Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 RNU1-61P-201ENST00000516107 151 ntBASIC2.79□□□□□ -1.96
HOXA1P49639 LINC02293-201ENST00000548335 574 ntTSL 5 BASIC2.79□□□□□ -1.96
HOXA1P49639 MIR3160-1-201ENST00000577972 85 ntBASIC2.79□□□□□ -1.96
HOXA1P49639 AC011933.3-201ENST00000578226 372 ntTSL 1 (best) BASIC2.79□□□□□ -1.96
HOXA1P49639 AP001496.1-201ENST00000579113 471 ntTSL 4 BASIC2.79□□□□□ -1.96
HOXA1P49639 AL670379.10-201ENST00000604330 253 ntBASIC2.79□□□□□ -1.96
HOXA1P49639 AL670379.9-201ENST00000605428 253 ntBASIC2.79□□□□□ -1.96
HOXA1P49639 RPL23AP88-201ENST00000605759 454 ntBASIC2.79□□□□□ -1.96
HOXA1P49639 RNU1-30P-201ENST00000606575 163 ntBASIC2.79□□□□□ -1.96
HOXA1P49639 HTN1-205ENST00000610341 536 ntAPPRIS P1 TSL 1 (best) BASIC2.79□□□□□ -1.96
HOXA1P49639 AC105265.4-201ENST00000618391 306 ntTSL 5 BASIC2.79□□□□□ -1.96
HOXA1P49639 U4.6-201ENST00000621618 127 ntBASIC2.79□□□□□ -1.96
HOXA1P49639 AC027309.3-201ENST00000623419 351 ntBASIC2.79□□□□□ -1.96
HOXA1P49639 AC022418.1-201ENST00000624118 445 ntBASIC2.79□□□□□ -1.96
HOXA1P49639 FAM35A-202ENST00000298786 3614 ntTSL 5 BASIC2.79□□□□□ -1.96
HOXA1P49639 MFSD8-233ENST00000641482 4860 ntBASIC2.79□□□□□ -1.96
HOXA1P49639 OR10AG1-202ENST00000641071 2807 ntAPPRIS P1 BASIC2.78□□□□□ -1.96
HOXA1P49639 THOC2-201ENST00000245838 5609 ntAPPRIS P1 TSL 5 BASIC2.78□□□□□ -1.96
HOXA1P49639 LINC01376-202ENST00000424895 1949 ntTSL 2 BASIC2.78□□□□□ -1.96
HOXA1P49639 AL049641.1-201ENST00000441055 1948 ntBASIC2.78□□□□□ -1.96
HOXA1P49639 MUM1L1-203ENST00000372552 3957 ntAPPRIS P1 TSL 5 BASIC2.78□□□□□ -1.96
HOXA1P49639 AC138393.1-203ENST00000327086 343 ntBASIC2.78□□□□□ -1.96
HOXA1P49639 KRTAP15-1-201ENST00000334067 671 ntAPPRIS P1 BASIC2.78□□□□□ -1.96
HOXA1P49639 Y_RNA.100-201ENST00000363141 102 ntBASIC2.78□□□□□ -1.96
HOXA1P49639 U3.12-201ENST00000364498 214 ntBASIC2.78□□□□□ -1.96
HOXA1P49639 Y_RNA.414-201ENST00000384011 101 ntBASIC2.78□□□□□ -1.96
HOXA1P49639 RNU6-434P-201ENST00000384376 107 ntBASIC2.78□□□□□ -1.96
HOXA1P49639 RNU6-140P-201ENST00000384566 108 ntBASIC2.78□□□□□ -1.96
HOXA1P49639 MTND3P8-201ENST00000412909 339 ntBASIC2.78□□□□□ -1.96
HOXA1P49639 AC051618.1-201ENST00000414295 207 ntTSL 3 BASIC2.78□□□□□ -1.96
HOXA1P49639 AL356968.1-201ENST00000416622 474 ntBASIC2.78□□□□□ -1.96
HOXA1P49639 C1orf195-201ENST00000424792 255 ntTSL 2 BASIC2.78□□□□□ -1.96
HOXA1P49639 MTCO3P46-201ENST00000425787 232 ntBASIC2.78□□□□□ -1.96
