Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 RNU6-293P-201ENST00000411259 106 ntBASIC3.19□□□□□ -1.9
CCDC28AQ8IWP9 AC096649.2-201ENST00000416186 393 ntBASIC3.19□□□□□ -1.9
CCDC28AQ8IWP9 GRM7-AS1-201ENST00000420230 430 ntTSL 3 BASIC3.19□□□□□ -1.9
CCDC28AQ8IWP9 RPL7AP25-201ENST00000423357 805 ntBASIC3.19□□□□□ -1.9
CCDC28AQ8IWP9 AL590632.1-201ENST00000424289 371 ntBASIC3.19□□□□□ -1.9
CCDC28AQ8IWP9 AL445488.1-202ENST00000430623 545 ntTSL 3 BASIC3.19□□□□□ -1.9
CCDC28AQ8IWP9 IGKV1OR9-2-201ENST00000431378 277 ntBASIC3.19□□□□□ -1.9
CCDC28AQ8IWP9 MTND3P23-201ENST00000431980 347 ntBASIC3.19□□□□□ -1.9
CCDC28AQ8IWP9 RPS15AP10-201ENST00000432472 382 ntBASIC3.19□□□□□ -1.9
CCDC28AQ8IWP9 AC016292.1-201ENST00000438344 235 ntTSL 3 BASIC3.19□□□□□ -1.9
CCDC28AQ8IWP9 LINC01810-201ENST00000450397 411 ntTSL 3 BASIC3.19□□□□□ -1.9
CCDC28AQ8IWP9 AL354824.2-201ENST00000458004 446 ntTSL 3 BASIC3.19□□□□□ -1.9
CCDC28AQ8IWP9 RPL21P126-201ENST00000470049 478 ntBASIC3.19□□□□□ -1.9
CCDC28AQ8IWP9 TRBV12-2-201ENST00000489763 344 ntBASIC3.19□□□□□ -1.9
CCDC28AQ8IWP9 LINC02491-201ENST00000504710 403 ntTSL 2 BASIC3.19□□□□□ -1.9
CCDC28AQ8IWP9 AC126768.3-201ENST00000514519 560 ntTSL 4 BASIC3.19□□□□□ -1.9
CCDC28AQ8IWP9 AC124290.1-202ENST00000523342 387 ntTSL 3 BASIC3.19□□□□□ -1.9
CCDC28AQ8IWP9 AC078889.1-201ENST00000536412 523 ntTSL 2 BASIC3.19□□□□□ -1.9
CCDC28AQ8IWP9 AC092138.1-201ENST00000568659 472 ntTSL 2 BASIC3.19□□□□□ -1.9
CCDC28AQ8IWP9 AC015911.9-201ENST00000591634 185 ntTSL 5 BASIC3.19□□□□□ -1.9
CCDC28AQ8IWP9 C8orf59P2-201ENST00000603441 271 ntBASIC3.19□□□□□ -1.9
CCDC28AQ8IWP9 AC064836.2-201ENST00000609491 462 ntBASIC3.19□□□□□ -1.9
CCDC28AQ8IWP9 MIR1302-1-201ENST00000637932 143 ntBASIC3.19□□□□□ -1.9
CCDC28AQ8IWP9 AC112487.2-201ENST00000637950 304 ntBASIC3.19□□□□□ -1.9
CCDC28AQ8IWP9 SLC5A3-201ENST00000381151 11576 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
CCDC28AQ8IWP9 PIGN-240ENST00000639912 6530 ntTSL 5 BASIC3.19□□□□□ -1.9
CCDC28AQ8IWP9 AC004944.1-201ENST00000517807 3059 ntBASIC3.18□□□□□ -1.9
CCDC28AQ8IWP9 AC110597.3-202ENST00000583493 3289 ntTSL 5 BASIC3.18□□□□□ -1.9
CCDC28AQ8IWP9 AGR3-201ENST00000310398 749 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
CCDC28AQ8IWP9 MIR30E-201ENST00000362104 92 ntBASIC3.18□□□□□ -1.9
CCDC28AQ8IWP9 RNU6-799P-201ENST00000363567 107 ntBASIC3.18□□□□□ -1.9
CCDC28AQ8IWP9 RNU6-827P-201ENST00000365553 106 ntBASIC3.18□□□□□ -1.9
CCDC28AQ8IWP9 MIR767-201ENST00000390228 109 ntBASIC3.18□□□□□ -1.9
