Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 RN7SKP101-201ENST00000411376 320 ntBASIC1.56□□□□□ -2.16
LMX1AQ8TE12 SPATA17-AS1-201ENST00000415765 420 ntTSL 5 BASIC1.56□□□□□ -2.16
LMX1AQ8TE12 LINC02331-201ENST00000418927 602 ntTSL 5 BASIC1.56□□□□□ -2.16
LMX1AQ8TE12 AC104653.1-201ENST00000420579 578 ntTSL 2 BASIC1.56□□□□□ -2.16
LMX1AQ8TE12 Z82205.1-201ENST00000428456 297 ntBASIC1.56□□□□□ -2.16
LMX1AQ8TE12 AC004383.1-201ENST00000438135 289 ntBASIC1.56□□□□□ -2.16
LMX1AQ8TE12 AL117336.1-201ENST00000439198 380 ntTSL 2 BASIC1.56□□□□□ -2.16
LMX1AQ8TE12 AC005094.1-201ENST00000440420 368 ntBASIC1.56□□□□□ -2.16
LMX1AQ8TE12 AC018693.1-201ENST00000442829 550 ntTSL 4 BASIC1.56□□□□□ -2.16
LMX1AQ8TE12 GJE1-201ENST00000450456 916 ntAPPRIS P1 TSL 5 BASIC1.56□□□□□ -2.16
LMX1AQ8TE12 AC099566.1-212ENST00000451675 799 ntTSL 3 BASIC1.56□□□□□ -2.16
LMX1AQ8TE12 FABP5P15-201ENST00000453566 214 ntBASIC1.56□□□□□ -2.16
LMX1AQ8TE12 CHRM3-AS2-203ENST00000458325 895 ntTSL 2 BASIC1.56□□□□□ -2.16
LMX1AQ8TE12 LINC01036-201ENST00000458683 858 ntTSL 3 BASIC1.56□□□□□ -2.16
LMX1AQ8TE12 RNU7-95P-201ENST00000459222 64 ntBASIC1.56□□□□□ -2.16
LMX1AQ8TE12 snoU109.3-201ENST00000459477 145 ntBASIC1.56□□□□□ -2.16
LMX1AQ8TE12 AC055731.1-201ENST00000474387 401 ntBASIC1.56□□□□□ -2.16
LMX1AQ8TE12 AC068781.1-201ENST00000488231 618 ntBASIC1.56□□□□□ -2.16
LMX1AQ8TE12 WDR78-207ENST00000488333 613 ntTSL 3 BASIC1.56□□□□□ -2.16
LMX1AQ8TE12 AHI1-208ENST00000488690 712 ntTSL 5 BASIC1.56□□□□□ -2.16
LMX1AQ8TE12 AC026719.1-201ENST00000506059 456 ntTSL 3 BASIC1.56□□□□□ -2.16
LMX1AQ8TE12 AC109454.3-201ENST00000512748 669 ntTSL 3 BASIC1.56□□□□□ -2.16
LMX1AQ8TE12 TRMT112P2-201ENST00000512910 132 ntBASIC1.56□□□□□ -2.16
LMX1AQ8TE12 MTND5P13-201ENST00000513046 1079 ntBASIC1.56□□□□□ -2.16
LMX1AQ8TE12 AC107909.2-201ENST00000520844 493 ntTSL 3 BASIC1.56□□□□□ -2.16
LMX1AQ8TE12 OR5AQ1P-201ENST00000527596 927 ntBASIC1.56□□□□□ -2.16
LMX1AQ8TE12 AC084851.1-201ENST00000529105 249 ntBASIC1.56□□□□□ -2.16
LMX1AQ8TE12 AC087441.2-201ENST00000529141 262 ntBASIC1.56□□□□□ -2.16
LMX1AQ8TE12 AC026771.1-201ENST00000564672 415 ntTSL 2 BASIC1.56□□□□□ -2.16
LMX1AQ8TE12 MMP2-AS1-201ENST00000565307 593 ntTSL 4 BASIC1.56□□□□□ -2.16
LMX1AQ8TE12 AC130371.1-204ENST00000576197 401 ntTSL 3 BASIC1.56□□□□□ -2.16
LMX1AQ8TE12 MIR3122-201ENST00000577243 73 ntBASIC1.56□□□□□ -2.16
LMX1AQ8TE12 AC024614.2-201ENST00000577584 372 ntBASIC1.56□□□□□ -2.16
