Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 Y_RNA.661-201ENST00000516003 99 ntBASIC3.54□□□□□ -1.84
CLRN3Q8NCR9 RNU6-699P-201ENST00000517081 110 ntBASIC3.54□□□□□ -1.84
CLRN3Q8NCR9 SNORD116.3-201ENST00000517176 78 ntBASIC3.54□□□□□ -1.84
CLRN3Q8NCR9 SNORA31.23-201ENST00000517219 133 ntBASIC3.54□□□□□ -1.84
CLRN3Q8NCR9 RN7SKP295-201ENST00000517264 153 ntBASIC3.54□□□□□ -1.84
CLRN3Q8NCR9 AP002884.4-201ENST00000527589 594 ntTSL 3 BASIC3.54□□□□□ -1.84
CLRN3Q8NCR9 RGS5-206ENST00000527988 373 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
CLRN3Q8NCR9 POC1B-211ENST00000549504 581 ntTSL 5 BASIC3.54□□□□□ -1.84
CLRN3Q8NCR9 LINC02459-201ENST00000551761 474 ntTSL 3 BASIC3.54□□□□□ -1.84
CLRN3Q8NCR9 AC012100.2-201ENST00000558317 304 ntTSL 5 BASIC3.54□□□□□ -1.84
CLRN3Q8NCR9 MIR5696-201ENST00000578474 85 ntBASIC3.54□□□□□ -1.84
CLRN3Q8NCR9 AC087749.1-202ENST00000585020 566 ntTSL 2 BASIC3.54□□□□□ -1.84
CLRN3Q8NCR9 AC091152.3-201ENST00000604227 325 ntBASIC3.54□□□□□ -1.84
CLRN3Q8NCR9 AL121932.1-201ENST00000605542 214 ntBASIC3.54□□□□□ -1.84
CLRN3Q8NCR9 AC009318.2-201ENST00000610917 651 ntBASIC3.54□□□□□ -1.84
CLRN3Q8NCR9 XIST_intron.1-201ENST00000619444 68 ntBASIC3.54□□□□□ -1.84
CLRN3Q8NCR9 EDIL3-202ENST00000380138 4244 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
CLRN3Q8NCR9 RAD17P1-201ENST00000418130 2042 ntBASIC3.54□□□□□ -1.84
CLRN3Q8NCR9 SPATA31D2P-201ENST00000429999 4388 ntBASIC3.54□□□□□ -1.84
CLRN3Q8NCR9 TRIQK-206ENST00000518748 3563 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
CLRN3Q8NCR9 AL033384.1-202ENST00000431554 3104 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
CLRN3Q8NCR9 CCNYL2-202ENST00000637719 3311 ntTSL 2 BASIC3.54□□□□□ -1.84
CLRN3Q8NCR9 MRPL42-206ENST00000549982 15582 ntAPPRIS P2 TSL 1 (best) BASIC3.53□□□□□ -1.84
CLRN3Q8NCR9 TUG1-202ENST00000521091 2110 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
CLRN3Q8NCR9 RXFP1-205ENST00000448688 3861 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
CLRN3Q8NCR9 RNY1P16-201ENST00000363063 111 ntBASIC3.53□□□□□ -1.84
CLRN3Q8NCR9 Y_RNA.123-201ENST00000363338 102 ntBASIC3.53□□□□□ -1.84
CLRN3Q8NCR9 Y_RNA.132-201ENST00000363421 102 ntBASIC3.53□□□□□ -1.84
CLRN3Q8NCR9 SNORA33.2-201ENST00000365413 134 ntBASIC3.53□□□□□ -1.84
CLRN3Q8NCR9 C1orf54-201ENST00000369098 418 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
CLRN3Q8NCR9 U1.1-201ENST00000384101 164 ntBASIC3.53□□□□□ -1.84
CLRN3Q8NCR9 SNORA67-201ENST00000384423 137 ntBASIC3.53□□□□□ -1.84
