136097.1-201ENST00000456945 913 ntBASIC3.86□□□□□ -1.79
CHFRQ96EP1 AC104472.2-201ENST00000469035 601 ntBASIC3.86□□□□□ -1.79
CHFRQ96EP1 AC010273.2-201ENST00000479830 438 ntTSL 5 BASIC3.86□□□□□ -1.79
CHFRQ96EP1 RPL31P61-201ENST00000496160 376 ntBASIC3.86□□□□□ -1.79
CHFRQ96EP1 SNORA74D-201ENST00000516404 141 ntBASIC3.86□□□□□ -1.79
CHFRQ96EP1 AC021698.1-201ENST00000524858 716 ntTSL 3 BASIC3.86□□□□□ -1.79
CHFRQ96EP1 AC011979.2-201ENST00000527568 352 ntBASIC3.86□□□□□ -1.79
CHFRQ96EP1 AP003385.6-201ENST00000531603 374 ntBASIC3.86□□□□□ -1.79
CHFRQ96EP1 AC010175.1-201ENST00000538219 224 ntTSL 5 BASIC3.86□□□□□ -1.79
CHFRQ96EP1 SYF2P1-201ENST00000550658 413 ntBASIC3.86□□□□□ -1.79
CHFRQ96EP1 AC008056.1-201ENST00000553322 394 ntTSL 3 BASIC3.86□□□□□ -1.79
CHFRQ96EP1 GNRHR2P1-201ENST00000555315 631 ntBASIC3.86□□□□□ -1.79
CHFRQ96EP1 AL031176.1-201ENST00000604554 466 ntBASIC3.86□□□□□ -1.79
CHFRQ96EP1 ATP5A1P2-202ENST00000616464 443 ntBASIC3.86□□□□□ -1.79
CHFRQ96EP1 AC073172.1-201ENST00000636967 851 ntTSL 5 BASIC3.86□□□□□ -1.79
CHFRQ96EP1 FRYL-205ENST00000503238 11103 ntAPPRIS P1 TSL 5 BASIC3.86□□□□□ -1.79
CHFRQ96EP1 AL049781.1-201ENST00000623195 3585 ntBASIC3.86□□□□□ -1.79
CHFRQ96EP1 AL672296.1-201ENST00000427780 2158 ntBASIC3.86□□□□□ -1.79
CHFRQ96EP1 LINC02475-202ENST00000512678 2622 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
CHFRQ96EP1 CSNK1G3-203ENST00000361991 2424 ntAPPRIS P3 TSL 1 (best) BASIC3.85□□□□□ -1.79
CHFRQ96EP1 CLUL1-208ENST00000581619 2449 ntTSL 2 BASIC3.85□□□□□ -1.79
CHFRQ96EP1 SAGE4P-201ENST00000442271 3381 ntBASIC3.85□□□□□ -1.79
CHFRQ96EP1 ZNF415-207ENST00000595193 2479 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
CHFRQ96EP1 PRO1804-201ENST00000623780 2050 ntBASIC3.85□□□□□ -1.79
CHFRQ96EP1 SEC23A-202ENST00000537403 4215 ntTSL 2 BASIC3.85□□□□□ -1.79
CHFRQ96EP1 CASP1-201ENST00000353247 423 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
CHFRQ96EP1 RNU6-179P-201ENST00000363350 107 ntBASIC3.85□□□□□ -1.79
CHFRQ96EP1 RNU6-61P-201ENST00000365528 109 ntBASIC3.85□□□□□ -1.79
CHFRQ96EP1 Y_RNA.462-201ENST00000384268 102 ntBASIC3.85□□□□□ -1.79
CHFRQ96EP1 MIR491-201ENST00000384877 84 ntBASIC3.85□□□□□ -1.79
CHFRQ96EP1 RNA5SP219-201ENST00000390940 113 ntBASIC3.85□□□□□ -1.79
CHFRQ96EP1 MORN2-203ENST00000409131 544 ntTSL 5 BASIC3.85□□□□□ -1.79
CHFRQ96EP1 RNA5SP129-201ENST00000410276 118 ntBASIC3.85□□□□□ -1.79
CHFRQ96EP1 LHFPL3-AS1-203ENST00000417290 950 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
CHFRQ96EP1 GPC5-AS1-201ENST00000419288 393 ntTSL 3 BASIC3.85□□□□□ -1.79
CHFRQ96EP1 RPL7P46-201ENST00000425129 740 ntBASIC3.85□□□□□ -1.79
CHFRQ96EP1 AC091390.3-201ENST00000426478 338 ntBASIC3.85□□□□□ -1.79
CHFRQ96EP1 LINC01870-201ENST00000427042 390 ntTSL 3 BASIC3.85□□□□□ -1.79
CHFRQ96EP1 LAMTOR5P1-201ENST00000444290 270 ntBASIC3.85□□□□□ -1.79
CHFRQ96EP1 AC073910.1-201ENST00000445047 438 ntBASIC3.85□□□□□ -1.79
CHFRQ96EP1 CASP1-203ENST00000446369 948 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