CCDC28AQ8IWP9 FTH1P15-201ENST00000406984 280 ntBASIC3.18□□□□□ -1.9
CCDC28AQ8IWP9 SNORA11F-201ENST00000408237 128 ntBASIC3.18□□□□□ -1.9
CCDC28AQ8IWP9 RN7SKP158-201ENST00000410453 326 ntBASIC3.18□□□□□ -1.9
CCDC28AQ8IWP9 RPL37P10-201ENST00000412884 288 ntBASIC3.18□□□□□ -1.9
CCDC28AQ8IWP9 AL365277.2-201ENST00000415255 551 ntTSL 3 BASIC3.18□□□□□ -1.9
CCDC28AQ8IWP9 AC093911.1-201ENST00000419129 552 ntTSL 4 BASIC3.18□□□□□ -1.9
CCDC28AQ8IWP9 AC013470.1-201ENST00000453438 462 ntBASIC3.18□□□□□ -1.9
CCDC28AQ8IWP9 Y_RNA.635-201ENST00000459041 101 ntBASIC3.18□□□□□ -1.9
CCDC28AQ8IWP9 MRPL42P6-201ENST00000486397 371 ntBASIC3.18□□□□□ -1.9
CCDC28AQ8IWP9 ATP5J2-209ENST00000488775 306 ntTSL 2 BASIC3.18□□□□□ -1.9
CCDC28AQ8IWP9 AC231760.1-201ENST00000498002 260 ntBASIC3.18□□□□□ -1.9
CCDC28AQ8IWP9 RPS27P27-201ENST00000498779 255 ntBASIC3.18□□□□□ -1.9
CCDC28AQ8IWP9 MTND4LP22-201ENST00000508209 276 ntBASIC3.18□□□□□ -1.9
CCDC28AQ8IWP9 LINC02494-201ENST00000509824 427 ntTSL 3 BASIC3.18□□□□□ -1.9
CCDC28AQ8IWP9 AC091887.1-201ENST00000514002 439 ntTSL 5 BASIC3.18□□□□□ -1.9
CCDC28AQ8IWP9 AC022915.1-201ENST00000521660 289 ntTSL 3 BASIC3.18□□□□□ -1.9
CCDC28AQ8IWP9 AC104237.1-201ENST00000527443 539 ntTSL 4 BASIC3.18□□□□□ -1.9
CCDC28AQ8IWP9 AC027018.1-202ENST00000534723 383 ntTSL 3 BASIC3.18□□□□□ -1.9
CCDC28AQ8IWP9 AC127894.1-201ENST00000548266 851 ntTSL 3 BASIC3.18□□□□□ -1.9
CCDC28AQ8IWP9 DNAJC8P1-201ENST00000554535 372 ntBASIC3.18□□□□□ -1.9
CCDC28AQ8IWP9 AC009754.1-201ENST00000566282 540 ntTSL 4 BASIC3.18□□□□□ -1.9
CCDC28AQ8IWP9 AC016866.2-201ENST00000585251 502 ntTSL 2 BASIC3.18□□□□□ -1.9
CCDC28AQ8IWP9 AC068790.4-201ENST00000602474 263 ntBASIC3.18□□□□□ -1.9
CCDC28AQ8IWP9 AC080078.1-201ENST00000603643 410 ntTSL 3 BASIC3.18□□□□□ -1.9
CCDC28AQ8IWP9 AC245389.1-201ENST00000605141 529 ntBASIC3.18□□□□□ -1.9
CCDC28AQ8IWP9 AL121917.1-203ENST00000605534 577 ntBASIC3.18□□□□□ -1.9
CCDC28AQ8IWP9 uc_338.13-201ENST00000618243 179 ntBASIC3.18□□□□□ -1.9
CCDC28AQ8IWP9 AL359697.1-201ENST00000624879 587 ntBASIC3.18□□□□□ -1.9
CCDC28AQ8IWP9 UBE2E2-207ENST00000628311 267 ntTSL 5 BASIC3.18□□□□□ -1.9
CCDC28AQ8IWP9 PAN3-202ENST00000399613 4940 ntAPPRIS ALT2 TSL 5 BASIC3.18□□□□□ -1.9
CCDC28AQ8IWP9 SAMD3-214ENST00000532763 3690 ntTSL 5 BASIC3.18□□□□□ -1.9
CCDC28AQ8IWP9 MME-216ENST00000615825 5523 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
CCDC28AQ8IWP9 AC093908.1-201ENST00000623125 8092 ntBASIC3.18□□□□□ -1.9
CCDC28AQ8IWP9 PTER-201ENST00000298942 3448 ntTSL 5 BASIC3.18□□□□□ -1.9
