Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 TLK1-206ENST00000434911 2156 ntTSL 2 BASIC2.46□□□□□ -2.02
CCDC40Q4G0X9 HSPE1P11-201ENST00000339579 310 ntBASIC2.46□□□□□ -2.02
CCDC40Q4G0X9 RNU5F-7P-201ENST00000363696 115 ntBASIC2.46□□□□□ -2.02
CCDC40Q4G0X9 RNU5E-5P-201ENST00000365379 116 ntBASIC2.46□□□□□ -2.02
CCDC40Q4G0X9 AL356277.3-201ENST00000432484 618 ntTSL 3 BASIC2.46□□□□□ -2.02
CCDC40Q4G0X9 AC018634.1-201ENST00000437554 401 ntBASIC2.46□□□□□ -2.02
CCDC40Q4G0X9 LINC01758-201ENST00000448001 458 ntTSL 3 BASIC2.46□□□□□ -2.02
CCDC40Q4G0X9 DYNLL1P5-201ENST00000467158 270 ntBASIC2.46□□□□□ -2.02
CCDC40Q4G0X9 AC010587.1-201ENST00000505809 469 ntBASIC2.46□□□□□ -2.02
CCDC40Q4G0X9 RNA5SP281-201ENST00000516504 135 ntBASIC2.46□□□□□ -2.02
CCDC40Q4G0X9 AP003122.4-201ENST00000530980 758 ntBASIC2.46□□□□□ -2.02
CCDC40Q4G0X9 AC136188.1-201ENST00000546770 342 ntTSL 3 BASIC2.46□□□□□ -2.02
CCDC40Q4G0X9 AC090531.1-202ENST00000548450 499 ntTSL 3 BASIC2.46□□□□□ -2.02
CCDC40Q4G0X9 LINC00933-203ENST00000559812 219 ntBASIC2.46□□□□□ -2.02
CCDC40Q4G0X9 AC090616.2-202ENST00000584248 222 ntBASIC2.46□□□□□ -2.02
CCDC40Q4G0X9 AL353778.1-201ENST00000603149 408 ntBASIC2.46□□□□□ -2.02
CCDC40Q4G0X9 AP002360.4-201ENST00000606980 481 ntBASIC2.46□□□□□ -2.02
CCDC40Q4G0X9 MIR15A-201ENST00000607334 83 ntBASIC2.46□□□□□ -2.02
CCDC40Q4G0X9 AC008781.3-201ENST00000622826 335 ntTSL 2 BASIC2.46□□□□□ -2.02
CCDC40Q4G0X9 EFCAB3-202ENST00000450662 1694 ntTSL 5 BASIC2.46□□□□□ -2.02
CCDC40Q4G0X9 CEP57-213ENST00000541150 2911 ntAPPRIS ALT2 TSL 5 BASIC2.45□□□□□ -2.02
CCDC40Q4G0X9 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC2.45□□□□□ -2.02
CCDC40Q4G0X9 ANKRD36BP1-202ENST00000604892 1417 ntBASIC2.45□□□□□ -2.02
CCDC40Q4G0X9 RNA5SP289-201ENST00000362332 137 ntBASIC2.45□□□□□ -2.02
CCDC40Q4G0X9 SNORD56.2-201ENST00000363242 71 ntBASIC2.45□□□□□ -2.02
CCDC40Q4G0X9 RNU6-898P-201ENST00000365627 104 ntBASIC2.45□□□□□ -2.02
CCDC40Q4G0X9 C6orf62-201ENST00000378102 741 ntTSL 5 BASIC2.45□□□□□ -2.02
CCDC40Q4G0X9 SNORA40C-201ENST00000391285 128 ntBASIC2.45□□□□□ -2.02
CCDC40Q4G0X9 UBE2V1P2-201ENST00000397758 440 ntBASIC2.45□□□□□ -2.02
CCDC40Q4G0X9 RNU6-1025P-201ENST00000410629 104 ntBASIC2.45□□□□□ -2.02
CCDC40Q4G0X9 AFDN-AS1-202ENST00000417244 182 ntTSL 2 BASIC2.45□□□□□ -2.02
CCDC40Q4G0X9 BX276092.3-201ENST00000424182 230 ntBASIC2.45□□□□□ -2.02
CCDC40Q4G0X9 AC064852.1-201ENST00000427571 851 ntTSL 3 BASIC2.45□□□□□ -2.02