CHFRQ96EP1 RPS15AP27-201ENST00000449183 343 ntBASIC3.85□□□□□ -1.79
CHFRQ96EP1 CHEK2P4-201ENST00000450340 246 ntBASIC3.85□□□□□ -1.79
CHFRQ96EP1 AC046136.1-201ENST00000459855 533 ntTSL 3 BASIC3.85□□□□□ -1.79
CHFRQ96EP1 RPL39P38-201ENST00000467018 153 ntBASIC3.85□□□□□ -1.79
CHFRQ96EP1 RPS23P3-201ENST00000470993 430 ntBASIC3.85□□□□□ -1.79
CHFRQ96EP1 AC009901.1-201ENST00000506703 541 ntBASIC3.85□□□□□ -1.79
CHFRQ96EP1 RNA5SP208-201ENST00000516156 78 ntBASIC3.85□□□□□ -1.79
CHFRQ96EP1 RNA5SP164-201ENST00000516533 110 ntBASIC3.85□□□□□ -1.79
CHFRQ96EP1 Y_RNA.715-201ENST00000517082 110 ntBASIC3.85□□□□□ -1.79
CHFRQ96EP1 CLEC2D-216ENST00000545918 288 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
CHFRQ96EP1 SETP7-201ENST00000552169 453 ntBASIC3.85□□□□□ -1.79
CHFRQ96EP1 RPL26-207ENST00000583011 524 ntAPPRIS P1 TSL 3 BASIC3.85□□□□□ -1.79
CHFRQ96EP1 MIR5692C1-201ENST00000585309 91 ntBASIC3.85□□□□□ -1.79
CHFRQ96EP1 AC092070.3-201ENST00000596041 337 ntTSL 3 BASIC3.85□□□□□ -1.79
CHFRQ96EP1 AL355376.2-201ENST00000603866 267 ntTSL 5 BASIC3.85□□□□□ -1.79
CHFRQ96EP1 Z98751.3-201ENST00000604447 521 ntBASIC3.85□□□□□ -1.79
CHFRQ96EP1 MTND4LP5-201ENST00000605152 292 ntBASIC3.85□□□□□ -1.79
CHFRQ96EP1 AL354696.2-202ENST00000620300 613 ntTSL 2 BASIC3.85□□□□□ -1.79
CHFRQ96EP1 AC025034.2-201ENST00000623264 286 ntBASIC3.85□□□□□ -1.79
CHFRQ96EP1 U6.114-201ENST00000636407 96 ntBASIC3.85□□□□□ -1.79
CHFRQ96EP1 NCAM2-201ENST00000284894 4699 ntAPPRIS ALT2 TSL 5 BASIC3.85□□□□□ -1.79
CHFRQ96EP1 DDX60L-201ENST00000260184 6754 ntAPPRIS P1 TSL 5 BASIC3.84□□□□□ -1.79
CHFRQ96EP1 CENPJ-205ENST00000545981 4299 ntTSL 2 BASIC3.84□□□□□ -1.79
CHFRQ96EP1 LRRN3-203ENST00000422987 3513 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
CHFRQ96EP1 MS4A14-201ENST00000300187 2997 ntAPPRIS P3 TSL 1 (best) BASIC3.84□□□□□ -1.79
CHFRQ96EP1 RNA5SP72-201ENST00000364442 117 ntBASIC3.84□□□□□ -1.79
CHFRQ96EP1 CLDN10-202ENST00000376855 701 ntTSL 2 BASIC3.84□□□□□ -1.79
CHFRQ96EP1 SNORA24.1-201ENST00000384401 135 ntBASIC3.84□□□□□ -1.79
CHFRQ96EP1 Y_RNA.518-201ENST00000384552 113 ntBASIC3.84□□□□□ -1.79
CHFRQ96EP1 MIR218-2-201ENST00000385006 110 ntBASIC3.84□□□□□ -1.79
CHFRQ96EP1 TRAJ18-201ENST00000390519 66 ntAPPRIS P1 BASIC3.84□□□□□ -1.79
CHFRQ96EP1 RNU2-14P-201ENST00000411053 191 ntBASIC3.84□□□□□ -1.79
CHFRQ96EP1 USMG5P1-201ENST00000425964 177 ntBASIC3.84□□□□□ -1.79
CHFRQ96EP1 AC104332.1-201ENST00000440471 797 ntBASIC3.84□□□□□ -1.79
CHFRQ96EP1 AL121871.1-201ENST00000443413 436 ntBASIC3.84□□□□□ -1.79
CHFRQ96EP1 RPS3AP46-201ENST00000448352 682 ntBASIC3.84□□□□□ -1.79
CHFRQ96EP1 TRBV26-201ENST00000456572 344 ntBASIC3.84□□□□□ -1.79
CHFRQ96EP1 SCARNA18-201ENST00000459004 134 ntBASIC3.84□□□□□ -1.79
CHFRQ96EP1 AC008155.2-201ENST00000464337 397 ntBASIC3.84□□□□□ -1.79
CHFRQ96EP1 AC021382.1-201ENST00000483523 359 ntBASIC3.84□□□□□ -1.79
CHFRQ96EP1 HMGB1P35-201ENST00000503360 598 ntBASIC3.84□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 175.8 ms