CCDC28AQ8IWP9 THEMIS-201ENST00000368248 3866 ntAPPRIS P3 TSL 1 (best) BASIC3.18□□□□□ -1.9
CCDC28AQ8IWP9 JMJD1C-210ENST00000542921 8149 ntAPPRIS ALT2 TSL 1 (best) BASIC3.17□□□□□ -1.9
CCDC28AQ8IWP9 AC073073.2-201ENST00000609827 2578 ntBASIC3.17□□□□□ -1.9
CCDC28AQ8IWP9 FAM35A-202ENST00000298786 3614 ntTSL 5 BASIC3.17□□□□□ -1.9
CCDC28AQ8IWP9 DNAJC2-201ENST00000249270 1846 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
CCDC28AQ8IWP9 AC091564.4-201ENST00000533934 2194 ntBASIC3.17□□□□□ -1.9
CCDC28AQ8IWP9 OR5P1P-201ENST00000299512 925 ntBASIC3.17□□□□□ -1.9
CCDC28AQ8IWP9 AC079741.1-201ENST00000321498 212 ntBASIC3.17□□□□□ -1.9
CCDC28AQ8IWP9 RNU4-73P-201ENST00000363164 141 ntBASIC3.17□□□□□ -1.9
CCDC28AQ8IWP9 SNORA58B-201ENST00000364259 136 ntBASIC3.17□□□□□ -1.9
CCDC28AQ8IWP9 RNA5SP139-201ENST00000364340 117 ntBASIC3.17□□□□□ -1.9
CCDC28AQ8IWP9 RNA5SP366-201ENST00000365454 123 ntBASIC3.17□□□□□ -1.9
CCDC28AQ8IWP9 RGS4-201ENST00000367906 930 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
CCDC28AQ8IWP9 Y_RNA.474-201ENST00000384341 102 ntBASIC3.17□□□□□ -1.9
CCDC28AQ8IWP9 RNU6-750P-201ENST00000390946 107 ntBASIC3.17□□□□□ -1.9
CCDC28AQ8IWP9 AL356387.2-201ENST00000422272 243 ntBASIC3.17□□□□□ -1.9
CCDC28AQ8IWP9 RPS3AP52-201ENST00000435639 297 ntBASIC3.17□□□□□ -1.9
CCDC28AQ8IWP9 AL138921.2-201ENST00000443919 578 ntTSL 5 BASIC3.17□□□□□ -1.9
CCDC28AQ8IWP9 DARS-AS1-205ENST00000444649 558 ntTSL 3 BASIC3.17□□□□□ -1.9
CCDC28AQ8IWP9 AL513533.1-201ENST00000453728 415 ntBASIC3.17□□□□□ -1.9
CCDC28AQ8IWP9 RNU6-1037P-201ENST00000459571 107 ntBASIC3.17□□□□□ -1.9
CCDC28AQ8IWP9 RPS29P19-201ENST00000479709 171 ntBASIC3.17□□□□□ -1.9
CCDC28AQ8IWP9 AK3P2-201ENST00000507976 429 ntBASIC3.17□□□□□ -1.9
CCDC28AQ8IWP9 MTCYBP40-201ENST00000509390 1135 ntBASIC3.17□□□□□ -1.9
CCDC28AQ8IWP9 LINC02269-201ENST00000509968 511 ntTSL 3 BASIC3.17□□□□□ -1.9
CCDC28AQ8IWP9 RN7SKP24-201ENST00000515888 284 ntBASIC3.17□□□□□ -1.9
CCDC28AQ8IWP9 RNU6-277P-201ENST00000516272 106 ntBASIC3.17□□□□□ -1.9
CCDC28AQ8IWP9 SNORA64.4-201ENST00000516632 81 ntBASIC3.17□□□□□ -1.9
CCDC28AQ8IWP9 ACA59.2-201ENST00000517061 156 ntBASIC3.17□□□□□ -1.9
CCDC28AQ8IWP9 IGLVIV-65-201ENST00000517313 360 ntBASIC3.17□□□□□ -1.9
CCDC28AQ8IWP9 AC136777.1-201ENST00000517765 369 ntTSL 4 BASIC3.17□□□□□ -1.9
CCDC28AQ8IWP9 AC139497.1-201ENST00000524042 501 ntTSL 5 BASIC3.17□□□□□ -1.9
CCDC28AQ8IWP9 AC010186.2-204ENST00000537668 439 ntBASIC3.17□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 108.7 ms