Protein–RNA interactions for Protein: Q6ZMZ3

SYNE3, Nesprin-3, humanhuman

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3Q6ZMZ3 GCNT4-201ENST00000322348 5554 ntAPPRIS P1 BASIC3.41□□□□□ -1.86
SYNE3Q6ZMZ3 EVI2A-201ENST00000247270 1860 ntAPPRIS P3 TSL 2 BASIC3.4□□□□□ -1.87
SYNE3Q6ZMZ3 RNU6-270P-201ENST00000364131 105 ntBASIC3.4□□□□□ -1.87
SYNE3Q6ZMZ3 RNU6-512P-201ENST00000364438 103 ntBASIC3.4□□□□□ -1.87
SYNE3Q6ZMZ3 RNU6-1283P-201ENST00000365314 105 ntBASIC3.4□□□□□ -1.87
SYNE3Q6ZMZ3 U8.9-201ENST00000365667 134 ntBASIC3.4□□□□□ -1.87
SYNE3Q6ZMZ3 S100A12-201ENST00000368737 518 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
SYNE3Q6ZMZ3 BMP5-201ENST00000370830 3952 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
SYNE3Q6ZMZ3 RNU6-1035P-201ENST00000384477 107 ntBASIC3.4□□□□□ -1.87
SYNE3Q6ZMZ3 MIR325-201ENST00000385260 98 ntBASIC3.4□□□□□ -1.87
SYNE3Q6ZMZ3 SNORA26.7-201ENST00000391288 122 ntBASIC3.4□□□□□ -1.87
SYNE3Q6ZMZ3 AL078645.1-201ENST00000414377 423 ntTSL 3 BASIC3.4□□□□□ -1.87
SYNE3Q6ZMZ3 BMS1P22-201ENST00000414726 313 ntBASIC3.4□□□□□ -1.87
SYNE3Q6ZMZ3 AC073311.1-201ENST00000420146 505 ntTSL 5 BASIC3.4□□□□□ -1.87
SYNE3Q6ZMZ3 MTCYBP8-201ENST00000422855 651 ntBASIC3.4□□□□□ -1.87
SYNE3Q6ZMZ3 ZNF863P-201ENST00000426746 417 ntBASIC3.4□□□□□ -1.87
SYNE3Q6ZMZ3 AL592045.1-201ENST00000429867 352 ntBASIC3.4□□□□□ -1.87
SYNE3Q6ZMZ3 AC104058.1-201ENST00000448028 297 ntBASIC3.4□□□□□ -1.87
SYNE3Q6ZMZ3 AL024497.2-201ENST00000457081 317 ntTSL 3 BASIC3.4□□□□□ -1.87
SYNE3Q6ZMZ3 MTCO3P38-201ENST00000468910 766 ntBASIC3.4□□□□□ -1.87
SYNE3Q6ZMZ3 FAM92A1P2-202ENST00000504766 877 ntBASIC3.4□□□□□ -1.87
SYNE3Q6ZMZ3 AC110767.1-201ENST00000508374 239 ntTSL 3 BASIC3.4□□□□□ -1.87
SYNE3Q6ZMZ3 SNORA74D-201ENST00000516404 141 ntBASIC3.4□□□□□ -1.87
SYNE3Q6ZMZ3 RNU6-1315P-201ENST00000517187 99 ntBASIC3.4□□□□□ -1.87
SYNE3Q6ZMZ3 AC103853.2-201ENST00000519805 716 ntTSL 3 BASIC3.4□□□□□ -1.87
SYNE3Q6ZMZ3 UTP23-205ENST00000520733 369 ntTSL 3 BASIC3.4□□□□□ -1.87
SYNE3Q6ZMZ3 HIF1AP1-201ENST00000553642 175 ntBASIC3.4□□□□□ -1.87
SYNE3Q6ZMZ3 AC080078.1-201ENST00000603643 410 ntTSL 3 BASIC3.4□□□□□ -1.87
SYNE3Q6ZMZ3 BNIP3P9-201ENST00000603714 553 ntBASIC3.4□□□□□ -1.87
SYNE3Q6ZMZ3 FTX_3.1-201ENST00000610451 147 ntBASIC3.4□□□□□ -1.87
SYNE3Q6ZMZ3 AC010338.1-201ENST00000621823 717 ntBASIC3.4□□□□□ -1.87
SYNE3Q6ZMZ3 U2.21-201ENST00000637295 81 ntBASIC3.4□□□□□ -1.87
SYNE3Q6ZMZ3 TDRD15-201ENST00000405799 6135 ntAPPRIS P1 TSL 2 BASIC3.39□□□□□ -1.87