HOXA1P49639 AC005160.1-201ENST00000432405 381 ntTSL 3 BASIC2.78□□□□□ -1.96
HOXA1P49639 AL024508.1-201ENST00000432477 505 ntTSL 2 BASIC2.78□□□□□ -1.96
HOXA1P49639 PLCE1-AS2-203ENST00000433038 396 ntTSL 2 BASIC2.78□□□□□ -1.96
HOXA1P49639 AC073063.1-201ENST00000434352 607 ntBASIC2.78□□□□□ -1.96
HOXA1P49639 AL033504.1-204ENST00000434985 413 ntTSL 2 BASIC2.78□□□□□ -1.96
HOXA1P49639 AC007179.2-207ENST00000435557 556 ntTSL 4 BASIC2.78□□□□□ -1.96
HOXA1P49639 AC093579.1-201ENST00000439455 352 ntTSL 2 BASIC2.78□□□□□ -1.96
HOXA1P49639 RPS29P7-201ENST00000439662 171 ntBASIC2.78□□□□□ -1.96
HOXA1P49639 LINC00302-201ENST00000444515 302 ntTSL 1 (best) BASIC2.78□□□□□ -1.96
HOXA1P49639 AC008264.1-201ENST00000447612 367 ntBASIC2.78□□□□□ -1.96
HOXA1P49639 AL109763.1-201ENST00000455391 461 ntTSL 2 BASIC2.78□□□□□ -1.96
HOXA1P49639 RNU7-167P-201ENST00000459160 62 ntBASIC2.78□□□□□ -1.96
HOXA1P49639 AC104472.2-201ENST00000469035 601 ntBASIC2.78□□□□□ -1.96
HOXA1P49639 AC106892.1-201ENST00000491608 406 ntTSL 3 BASIC2.78□□□□□ -1.96
HOXA1P49639 HIGD1AP13-201ENST00000509878 289 ntBASIC2.78□□□□□ -1.96
HOXA1P49639 AC016556.1-201ENST00000510004 935 ntTSL 2 BASIC2.78□□□□□ -1.96
HOXA1P49639 MEPE-206ENST00000511670 550 ntTSL 4 BASIC2.78□□□□□ -1.96
HOXA1P49639 RNU6-1088P-201ENST00000516850 104 ntBASIC2.78□□□□□ -1.96
HOXA1P49639 AC090136.1-201ENST00000520009 240 ntBASIC2.78□□□□□ -1.96
HOXA1P49639 AC025755.1-201ENST00000521306 278 ntBASIC2.78□□□□□ -1.96
HOXA1P49639 AC022690.1-201ENST00000526681 550 ntBASIC2.78□□□□□ -1.96
HOXA1P49639 AC087241.2-201ENST00000535801 324 ntBASIC2.78□□□□□ -1.96
HOXA1P49639 AL352979.2-201ENST00000556988 366 ntTSL 3 BASIC2.78□□□□□ -1.96
HOXA1P49639 RPS3AP23-202ENST00000574601 686 ntBASIC2.78□□□□□ -1.96
HOXA1P49639 MIR5685-201ENST00000579080 79 ntBASIC2.78□□□□□ -1.96
HOXA1P49639 FGF7P1-201ENST00000582820 288 ntBASIC2.78□□□□□ -1.96
HOXA1P49639 AC005498.1-201ENST00000592125 465 ntBASIC2.78□□□□□ -1.96
HOXA1P49639 AL117336.2-201ENST00000602435 335 ntBASIC2.78□□□□□ -1.96
HOXA1P49639 AL512625.3-207ENST00000609749 477 ntTSL 3 BASIC2.78□□□□□ -1.96
HOXA1P49639 AC103705.1-201ENST00000619013 241 ntBASIC2.78□□□□□ -1.96
HOXA1P49639 AC022140.2-201ENST00000623500 188 ntBASIC2.78□□□□□ -1.96
HOXA1P49639 SEPT14P19-202ENST00000632397 370 ntTSL 3 BASIC2.78□□□□□ -1.96
HOXA1P49639 ZNF83-201ENST00000301096 2599 ntAPPRIS P1 TSL 3 BASIC2.78□□□□□ -1.96
HOXA1P49639 LCOR-205ENST00000421806 16004 ntTSL 3 BASIC2.78□□□□□ -1.96
