Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 ZBBX-201ENST00000307529 3071 ntAPPRIS ALT2 TSL 5 BASIC2.28□□□□□ -2.04
COL4A4P53420 ZBBX-204ENST00000392767 3071 ntAPPRIS ALT2 TSL 5 BASIC2.28□□□□□ -2.04
COL4A4P53420 CXADR-205ENST00000400169 1445 ntAPPRIS ALT2 TSL 5 BASIC2.28□□□□□ -2.04
COL4A4P53420 SNX16-212ENST00000615066 1918 ntTSL 5 BASIC2.28□□□□□ -2.04
COL4A4P53420 AC107982.1-201ENST00000507171 1300 ntBASIC2.28□□□□□ -2.04
COL4A4P53420 DENND4A-202ENST00000443035 8665 ntTSL 1 (best) BASIC2.28□□□□□ -2.04
COL4A4P53420 RGS22-214ENST00000523287 4033 ntAPPRIS ALT2 TSL 2 BASIC2.28□□□□□ -2.05
COL4A4P53420 RNU5F-6P-201ENST00000362979 116 ntBASIC2.28□□□□□ -2.05
COL4A4P53420 U8.3-201ENST00000363321 132 ntBASIC2.28□□□□□ -2.05
COL4A4P53420 RNU6-1085P-201ENST00000363576 107 ntBASIC2.28□□□□□ -2.05
COL4A4P53420 Y_RNA.159-201ENST00000363674 87 ntBASIC2.28□□□□□ -2.05
COL4A4P53420 Y_RNA.160-201ENST00000363677 92 ntBASIC2.28□□□□□ -2.05
COL4A4P53420 RNU6-1322P-201ENST00000364309 107 ntBASIC2.28□□□□□ -2.05
COL4A4P53420 CUBN-201ENST00000377823 705 ntTSL 3 BASIC2.28□□□□□ -2.05
COL4A4P53420 Y_RNA.409-201ENST00000383990 98 ntBASIC2.28□□□□□ -2.05
COL4A4P53420 MIR559-201ENST00000385188 96 ntBASIC2.28□□□□□ -2.05
COL4A4P53420 RNU6-244P-201ENST00000391028 104 ntBASIC2.28□□□□□ -2.05
COL4A4P53420 BTBD10P2-201ENST00000404779 676 ntBASIC2.28□□□□□ -2.05
COL4A4P53420 CTNNA2-204ENST00000409266 432 ntTSL 3 BASIC2.28□□□□□ -2.05
COL4A4P53420 MTCO2P5-201ENST00000422621 426 ntBASIC2.28□□□□□ -2.05
COL4A4P53420 LINC01707-201ENST00000425517 627 ntTSL 3 BASIC2.28□□□□□ -2.05
COL4A4P53420 AL365400.1-201ENST00000431854 640 ntBASIC2.28□□□□□ -2.05
COL4A4P53420 AC109583.1-201ENST00000432156 268 ntBASIC2.28□□□□□ -2.05
COL4A4P53420 IFNA20P-201ENST00000436840 528 ntBASIC2.28□□□□□ -2.05
COL4A4P53420 AC018816.1-203ENST00000441894 338 ntTSL 3 BASIC2.28□□□□□ -2.05
COL4A4P53420 AP1S3-208ENST00000446015 499 ntAPPRIS ALT1 TSL 1 (best) BASIC2.28□□□□□ -2.05
COL4A4P53420 AC004936.1-201ENST00000451755 361 ntTSL 3 BASIC2.28□□□□□ -2.05
COL4A4P53420 RPL7P42-201ENST00000481005 679 ntBASIC2.28□□□□□ -2.05
COL4A4P53420 SNX5P1-201ENST00000505757 1041 ntBASIC2.28□□□□□ -2.05
COL4A4P53420 LYRM7-202ENST00000507584 317 ntTSL 2 BASIC2.28□□□□□ -2.05
COL4A4P53420 LINC02229-201ENST00000508486 661 ntTSL 3 BASIC2.28□□□□□ -2.05
COL4A4P53420 AC108078.2-201ENST00000510750 236 ntBASIC2.28□□□□□ -2.05
COL4A4P53420 AC092436.3-201ENST00000511788 257 ntBASIC2.28□□□□□ -2.05
COL4A4P53420 RNU6-445P-201ENST00000516949 107 ntBASIC2.28□□□□□ -2.05
