Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 MIR181B1-201ENST00000385240 110 ntBASIC2.63□□□□□ -1.99
NKX3-1Q99801 RPL5P18-201ENST00000406671 891 ntBASIC2.63□□□□□ -1.99
NKX3-1Q99801 RNA5SP274-201ENST00000410484 108 ntBASIC2.63□□□□□ -1.99
NKX3-1Q99801 Z92545.1-201ENST00000411782 234 ntBASIC2.63□□□□□ -1.99
NKX3-1Q99801 AL109924.3-201ENST00000413324 393 ntTSL 2 BASIC2.63□□□□□ -1.99
NKX3-1Q99801 USP9YP6-201ENST00000413550 854 ntBASIC2.63□□□□□ -1.99
NKX3-1Q99801 AC051618.1-201ENST00000414295 207 ntTSL 3 BASIC2.63□□□□□ -1.99
NKX3-1Q99801 BMS1P22-201ENST00000414726 313 ntBASIC2.63□□□□□ -1.99
NKX3-1Q99801 AC080125.1-201ENST00000414888 684 ntBASIC2.63□□□□□ -1.99
NKX3-1Q99801 AC011243.1-201ENST00000420184 415 ntTSL 3 BASIC2.63□□□□□ -1.99
NKX3-1Q99801 AC016710.1-201ENST00000421326 466 ntTSL 3 BASIC2.63□□□□□ -1.99
NKX3-1Q99801 AL139281.1-201ENST00000422120 335 ntBASIC2.63□□□□□ -1.99
NKX3-1Q99801 MTCO1P20-201ENST00000425366 358 ntBASIC2.63□□□□□ -1.99
NKX3-1Q99801 GTF2IP20-201ENST00000431663 360 ntBASIC2.63□□□□□ -1.99
NKX3-1Q99801 AL137789.1-201ENST00000439443 682 ntTSL 3 BASIC2.63□□□□□ -1.99
NKX3-1Q99801 AL714022.1-201ENST00000439897 151 ntBASIC2.63□□□□□ -1.99
NKX3-1Q99801 AL136972.1-201ENST00000443471 351 ntTSL 3 BASIC2.63□□□□□ -1.99
NKX3-1Q99801 AL020998.1-201ENST00000444923 229 ntTSL 3 BASIC2.63□□□□□ -1.99
NKX3-1Q99801 AC104058.1-201ENST00000448028 297 ntBASIC2.63□□□□□ -1.99
NKX3-1Q99801 DPPA3P1-201ENST00000448050 469 ntBASIC2.63□□□□□ -1.99
NKX3-1Q99801 AL078587.1-201ENST00000448580 542 ntTSL 5 BASIC2.63□□□□□ -1.99
NKX3-1Q99801 RNU6-261P-201ENST00000459506 102 ntBASIC2.63□□□□□ -1.99
NKX3-1Q99801 RN7SL504P-201ENST00000494496 287 ntBASIC2.63□□□□□ -1.99
NKX3-1Q99801 PANCR-202ENST00000513690 448 ntTSL 2 BASIC2.63□□□□□ -1.99
NKX3-1Q99801 RNU6-1281P-201ENST00000516223 105 ntBASIC2.63□□□□□ -1.99
NKX3-1Q99801 AC025755.1-201ENST00000521306 278 ntBASIC2.63□□□□□ -1.99
NKX3-1Q99801 AC021242.2-203ENST00000521842 687 ntTSL 3 BASIC2.63□□□□□ -1.99
NKX3-1Q99801 AC090124.2-201ENST00000527727 563 ntTSL 4 BASIC2.63□□□□□ -1.99
NKX3-1Q99801 LINC02300-201ENST00000549742 665 ntTSL 4 BASIC2.63□□□□□ -1.99
NKX3-1Q99801 AC091534.1-202ENST00000549953 468 ntTSL 5 BASIC2.63□□□□□ -1.99
NKX3-1Q99801 ZNF519P2-201ENST00000557032 169 ntBASIC2.63□□□□□ -1.99
NKX3-1Q99801 AL391261.3-201ENST00000557194 520 ntBASIC2.63□□□□□ -1.99
NKX3-1Q99801 H3F3AP1-201ENST00000559984 334 ntBASIC2.63□□□□□ -1.99
NKX3-1Q99801 AC136619.2-201ENST00000563361 631 ntBASIC2.63□□□□□ -1.99