CLRN3Q8NCR9 MIR767-201ENST00000390228 109 ntBASIC3.53□□□□□ -1.84
CLRN3Q8NCR9 RNA5SP390-201ENST00000410191 113 ntBASIC3.53□□□□□ -1.84
CLRN3Q8NCR9 EIF1AXP1-201ENST00000419267 435 ntBASIC3.53□□□□□ -1.84
CLRN3Q8NCR9 NUP35P1-201ENST00000422734 947 ntBASIC3.53□□□□□ -1.84
CLRN3Q8NCR9 AC069257.1-202ENST00000425275 422 ntTSL 3 BASIC3.53□□□□□ -1.84
CLRN3Q8NCR9 AL365496.1-201ENST00000426885 215 ntBASIC3.53□□□□□ -1.84
CLRN3Q8NCR9 LINC01870-201ENST00000427042 390 ntTSL 3 BASIC3.53□□□□□ -1.84
CLRN3Q8NCR9 CEP57L1P1-201ENST00000430943 1201 ntBASIC3.53□□□□□ -1.84
CLRN3Q8NCR9 AC011742.1-201ENST00000431448 434 ntBASIC3.53□□□□□ -1.84
CLRN3Q8NCR9 AL353997.1-201ENST00000432936 108 ntBASIC3.53□□□□□ -1.84
CLRN3Q8NCR9 ATP5HP2-201ENST00000433885 485 ntBASIC3.53□□□□□ -1.84
CLRN3Q8NCR9 KCND3-IT1-201ENST00000439736 376 ntTSL 3 BASIC3.53□□□□□ -1.84
CLRN3Q8NCR9 AL442638.1-201ENST00000443359 237 ntTSL 5 BASIC3.53□□□□□ -1.84
CLRN3Q8NCR9 AL353148.1-201ENST00000449761 463 ntTSL 2 BASIC3.53□□□□□ -1.84
CLRN3Q8NCR9 SPAG11B-206ENST00000458665 444 ntTSL 5 BASIC3.53□□□□□ -1.84
CLRN3Q8NCR9 RN7SL174P-201ENST00000475578 289 ntBASIC3.53□□□□□ -1.84
CLRN3Q8NCR9 AL049830.2-201ENST00000480072 201 ntBASIC3.53□□□□□ -1.84
CLRN3Q8NCR9 AL033397.2-201ENST00000508884 547 ntTSL 2 BASIC3.53□□□□□ -1.84
CLRN3Q8NCR9 AP000889.1-201ENST00000530968 660 ntBASIC3.53□□□□□ -1.84
CLRN3Q8NCR9 AC084816.1-207ENST00000538317 584 ntTSL 4 BASIC3.53□□□□□ -1.84
CLRN3Q8NCR9 AC063950.1-201ENST00000552036 308 ntBASIC3.53□□□□□ -1.84
CLRN3Q8NCR9 AC007225.2-201ENST00000562529 256 ntBASIC3.53□□□□□ -1.84
CLRN3Q8NCR9 LUZP6-201ENST00000589735 177 ntAPPRIS P1 BASIC3.53□□□□□ -1.84
CLRN3Q8NCR9 ZRANB2-AS2-213ENST00000591654 719 ntTSL 5 BASIC3.53□□□□□ -1.84
CLRN3Q8NCR9 7SK.7-201ENST00000603504 247 ntBASIC3.53□□□□□ -1.84
CLRN3Q8NCR9 AC016925.2-201ENST00000605108 242 ntBASIC3.53□□□□□ -1.84
CLRN3Q8NCR9 RNU6-91P-201ENST00000607774 107 ntBASIC3.53□□□□□ -1.84
CLRN3Q8NCR9 MIR663AHG-231ENST00000609044 590 ntTSL 5 BASIC3.53□□□□□ -1.84
CLRN3Q8NCR9 MIR6768-201ENST00000610734 72 ntBASIC3.53□□□□□ -1.84
CLRN3Q8NCR9 AC083806.3-201ENST00000614016 455 ntBASIC3.53□□□□□ -1.84
CLRN3Q8NCR9 U6.98-201ENST00000637157 84 ntBASIC3.53□□□□□ -1.84
CLRN3Q8NCR9 AL732372.2-225ENST00000642124 456 ntBASIC3.53□□□□□ -1.84
CLRN3Q8NCR9 KNTC1-204ENST00000436959 2412 ntTSL 2 BASIC3.53□□□□□ -1.84
CLRN3Q8NCR9 C11orf65-208ENST00000615746 2711 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
CLRN3Q8NCR9 AC025164.2-202ENST00000499685 5699 ntTSL 3 BASIC3.53□□□□□ -1.84