COL4A4P53420 RNU6-1261P-201ENST00000517194 104 ntBASIC2.28□□□□□ -2.05
COL4A4P53420 AC011257.1-201ENST00000519048 281 ntTSL 3 BASIC2.28□□□□□ -2.05
COL4A4P53420 ZNF84-205ENST00000535439 647 ntTSL 5 BASIC2.28□□□□□ -2.05
COL4A4P53420 AC025575.1-201ENST00000548497 544 ntTSL 4 BASIC2.28□□□□□ -2.05
COL4A4P53420 RPL21P5-201ENST00000554662 472 ntBASIC2.28□□□□□ -2.05
COL4A4P53420 LINC02301-203ENST00000555798 789 ntTSL 3 BASIC2.28□□□□□ -2.05
COL4A4P53420 AL121821.2-201ENST00000556081 394 ntBASIC2.28□□□□□ -2.05
COL4A4P53420 AC138915.2-201ENST00000569776 97 ntBASIC2.28□□□□□ -2.05
COL4A4P53420 LINC01899-201ENST00000580323 312 ntTSL 5 BASIC2.28□□□□□ -2.05
COL4A4P53420 AL391813.2-201ENST00000609113 322 ntBASIC2.28□□□□□ -2.05
COL4A4P53420 AC093838.1-201ENST00000613014 469 ntBASIC2.28□□□□□ -2.05
COL4A4P53420 RPL36A-210ENST00000614077 881 ntTSL 1 (best) BASIC2.28□□□□□ -2.05
COL4A4P53420 5S_rRNA.12-201ENST00000617631 107 ntBASIC2.28□□□□□ -2.05
COL4A4P53420 AC005858.1-201ENST00000620193 677 ntTSL 2 BASIC2.28□□□□□ -2.05
COL4A4P53420 AC110491.2-201ENST00000624061 646 ntTSL 5 BASIC2.28□□□□□ -2.05
COL4A4P53420 SCOC-202ENST00000394201 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC2.27□□□□□ -2.05
COL4A4P53420 MGAT4C-210ENST00000620241 3194 ntAPPRIS P1 TSL 2 BASIC2.27□□□□□ -2.05
COL4A4P53420 SLC25A46-206ENST00000509432 1596 ntTSL 2 BASIC2.27□□□□□ -2.05
COL4A4P53420 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC2.27□□□□□ -2.05
COL4A4P53420 AL161431.1-201ENST00000618966 4205 ntBASIC2.27□□□□□ -2.05
COL4A4P53420 ZNF85-203ENST00000345030 1689 ntAPPRIS ALT2 TSL 5 BASIC2.27□□□□□ -2.05
COL4A4P53420 P2RY12-201ENST00000302632 1766 ntAPPRIS P1 TSL 1 (best) BASIC2.27□□□□□ -2.05
COL4A4P53420 Y_RNA.1-201ENST00000352915 104 ntBASIC2.27□□□□□ -2.05
COL4A4P53420 SUGT1P1-201ENST00000379514 476 ntBASIC2.27□□□□□ -2.05
COL4A4P53420 Y_RNA.419-201ENST00000384041 102 ntBASIC2.27□□□□□ -2.05
COL4A4P53420 TRGV11-201ENST00000390340 463 ntAPPRIS P1 BASIC2.27□□□□□ -2.05
COL4A4P53420 SNORD115.1-201ENST00000391109 76 ntBASIC2.27□□□□□ -2.05
COL4A4P53420 RNU4-55P-201ENST00000410731 137 ntBASIC2.27□□□□□ -2.05
COL4A4P53420 AC091705.1-201ENST00000412197 209 ntTSL 5 BASIC2.27□□□□□ -2.05
COL4A4P53420 AL078590.1-201ENST00000412602 479 ntTSL 3 BASIC2.27□□□□□ -2.05
COL4A4P53420 AP000432.1-201ENST00000416641 516 ntTSL 3 BASIC2.27□□□□□ -2.05
COL4A4P53420 AC083875.1-201ENST00000419509 405 ntBASIC2.27□□□□□ -2.05
COL4A4P53420 AC026355.1-201ENST00000423466 587 ntTSL 5 BASIC2.27□□□□□ -2.05