LMX1AQ8TE12 AC022662.1-201ENST00000580252 331 ntBASIC1.56□□□□□ -2.16
LMX1AQ8TE12 AL109918.3-201ENST00000603072 338 ntBASIC1.56□□□□□ -2.16
LMX1AQ8TE12 AL096840.1-201ENST00000603287 93 ntBASIC1.56□□□□□ -2.16
LMX1AQ8TE12 FBXW7-AS1-201ENST00000605147 372 ntTSL 1 (best) BASIC1.56□□□□□ -2.16
LMX1AQ8TE12 AL592221.1-201ENST00000605266 382 ntBASIC1.56□□□□□ -2.16
LMX1AQ8TE12 PDCD6IPP1-201ENST00000615124 579 ntTSL 2 BASIC1.56□□□□□ -2.16
LMX1AQ8TE12 AC024581.2-201ENST00000619986 252 ntBASIC1.56□□□□□ -2.16
LMX1AQ8TE12 AC097655.1-201ENST00000635075 318 ntBASIC1.56□□□□□ -2.16
LMX1AQ8TE12 AL391597.2-201ENST00000635698 479 ntTSL 5 BASIC1.56□□□□□ -2.16
LMX1AQ8TE12 SERPINI2-209ENST00000616363 1769 ntTSL 5 BASIC1.56□□□□□ -2.16
LMX1AQ8TE12 EFCAB3-202ENST00000450662 1694 ntTSL 5 BASIC1.55□□□□□ -2.16
LMX1AQ8TE12 SCOC-201ENST00000338517 1864 ntTSL 4 BASIC1.55□□□□□ -2.16
LMX1AQ8TE12 RNU6-1167P-201ENST00000363227 94 ntBASIC1.55□□□□□ -2.16
LMX1AQ8TE12 Y_RNA.245-201ENST00000364493 95 ntBASIC1.55□□□□□ -2.16
LMX1AQ8TE12 KIF27-203ENST00000376347 1030 ntTSL 5 BASIC1.55□□□□□ -2.16
LMX1AQ8TE12 SNORA67.6-201ENST00000391093 99 ntBASIC1.55□□□□□ -2.16
LMX1AQ8TE12 AL359634.1-202ENST00000404721 284 ntBASIC1.55□□□□□ -2.16
LMX1AQ8TE12 RN7SKP158-201ENST00000410453 326 ntBASIC1.55□□□□□ -2.16
LMX1AQ8TE12 PIGPP2-201ENST00000411569 458 ntBASIC1.55□□□□□ -2.16
LMX1AQ8TE12 RPL26P27-201ENST00000414397 437 ntBASIC1.55□□□□□ -2.16
LMX1AQ8TE12 AIMP1P2-201ENST00000425294 312 ntBASIC1.55□□□□□ -2.16
LMX1AQ8TE12 AC003084.1-201ENST00000427030 435 ntTSL 5 BASIC1.55□□□□□ -2.16
LMX1AQ8TE12 AC093106.2-201ENST00000428212 385 ntBASIC1.55□□□□□ -2.16
LMX1AQ8TE12 AC010153.1-201ENST00000432862 727 ntBASIC1.55□□□□□ -2.16
LMX1AQ8TE12 HMGB1P31-201ENST00000437242 427 ntBASIC1.55□□□□□ -2.16
LMX1AQ8TE12 AL031313.1-201ENST00000448435 256 ntBASIC1.55□□□□□ -2.16
LMX1AQ8TE12 PAXBP1P1-201ENST00000449315 447 ntBASIC1.55□□□□□ -2.16
LMX1AQ8TE12 AL135787.1-201ENST00000450154 302 ntTSL 3 BASIC1.55□□□□□ -2.16
LMX1AQ8TE12 CECR9-201ENST00000453421 199 ntBASIC1.55□□□□□ -2.16
LMX1AQ8TE12 TSPY5P-202ENST00000456541 142 ntTSL 3 BASIC1.55□□□□□ -2.16
LMX1AQ8TE12 AC005410.1-202ENST00000460347 485 ntBASIC1.55□□□□□ -2.16
LMX1AQ8TE12 AL049829.1-201ENST00000465411 156 ntBASIC1.55□□□□□ -2.16
LMX1AQ8TE12 AL121769.1-201ENST00000469473 401 ntBASIC1.55□□□□□ -2.16
LMX1AQ8TE12 AC105343.1-201ENST00000505586 358 ntTSL 3 BASIC1.55□□□□□ -2.16