SYNE3Q6ZMZ3 PRKG2-206ENST00000545647 3852 ntTSL 5 BASIC3.39□□□□□ -1.87
SYNE3Q6ZMZ3 KIAA1841-211ENST00000612149 4202 ntTSL 5 BASIC3.39□□□□□ -1.87
SYNE3Q6ZMZ3 ANKRD36BP1-202ENST00000604892 1417 ntBASIC3.39□□□□□ -1.87
SYNE3Q6ZMZ3 OR4M1-202ENST00000641200 3493 ntAPPRIS P1 BASIC3.39□□□□□ -1.87
SYNE3Q6ZMZ3 AKR1C1-201ENST00000380859 858 ntTSL 3 BASIC3.39□□□□□ -1.87
SYNE3Q6ZMZ3 Y_RNA.573-201ENST00000384763 105 ntBASIC3.39□□□□□ -1.87
SYNE3Q6ZMZ3 MIR514A2-201ENST00000385131 88 ntBASIC3.39□□□□□ -1.87
SYNE3Q6ZMZ3 MIR514A3-201ENST00000385132 88 ntBASIC3.39□□□□□ -1.87
SYNE3Q6ZMZ3 RNU6-1077P-201ENST00000410506 102 ntBASIC3.39□□□□□ -1.87
SYNE3Q6ZMZ3 MYL8P-204ENST00000431574 518 ntBASIC3.39□□□□□ -1.87
SYNE3Q6ZMZ3 GTF2IP20-201ENST00000431663 360 ntBASIC3.39□□□□□ -1.87
SYNE3Q6ZMZ3 MTND4P25-201ENST00000441039 533 ntBASIC3.39□□□□□ -1.87
SYNE3Q6ZMZ3 FABP5P13-201ENST00000452144 328 ntBASIC3.39□□□□□ -1.87
SYNE3Q6ZMZ3 RPL37P6-201ENST00000460682 294 ntBASIC3.39□□□□□ -1.87
SYNE3Q6ZMZ3 S100A11P2-201ENST00000467589 312 ntBASIC3.39□□□□□ -1.87
SYNE3Q6ZMZ3 EIF4EP3-201ENST00000498782 656 ntBASIC3.39□□□□□ -1.87
SYNE3Q6ZMZ3 RPL38P4-201ENST00000502376 214 ntBASIC3.39□□□□□ -1.87
SYNE3Q6ZMZ3 MTCO3P9-201ENST00000506989 781 ntBASIC3.39□□□□□ -1.87
SYNE3Q6ZMZ3 SNORD60.2-201ENST00000516883 86 ntBASIC3.39□□□□□ -1.87
SYNE3Q6ZMZ3 AC007536.1-201ENST00000533382 349 ntBASIC3.39□□□□□ -1.87
SYNE3Q6ZMZ3 AHI1-217ENST00000534469 680 ntTSL 3 BASIC3.39□□□□□ -1.87
SYNE3Q6ZMZ3 AC025043.1-201ENST00000558047 625 ntTSL 2 BASIC3.39□□□□□ -1.87
SYNE3Q6ZMZ3 AC020661.3-201ENST00000558101 414 ntTSL 3 BASIC3.39□□□□□ -1.87
SYNE3Q6ZMZ3 MTCO3P23-201ENST00000561363 289 ntBASIC3.39□□□□□ -1.87
SYNE3Q6ZMZ3 AC007001.1-201ENST00000590912 670 ntTSL 5 BASIC3.39□□□□□ -1.87
SYNE3Q6ZMZ3 AC113137.1-201ENST00000591869 558 ntTSL 4 BASIC3.39□□□□□ -1.87
SYNE3Q6ZMZ3 AC079610.3-201ENST00000606960 147 ntTSL 3 BASIC3.39□□□□□ -1.87
SYNE3Q6ZMZ3 AC068544.1-201ENST00000635064 248 ntTSL 5 BASIC3.39□□□□□ -1.87
SYNE3Q6ZMZ3 Z99571.1-201ENST00000636677 394 ntBASIC3.39□□□□□ -1.87
SYNE3Q6ZMZ3 C20orf24-208ENST00000639924 351 ntTSL 5 BASIC3.39□□□□□ -1.87
SYNE3Q6ZMZ3 AC010680.1-201ENST00000590024 3590 ntBASIC3.39□□□□□ -1.87
SYNE3Q6ZMZ3 AC096644.4-201ENST00000563417 2912 ntBASIC3.39□□□□□ -1.87
SYNE3Q6ZMZ3 LRRC70-201ENST00000334994 2249 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
SYNE3Q6ZMZ3 HSPA8P4-201ENST00000511877 1920 ntBASIC3.38□□□□□ -1.87