COL4A4P53420 AL589872.1-201ENST00000426602 288 ntBASIC2.27□□□□□ -2.05
COL4A4P53420 AL596220.1-202ENST00000429768 314 ntTSL 3 BASIC2.27□□□□□ -2.05
COL4A4P53420 MTCYBP45-201ENST00000435243 565 ntBASIC2.27□□□□□ -2.05
COL4A4P53420 AC093716.1-201ENST00000435923 377 ntBASIC2.27□□□□□ -2.05
COL4A4P53420 LINC01307-201ENST00000439146 474 ntTSL 3 BASIC2.27□□□□□ -2.05
COL4A4P53420 AL591721.1-201ENST00000439849 751 ntTSL 3 BASIC2.27□□□□□ -2.05
COL4A4P53420 AC003989.2-201ENST00000440224 169 ntBASIC2.27□□□□□ -2.05
COL4A4P53420 MTCYBP6-201ENST00000441810 138 ntBASIC2.27□□□□□ -2.05
COL4A4P53420 LINC00529-201ENST00000443854 241 ntTSL 2 BASIC2.27□□□□□ -2.05
COL4A4P53420 AL157882.1-201ENST00000447148 429 ntTSL 3 BASIC2.27□□□□□ -2.05
COL4A4P53420 AL590365.1-201ENST00000450788 243 ntBASIC2.27□□□□□ -2.05
COL4A4P53420 AC092567.1-201ENST00000452397 251 ntTSL 3 BASIC2.27□□□□□ -2.05
COL4A4P53420 PLCH1-AS2-201ENST00000472913 408 ntTSL 2 BASIC2.27□□□□□ -2.05
COL4A4P53420 AC069528.1-201ENST00000490344 705 ntTSL 3 BASIC2.27□□□□□ -2.05
COL4A4P53420 AC005840.1-201ENST00000498412 377 ntBASIC2.27□□□□□ -2.05
COL4A4P53420 RPL38P4-201ENST00000502376 214 ntBASIC2.27□□□□□ -2.05
COL4A4P53420 HMGB1P29-201ENST00000505659 499 ntBASIC2.27□□□□□ -2.05
COL4A4P53420 AC018710.1-201ENST00000506509 158 ntBASIC2.27□□□□□ -2.05
COL4A4P53420 AC108156.1-201ENST00000507849 481 ntTSL 3 BASIC2.27□□□□□ -2.05
COL4A4P53420 AC010493.1-201ENST00000513479 292 ntBASIC2.27□□□□□ -2.05
COL4A4P53420 AC104232.2-201ENST00000519680 769 ntTSL 5 BASIC2.27□□□□□ -2.05
COL4A4P53420 IGJP1-201ENST00000522682 475 ntBASIC2.27□□□□□ -2.05
COL4A4P53420 AP003034.1-201ENST00000534621 422 ntBASIC2.27□□□□□ -2.05
COL4A4P53420 AC117505.1-202ENST00000547027 566 ntTSL 3 BASIC2.27□□□□□ -2.05
COL4A4P53420 AC008127.2-201ENST00000549925 1075 ntBASIC2.27□□□□□ -2.05
COL4A4P53420 AC009754.1-201ENST00000566282 540 ntTSL 4 BASIC2.27□□□□□ -2.05
COL4A4P53420 TCF4-AS2-201ENST00000586467 445 ntTSL 2 BASIC2.27□□□□□ -2.05
COL4A4P53420 AP001029.2-202ENST00000588197 739 ntTSL 3 BASIC2.27□□□□□ -2.05
COL4A4P53420 AC011712.1-201ENST00000588959 234 ntBASIC2.27□□□□□ -2.05
COL4A4P53420 AC002115.1-201ENST00000589603 568 ntTSL 4 BASIC2.27□□□□□ -2.05
COL4A4P53420 AC243960.4-201ENST00000600532 288 ntBASIC2.27□□□□□ -2.05
COL4A4P53420 AL360085.1-201ENST00000604713 532 ntBASIC2.27□□□□□ -2.05
COL4A4P53420 AL050343.2-201ENST00000607338 280 ntBASIC2.27□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 148.5 ms