LMX1AQ8TE12 AC008526.1-201ENST00000509149 338 ntBASIC1.55□□□□□ -2.16
LMX1AQ8TE12 AC010587.2-201ENST00000511727 448 ntBASIC1.55□□□□□ -2.16
LMX1AQ8TE12 MRPS17P9-201ENST00000511924 393 ntBASIC1.55□□□□□ -2.16
LMX1AQ8TE12 RNA5SP290-201ENST00000517133 127 ntBASIC1.55□□□□□ -2.16
LMX1AQ8TE12 RNU2-19P-201ENST00000517288 84 ntBASIC1.55□□□□□ -2.16
LMX1AQ8TE12 AC118273.2-201ENST00000532092 465 ntBASIC1.55□□□□□ -2.16
LMX1AQ8TE12 MTCO2P15-201ENST00000532655 656 ntBASIC1.55□□□□□ -2.16
LMX1AQ8TE12 AC012170.2-201ENST00000560380 667 ntTSL 3 BASIC1.55□□□□□ -2.16
LMX1AQ8TE12 AC015720.1-201ENST00000565251 277 ntBASIC1.55□□□□□ -2.16
LMX1AQ8TE12 AC090897.2-201ENST00000581715 130 ntBASIC1.55□□□□□ -2.16
LMX1AQ8TE12 AC105245.1-201ENST00000581934 244 ntBASIC1.55□□□□□ -2.16
LMX1AQ8TE12 MIR4293-201ENST00000584305 78 ntBASIC1.55□□□□□ -2.16
LMX1AQ8TE12 AC012493.3-201ENST00000604494 112 ntBASIC1.55□□□□□ -2.16
LMX1AQ8TE12 AL161798.1-201ENST00000604630 131 ntBASIC1.55□□□□□ -2.16
LMX1AQ8TE12 BX248123.2-201ENST00000606318 124 ntBASIC1.55□□□□□ -2.16
LMX1AQ8TE12 AL627230.6-201ENST00000611129 280 ntBASIC1.55□□□□□ -2.16
LMX1AQ8TE12 uc_338.14-201ENST00000613162 166 ntBASIC1.55□□□□□ -2.16
LMX1AQ8TE12 OR4C15-202ENST00000642128 951 ntAPPRIS P1 BASIC1.55□□□□□ -2.16
LMX1AQ8TE12 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC1.55□□□□□ -2.16
LMX1AQ8TE12 AC009487.4-201ENST00000624969 3585 ntBASIC1.54□□□□□ -2.16
LMX1AQ8TE12 PICALM-209ENST00000528398 2049 ntTSL 2 BASIC1.54□□□□□ -2.16
LMX1AQ8TE12 AC008555.8-201ENST00000623602 2168 ntBASIC1.54□□□□□ -2.16
LMX1AQ8TE12 UBE2L2-201ENST00000254302 429 ntBASIC1.54□□□□□ -2.16
LMX1AQ8TE12 HMGB1-201ENST00000326004 821 ntTSL 3 BASIC1.54□□□□□ -2.16
LMX1AQ8TE12 RNU6-853P-201ENST00000364306 107 ntBASIC1.54□□□□□ -2.16
LMX1AQ8TE12 RNU4-68P-201ENST00000364314 141 ntBASIC1.54□□□□□ -2.16
LMX1AQ8TE12 GSTA3-202ENST00000370968 775 ntTSL 1 (best) BASIC1.54□□□□□ -2.16
LMX1AQ8TE12 AL355143.1-201ENST00000407101 841 ntBASIC1.54□□□□□ -2.16
LMX1AQ8TE12 MIR1305-201ENST00000408300 86 ntBASIC1.54□□□□□ -2.16
LMX1AQ8TE12 MIR1287-201ENST00000408492 90 ntBASIC1.54□□□□□ -2.16
LMX1AQ8TE12 RPL21P24-201ENST00000413752 448 ntBASIC1.54□□□□□ -2.16
LMX1AQ8TE12 ZNF90P2-204ENST00000419323 1075 ntBASIC1.54□□□□□ -2.16
LMX1AQ8TE12 AC083875.1-201ENST00000419509 405 ntBASIC1.54□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 103.2 ms