SYNE3Q6ZMZ3 MAPK10-322ENST00000641485 4530 ntBASIC3.38□□□□□ -1.87
SYNE3Q6ZMZ3 MBNL3-205ENST00000370857 8760 ntTSL 5 BASIC3.38□□□□□ -1.87
SYNE3Q6ZMZ3 GRAMD1C-202ENST00000440446 3475 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
SYNE3Q6ZMZ3 CBLL1-201ENST00000222597 2003 ntAPPRIS ALT1 TSL 1 (best) BASIC3.38□□□□□ -1.87
SYNE3Q6ZMZ3 SYTL2-230ENST00000634661 6672 ntTSL 5 BASIC3.38□□□□□ -1.87
SYNE3Q6ZMZ3 IL36B-202ENST00000327407 1052 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
SYNE3Q6ZMZ3 FTLP6-201ENST00000355274 422 ntBASIC3.38□□□□□ -1.87
SYNE3Q6ZMZ3 RNU1-35P-201ENST00000362782 153 ntBASIC3.38□□□□□ -1.87
SYNE3Q6ZMZ3 RNU6-140P-201ENST00000384566 108 ntBASIC3.38□□□□□ -1.87
SYNE3Q6ZMZ3 MIR301A-201ENST00000385261 86 ntBASIC3.38□□□□□ -1.87
SYNE3Q6ZMZ3 CISD1P1-201ENST00000393907 327 ntBASIC3.38□□□□□ -1.87
SYNE3Q6ZMZ3 HIST1H2APS3-201ENST00000403259 134 ntBASIC3.38□□□□□ -1.87
SYNE3Q6ZMZ3 RNA5SP38-201ENST00000410750 119 ntBASIC3.38□□□□□ -1.87
SYNE3Q6ZMZ3 AC051618.1-201ENST00000414295 207 ntTSL 3 BASIC3.38□□□□□ -1.87
SYNE3Q6ZMZ3 EEF1A1P41-201ENST00000414667 207 ntBASIC3.38□□□□□ -1.87
SYNE3Q6ZMZ3 GPM6BP2-201ENST00000432046 144 ntBASIC3.38□□□□□ -1.87
SYNE3Q6ZMZ3 SNRPEP9-201ENST00000436794 238 ntBASIC3.38□□□□□ -1.87
SYNE3Q6ZMZ3 TRAPPC2P3-201ENST00000443200 321 ntBASIC3.38□□□□□ -1.87
SYNE3Q6ZMZ3 GPM6BP1-201ENST00000446387 144 ntBASIC3.38□□□□□ -1.87
SYNE3Q6ZMZ3 PLCH1-AS2-201ENST00000472913 408 ntTSL 2 BASIC3.38□□□□□ -1.87
SYNE3Q6ZMZ3 AC074124.1-201ENST00000502368 375 ntTSL 3 BASIC3.38□□□□□ -1.87
SYNE3Q6ZMZ3 AC079467.1-201ENST00000508512 503 ntTSL 3 BASIC3.38□□□□□ -1.87
SYNE3Q6ZMZ3 AC006445.2-201ENST00000510061 472 ntBASIC3.38□□□□□ -1.87
SYNE3Q6ZMZ3 HTN3-202ENST00000526767 578 ntAPPRIS P2 TSL 1 (best) BASIC3.38□□□□□ -1.87
SYNE3Q6ZMZ3 AL137161.1-201ENST00000532231 390 ntBASIC3.38□□□□□ -1.87
SYNE3Q6ZMZ3 AC068205.1-204ENST00000532989 481 ntTSL 3 BASIC3.38□□□□□ -1.87
SYNE3Q6ZMZ3 MIR3609-201ENST00000582661 80 ntBASIC3.38□□□□□ -1.87
SYNE3Q6ZMZ3 HNRNPDLP4-201ENST00000605144 301 ntBASIC3.38□□□□□ -1.87
SYNE3Q6ZMZ3 AC068831.7-201ENST00000616954 363 ntBASIC3.38□□□□□ -1.87
SYNE3Q6ZMZ3 AC024940.5-201ENST00000622889 474 ntBASIC3.38□□□□□ -1.87
SYNE3Q6ZMZ3 AC215522.3-201ENST00000635602 354 ntTSL 5 BASIC3.38□□□□□ -1.87
SYNE3Q6ZMZ3 LEPR-202ENST00000349533 8227 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
SYNE3Q6ZMZ3 LIPI-203ENST00000536861 1529 ntAPPRIS ALT2 TSL 1 (best) BASIC3.38□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 99.6 ms