CCDC40Q4G0X9 AL592466.1-201ENST00000428346 307 ntTSL 5 BASIC2.45□□□□□ -2.02
CCDC40Q4G0X9 AL024508.1-201ENST00000432477 505 ntTSL 2 BASIC2.45□□□□□ -2.02
CCDC40Q4G0X9 AC119618.1-201ENST00000434191 222 ntBASIC2.45□□□□□ -2.02
CCDC40Q4G0X9 LINC01766-201ENST00000453968 362 ntTSL 3 BASIC2.45□□□□□ -2.02
CCDC40Q4G0X9 AC080013.2-201ENST00000460866 323 ntBASIC2.45□□□□□ -2.02
CCDC40Q4G0X9 UBE2DNL-203ENST00000474922 222 ntBASIC2.45□□□□□ -2.02
CCDC40Q4G0X9 AC079804.2-201ENST00000490376 200 ntBASIC2.45□□□□□ -2.02
CCDC40Q4G0X9 AKIRIN2P1-201ENST00000505898 352 ntBASIC2.45□□□□□ -2.02
CCDC40Q4G0X9 AC116655.1-201ENST00000508324 901 ntBASIC2.45□□□□□ -2.02
CCDC40Q4G0X9 AC110767.1-201ENST00000508374 239 ntTSL 3 BASIC2.45□□□□□ -2.02
CCDC40Q4G0X9 APELA-204ENST00000515275 551 ntAPPRIS P1 TSL 3 BASIC2.45□□□□□ -2.02
CCDC40Q4G0X9 Y_RNA.689-201ENST00000516589 107 ntBASIC2.45□□□□□ -2.02
CCDC40Q4G0X9 AC021242.2-203ENST00000521842 687 ntTSL 3 BASIC2.45□□□□□ -2.02
CCDC40Q4G0X9 OR5B19P-201ENST00000531766 928 ntBASIC2.45□□□□□ -2.02
CCDC40Q4G0X9 AC093012.1-201ENST00000552999 446 ntTSL 3 BASIC2.45□□□□□ -2.02
CCDC40Q4G0X9 AL157871.3-201ENST00000557231 293 ntBASIC2.45□□□□□ -2.02
CCDC40Q4G0X9 AC066612.2-201ENST00000559875 695 ntTSL 2 BASIC2.45□□□□□ -2.02
CCDC40Q4G0X9 RPS3AP23-202ENST00000574601 686 ntBASIC2.45□□□□□ -2.02
CCDC40Q4G0X9 MIR1273C-201ENST00000578669 77 ntBASIC2.45□□□□□ -2.02
CCDC40Q4G0X9 AC005357.2-201ENST00000586473 583 ntTSL 2 BASIC2.45□□□□□ -2.02
CCDC40Q4G0X9 GALNT1-205ENST00000591081 1120 ntTSL 1 (best) BASIC2.45□□□□□ -2.02
CCDC40Q4G0X9 AC069294.1-201ENST00000608397 350 ntBASIC2.45□□□□□ -2.02
CCDC40Q4G0X9 GPR171-203ENST00000617554 960 ntAPPRIS P1 BASIC2.45□□□□□ -2.02
CCDC40Q4G0X9 AC009878.1-201ENST00000621819 340 ntBASIC2.45□□□□□ -2.02
CCDC40Q4G0X9 Clostridiales-1.3-201ENST00000637703 147 ntBASIC2.45□□□□□ -2.02
CCDC40Q4G0X9 ANP32E-209ENST00000616917 2989 ntTSL 2 BASIC2.45□□□□□ -2.02
CCDC40Q4G0X9 NEDD4-205ENST00000506154 6751 ntTSL 1 (best) BASIC2.44□□□□□ -2.02
CCDC40Q4G0X9 WWP1-201ENST00000265428 3362 ntAPPRIS P1 TSL 1 (best) BASIC2.44□□□□□ -2.02
CCDC40Q4G0X9 SNORA3A-201ENST00000364113 130 ntBASIC2.44□□□□□ -2.02
CCDC40Q4G0X9 RNU6-1280P-201ENST00000365211 107 ntBASIC2.44□□□□□ -2.02
CCDC40Q4G0X9 RNU6-748P-201ENST00000384648 107 ntBASIC2.44□□□□□ -2.02
CCDC40Q4G0X9 SNORA67.4-201ENST00000384688 142 ntBASIC2.44□□□□□ -2.02
CCDC40Q4G0X9 MIR518D-201ENST00000385014 87 ntBASIC2.44□□□□□ -2.02
CCDC40Q4G0X9 MIR221-201ENST00000385135 110 ntBASIC2.44□□□□□ -2.02