CLRN3Q8NCR9 AC009541.1-201ENST00000438279 2662 ntBASIC3.53□□□□□ -1.84
CLRN3Q8NCR9 MFSD8-216ENST00000641147 4009 ntBASIC3.53□□□□□ -1.85
CLRN3Q8NCR9 FGF7-202ENST00000560270 1688 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
CLRN3Q8NCR9 GABRG2-229ENST00000641017 3628 ntBASIC3.52□□□□□ -1.85
CLRN3Q8NCR9 PCDH11X-208ENST00000504220 4017 ntAPPRIS ALT2 TSL 1 (best) BASIC3.52□□□□□ -1.85
CLRN3Q8NCR9 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC3.52□□□□□ -1.85
CLRN3Q8NCR9 ZNF439-201ENST00000304030 2622 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
CLRN3Q8NCR9 SLC16A10-201ENST00000368850 10051 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
CLRN3Q8NCR9 FKTN-209ENST00000602661 2576 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
CLRN3Q8NCR9 Y_RNA.31-201ENST00000362574 102 ntBASIC3.52□□□□□ -1.85
CLRN3Q8NCR9 RNA5SP335-201ENST00000363817 110 ntBASIC3.52□□□□□ -1.85
CLRN3Q8NCR9 RNU1-115P-201ENST00000365329 160 ntBASIC3.52□□□□□ -1.85
CLRN3Q8NCR9 SNORA22B-201ENST00000383876 138 ntBASIC3.52□□□□□ -1.85
CLRN3Q8NCR9 Y_RNA.533-201ENST00000384596 114 ntBASIC3.52□□□□□ -1.85
CLRN3Q8NCR9 Y_RNA.577-201ENST00000384794 101 ntBASIC3.52□□□□□ -1.85
CLRN3Q8NCR9 HNRNPDLP1-201ENST00000412834 550 ntBASIC3.52□□□□□ -1.85
CLRN3Q8NCR9 AC011754.1-201ENST00000415201 491 ntTSL 5 BASIC3.52□□□□□ -1.85
CLRN3Q8NCR9 AC079790.1-201ENST00000420365 507 ntTSL 3 BASIC3.52□□□□□ -1.85
CLRN3Q8NCR9 AC083863.1-201ENST00000438811 231 ntBASIC3.52□□□□□ -1.85
CLRN3Q8NCR9 ABCF2P2-201ENST00000450549 296 ntBASIC3.52□□□□□ -1.85
CLRN3Q8NCR9 RN7SL329P-201ENST00000467740 299 ntBASIC3.52□□□□□ -1.85
CLRN3Q8NCR9 RPS26P21-201ENST00000475397 348 ntBASIC3.52□□□□□ -1.85
CLRN3Q8NCR9 RN7SL97P-201ENST00000486780 299 ntBASIC3.52□□□□□ -1.85
CLRN3Q8NCR9 RN7SL547P-201ENST00000490793 290 ntBASIC3.52□□□□□ -1.85
CLRN3Q8NCR9 AC009120.5-201ENST00000561669 475 ntTSL 5 BASIC3.52□□□□□ -1.85
CLRN3Q8NCR9 SNORD95-201ENST00000579879 68 ntBASIC3.52□□□□□ -1.85
CLRN3Q8NCR9 AC011444.3-201ENST00000588342 325 ntTSL 3 BASIC3.52□□□□□ -1.85
CLRN3Q8NCR9 AC005034.5-201ENST00000604219 466 ntBASIC3.52□□□□□ -1.85
CLRN3Q8NCR9 AC005014.2-201ENST00000607795 599 ntBASIC3.52□□□□□ -1.85
CLRN3Q8NCR9 ABCC9-206ENST00000621589 450 ntTSL 5 BASIC3.52□□□□□ -1.85
CLRN3Q8NCR9 AC093495.1-217ENST00000627385 428 ntTSL 5 BASIC3.52□□□□□ -1.85
CLRN3Q8NCR9 WDR75-207ENST00000631047 270 ntTSL 5 BASIC3.52□□□□□ -1.85
CLRN3Q8NCR9 DNAJC10-201ENST00000264065 20129 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 144.1 ms