NKX3-1Q99801 AC011933.3-201ENST00000578226 372 ntTSL 1 (best) BASIC2.63□□□□□ -1.99
NKX3-1Q99801 AP003465.2-201ENST00000602571 373 ntBASIC2.63□□□□□ -1.99
NKX3-1Q99801 AL162274.2-201ENST00000614406 332 ntBASIC2.63□□□□□ -1.99
NKX3-1Q99801 U4.5-201ENST00000617137 123 ntBASIC2.63□□□□□ -1.99
NKX3-1Q99801 CDKN2B-AS.1-201ENST00000617921 150 ntBASIC2.63□□□□□ -1.99
NKX3-1Q99801 AC099506.2-201ENST00000623074 221 ntBASIC2.63□□□□□ -1.99
NKX3-1Q99801 OR4C16-201ENST00000623907 933 ntAPPRIS P1 BASIC2.63□□□□□ -1.99
NKX3-1Q99801 U2.21-201ENST00000637295 81 ntBASIC2.63□□□□□ -1.99
NKX3-1Q99801 MIR1321-201ENST00000637766 79 ntBASIC2.63□□□□□ -1.99
NKX3-1Q99801 ARHGAP5-202ENST00000345122 9604 ntAPPRIS P3 TSL 5 BASIC2.63□□□□□ -1.99
NKX3-1Q99801 MTND5P19-201ENST00000424872 1794 ntBASIC2.63□□□□□ -1.99
NKX3-1Q99801 TBC1D15-210ENST00000485960 2489 ntAPPRIS P1 TSL 1 (best) BASIC2.63□□□□□ -1.99
NKX3-1Q99801 MAPK10-266ENST00000641066 6555 ntBASIC2.62□□□□□ -1.99
NKX3-1Q99801 IL33-201ENST00000381434 2641 ntAPPRIS P1 TSL 1 (best) BASIC2.62□□□□□ -1.99
NKX3-1Q99801 HSFY2-201ENST00000304790 1444 ntAPPRIS P5 TSL 1 (best) BASIC2.62□□□□□ -1.99
NKX3-1Q99801 HSFY1-201ENST00000307393 1444 ntAPPRIS P5 TSL 1 (best) BASIC2.62□□□□□ -1.99
NKX3-1Q99801 AL049781.1-201ENST00000623195 3585 ntBASIC2.62□□□□□ -1.99
NKX3-1Q99801 TOPORSLP1-203ENST00000493279 2871 ntTSL 4 BASIC2.62□□□□□ -1.99
NKX3-1Q99801 KERA-201ENST00000266719 2162 ntAPPRIS P1 TSL 1 (best) BASIC2.62□□□□□ -1.99
NKX3-1Q99801 C6orf10-202ENST00000375015 2173 ntAPPRIS ALT2 TSL 5 BASIC2.62□□□□□ -1.99
NKX3-1Q99801 RNU6-778P-201ENST00000363269 103 ntBASIC2.62□□□□□ -1.99
NKX3-1Q99801 SNORA51.4-201ENST00000364993 124 ntBASIC2.62□□□□□ -1.99
NKX3-1Q99801 IARS-201ENST00000375627 697 ntTSL 3 BASIC2.62□□□□□ -1.99
NKX3-1Q99801 AKR1C1-201ENST00000380859 858 ntTSL 3 BASIC2.62□□□□□ -1.99
NKX3-1Q99801 Y_RNA.481-201ENST00000384373 102 ntBASIC2.62□□□□□ -1.99
NKX3-1Q99801 MIR128-1-201ENST00000384921 82 ntBASIC2.62□□□□□ -1.99
NKX3-1Q99801 RNU6-908P-201ENST00000410160 94 ntBASIC2.62□□□□□ -1.99
NKX3-1Q99801 RNU6-1025P-201ENST00000410629 104 ntBASIC2.62□□□□□ -1.99
NKX3-1Q99801 RNU6-1068P-201ENST00000410958 103 ntBASIC2.62□□□□□ -1.99
NKX3-1Q99801 RNA5SP344-201ENST00000411081 104 ntBASIC2.62□□□□□ -1.99
NKX3-1Q99801 RNU6-387P-201ENST00000411331 105 ntBASIC2.62□□□□□ -1.99
NKX3-1Q99801 USP9YP18-201ENST00000425912 695 ntBASIC2.62□□□□□ -1.99
NKX3-1Q99801 AC007271.1-201ENST00000428188 382 ntTSL 3 BASIC2.62□□□□□ -1.99
NKX3-1Q99801 GYPB-201ENST00000429670 239 ntTSL 1 (best) BASIC2.62□□□□□ -1.99