CCDC40Q4G0X9 BCL2L15-203ENST00000393320 276 ntTSL 1 (best) BASIC2.44□□□□□ -2.02
CCDC40Q4G0X9 TEX41-202ENST00000414256 604 ntTSL 5 BASIC2.44□□□□□ -2.02
CCDC40Q4G0X9 LINC01717-201ENST00000415754 527 ntTSL 5 BASIC2.44□□□□□ -2.02
CCDC40Q4G0X9 AL445989.1-202ENST00000418943 776 ntTSL 2 BASIC2.44□□□□□ -2.02
CCDC40Q4G0X9 LINC02559-201ENST00000420391 188 ntTSL 2 BASIC2.44□□□□□ -2.02
CCDC40Q4G0X9 AC007283.2-201ENST00000424739 197 ntBASIC2.44□□□□□ -2.02
CCDC40Q4G0X9 AL356583.2-201ENST00000426536 280 ntBASIC2.44□□□□□ -2.02
CCDC40Q4G0X9 RPL23AP30-201ENST00000432419 501 ntBASIC2.44□□□□□ -2.02
CCDC40Q4G0X9 UBE2D3P1-201ENST00000436669 444 ntBASIC2.44□□□□□ -2.02
CCDC40Q4G0X9 AC020594.1-201ENST00000437680 338 ntTSL 3 BASIC2.44□□□□□ -2.02
CCDC40Q4G0X9 NFIA-AS1-201ENST00000442027 384 ntTSL 2 BASIC2.44□□□□□ -2.02
CCDC40Q4G0X9 AL078601.1-201ENST00000444542 271 ntBASIC2.44□□□□□ -2.02
CCDC40Q4G0X9 SNORA59A-201ENST00000459326 152 ntBASIC2.44□□□□□ -2.02
CCDC40Q4G0X9 RPS3AP22-201ENST00000488297 769 ntBASIC2.44□□□□□ -2.02
CCDC40Q4G0X9 AC023194.1-201ENST00000493084 308 ntBASIC2.44□□□□□ -2.02
CCDC40Q4G0X9 FAM92A1P2-202ENST00000504766 877 ntBASIC2.44□□□□□ -2.02
CCDC40Q4G0X9 ACA59.2-201ENST00000517061 156 ntBASIC2.44□□□□□ -2.02
CCDC40Q4G0X9 AC068992.1-202ENST00000519280 270 ntTSL 3 BASIC2.44□□□□□ -2.02
CCDC40Q4G0X9 AC105245.1-201ENST00000581934 244 ntBASIC2.44□□□□□ -2.02
CCDC40Q4G0X9 MIR4672-201ENST00000583126 81 ntBASIC2.44□□□□□ -2.02
CCDC40Q4G0X9 AL022161.1-201ENST00000604390 213 ntBASIC2.44□□□□□ -2.02
CCDC40Q4G0X9 LINC02112-205ENST00000606744 236 ntTSL 1 (best) BASIC2.44□□□□□ -2.02
CCDC40Q4G0X9 TANK-201ENST00000259075 2152 ntAPPRIS P1 TSL 1 (best) BASIC2.44□□□□□ -2.02
CCDC40Q4G0X9 GPR22-201ENST00000304402 2942 ntAPPRIS P1 TSL 1 (best) BASIC2.44□□□□□ -2.02
CCDC40Q4G0X9 AL596028.1-201ENST00000326971 197 ntBASIC2.43□□□□□ -2.02
CCDC40Q4G0X9 Y_RNA.33-201ENST00000362591 102 ntBASIC2.43□□□□□ -2.02
CCDC40Q4G0X9 RNU6-486P-201ENST00000363116 107 ntBASIC2.43□□□□□ -2.02
CCDC40Q4G0X9 RNA5SP125-201ENST00000364843 120 ntBASIC2.43□□□□□ -2.02
CCDC40Q4G0X9 EQTN-201ENST00000380031 725 ntAPPRIS ALT2 TSL 1 (best) BASIC2.43□□□□□ -2.02
CCDC40Q4G0X9 RNU6-301P-201ENST00000384277 107 ntBASIC2.43□□□□□ -2.02
CCDC40Q4G0X9 RNU6-166P-201ENST00000384371 107 ntBASIC2.43□□□□□ -2.02
CCDC40Q4G0X9 MRPL42P2-201ENST00000403169 426 ntBASIC2.43□□□□□ -2.02
CCDC40Q4G0X9 U6atac.2-201ENST00000408644 118 ntBASIC2.43□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 106.3 ms