HOXA1P49639 ATP8A2P2-201ENST00000437678 1568 ntBASIC2.78□□□□□ -1.96
HOXA1P49639 KNTC1-204ENST00000436959 2412 ntTSL 2 BASIC2.78□□□□□ -1.97
HOXA1P49639 ESF1-202ENST00000617257 1470 ntTSL 5 BASIC2.77□□□□□ -1.97
HOXA1P49639 ZNF807-201ENST00000328088 1707 ntBASIC2.77□□□□□ -1.97
HOXA1P49639 BMP5-201ENST00000370830 3952 ntAPPRIS P1 TSL 1 (best) BASIC2.77□□□□□ -1.97
HOXA1P49639 PRKACB-217ENST00000610457 4206 ntTSL 2 BASIC2.77□□□□□ -1.97
HOXA1P49639 Y_RNA.33-201ENST00000362591 102 ntBASIC2.77□□□□□ -1.97
HOXA1P49639 RNU6-797P-201ENST00000363101 109 ntBASIC2.77□□□□□ -1.97
HOXA1P49639 RNU6-270P-201ENST00000364131 105 ntBASIC2.77□□□□□ -1.97
HOXA1P49639 S100A12-201ENST00000368737 518 ntAPPRIS P1 TSL 1 (best) BASIC2.77□□□□□ -1.97
HOXA1P49639 RAP1BP3-201ENST00000407180 549 ntBASIC2.77□□□□□ -1.97
HOXA1P49639 RNA5SP492-201ENST00000411330 114 ntBASIC2.77□□□□□ -1.97
HOXA1P49639 LINC01737-201ENST00000412647 403 ntTSL 1 (best) BASIC2.77□□□□□ -1.97
HOXA1P49639 AC003092.1-201ENST00000415536 639 ntTSL 3 BASIC2.77□□□□□ -1.97
HOXA1P49639 ATG3P1-201ENST00000419507 911 ntBASIC2.77□□□□□ -1.97
HOXA1P49639 AC099548.1-201ENST00000421443 426 ntBASIC2.77□□□□□ -1.97
HOXA1P49639 ZNF863P-201ENST00000426746 417 ntBASIC2.77□□□□□ -1.97
HOXA1P49639 AL731684.2-201ENST00000426839 333 ntTSL 5 BASIC2.77□□□□□ -1.97
HOXA1P49639 GYPB-201ENST00000429670 239 ntTSL 1 (best) BASIC2.77□□□□□ -1.97
HOXA1P49639 SNRPEP9-201ENST00000436794 238 ntBASIC2.77□□□□□ -1.97
HOXA1P49639 AL136234.1-201ENST00000437080 349 ntTSL 2 BASIC2.77□□□□□ -1.97
HOXA1P49639 AC093019.1-201ENST00000443135 252 ntBASIC2.77□□□□□ -1.97
HOXA1P49639 OARD1-209ENST00000471367 401 ntTSL 2 BASIC2.77□□□□□ -1.97
HOXA1P49639 RPL30P5-201ENST00000494923 336 ntBASIC2.77□□□□□ -1.97
HOXA1P49639 TRBVA-201ENST00000498804 316 ntBASIC2.77□□□□□ -1.97
HOXA1P49639 AC096736.2-201ENST00000507972 175 ntTSL 3 BASIC2.77□□□□□ -1.97
HOXA1P49639 AC026402.1-201ENST00000513642 170 ntBASIC2.77□□□□□ -1.97
HOXA1P49639 SNORA19.2-201ENST00000516013 114 ntBASIC2.77□□□□□ -1.97
HOXA1P49639 RN7SKP256-201ENST00000517201 314 ntBASIC2.77□□□□□ -1.97
HOXA1P49639 RNA5SP291-201ENST00000517222 105 ntBASIC2.77□□□□□ -1.97
HOXA1P49639 AC105999.1-201ENST00000518722 473 ntTSL 3 BASIC2.77□□□□□ -1.97
HOXA1P49639 AC090592.1-203ENST00000533942 575 ntTSL 3 BASIC2.77□□□□□ -1.97
HOXA1P49639 HSPE1P20-201ENST00000538133 289 ntBASIC2.77□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 96.1 ms