NKX3-1Q99801 AF124730.1-201ENST00000430001 327 ntTSL 2 BASIC2.62□□□□□ -1.99
NKX3-1Q99801 AC005160.1-201ENST00000432405 381 ntTSL 3 BASIC2.62□□□□□ -1.99
NKX3-1Q99801 AL603839.2-201ENST00000437060 546 ntTSL 5 BASIC2.62□□□□□ -1.99
NKX3-1Q99801 AP000431.2-201ENST00000450653 790 ntTSL 2 BASIC2.62□□□□□ -1.99
NKX3-1Q99801 AC092567.1-201ENST00000452397 251 ntTSL 3 BASIC2.62□□□□□ -1.99
NKX3-1Q99801 AC117465.1-201ENST00000457125 522 ntTSL 3 BASIC2.62□□□□□ -1.99
NKX3-1Q99801 RN7SL863P-201ENST00000462370 296 ntBASIC2.62□□□□□ -1.99
NKX3-1Q99801 RPS15AP34-201ENST00000487776 387 ntBASIC2.62□□□□□ -1.99
NKX3-1Q99801 PTPRG-AS1-210ENST00000498655 547 ntTSL 4 BASIC2.62□□□□□ -1.99
NKX3-1Q99801 AC008948.1-201ENST00000506058 325 ntTSL 2 BASIC2.62□□□□□ -1.99
NKX3-1Q99801 RNU6-1315P-201ENST00000517187 99 ntBASIC2.62□□□□□ -1.99
NKX3-1Q99801 AC103726.1-201ENST00000520785 474 ntTSL 2 BASIC2.62□□□□□ -1.99
NKX3-1Q99801 AC068205.1-204ENST00000532989 481 ntTSL 3 BASIC2.62□□□□□ -1.99
NKX3-1Q99801 LINC01495-202ENST00000534135 343 ntTSL 2 BASIC2.62□□□□□ -1.99
NKX3-1Q99801 MAPK1-204ENST00000544786 951 ntTSL 1 (best) BASIC2.62□□□□□ -1.99
NKX3-1Q99801 HIF1AP1-201ENST00000553642 175 ntBASIC2.62□□□□□ -1.99
NKX3-1Q99801 DNAJC8P1-201ENST00000554535 372 ntBASIC2.62□□□□□ -1.99
NKX3-1Q99801 MIR1273C-201ENST00000578669 77 ntBASIC2.62□□□□□ -1.99
NKX3-1Q99801 AC015813.2-201ENST00000578794 711 ntAPPRIS P1 TSL 3 BASIC2.62□□□□□ -1.99
NKX3-1Q99801 HMGN2P15-201ENST00000585707 270 ntBASIC2.62□□□□□ -1.99
NKX3-1Q99801 AC008739.1-201ENST00000598137 575 ntTSL 2 BASIC2.62□□□□□ -1.99
NKX3-1Q99801 AC007938.3-201ENST00000604965 623 ntBASIC2.62□□□□□ -1.99
NKX3-1Q99801 AC008945.2-201ENST00000606056 604 ntBASIC2.62□□□□□ -1.99
NKX3-1Q99801 DUSP12P1-201ENST00000612874 516 ntBASIC2.62□□□□□ -1.99
NKX3-1Q99801 AC073308.1-201ENST00000623696 305 ntBASIC2.62□□□□□ -1.99
NKX3-1Q99801 GYPB-216ENST00000638448 363 ntAPPRIS P1 TSL 1 (best) BASIC2.62□□□□□ -1.99
NKX3-1Q99801 AL353743.1-202ENST00000431724 1695 ntBASIC2.62□□□□□ -1.99
NKX3-1Q99801 ZNF479-202ENST00000331162 2072 ntAPPRIS P1 TSL 1 (best) BASIC2.62□□□□□ -1.99
NKX3-1Q99801 MUM1L1-203ENST00000372552 3957 ntAPPRIS P1 TSL 5 BASIC2.62□□□□□ -1.99
NKX3-1Q99801 LINC01419-201ENST00000522365 1521 ntTSL 1 (best) BASIC2.62□□□□□ -1.99
NKX3-1Q99801 LIPI-203ENST00000536861 1529 ntAPPRIS ALT2 TSL 1 (best) BASIC2.62□□□□□ -1.99
NKX3-1Q99801 FAM35BP-202ENST00000497389 3337 ntBASIC2.62□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 182.1 ms