Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 AC068057.2-201ENST00000624047 895 ntBASIC0.84□□□□□ -2.28
CUX1P39880 AP003400.5-201ENST00000624827 617 ntBASIC0.84□□□□□ -2.28
CUX1P39880 AL109837.2-201ENST00000632608 295 ntTSL 3 BASIC0.84□□□□□ -2.28
CUX1P39880 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC0.83□□□□□ -2.28
CUX1P39880 MIR92A1-201ENST00000385233 78 ntBASIC0.83□□□□□ -2.28
CUX1P39880 AL356421.1-201ENST00000403255 413 ntBASIC0.83□□□□□ -2.28
CUX1P39880 LINC02331-201ENST00000418927 602 ntTSL 5 BASIC0.83□□□□□ -2.28
CUX1P39880 Z99497.1-201ENST00000421282 135 ntBASIC0.83□□□□□ -2.28
CUX1P39880 TCEAL3-AS1-201ENST00000424887 361 ntTSL 5 BASIC0.83□□□□□ -2.28
CUX1P39880 AC245047.4-201ENST00000433189 144 ntBASIC0.83□□□□□ -2.28
CUX1P39880 AL589935.1-218ENST00000434683 529 ntTSL 3 BASIC0.83□□□□□ -2.28
CUX1P39880 YWHAZP8-201ENST00000436935 731 ntBASIC0.83□□□□□ -2.28
CUX1P39880 AL353699.1-201ENST00000529078 365 ntTSL 3 BASIC0.83□□□□□ -2.28
CUX1P39880 AC217774.1-201ENST00000578936 517 ntTSL 4 BASIC0.83□□□□□ -2.28
CUX1P39880 MIR4514-201ENST00000581410 57 ntBASIC0.83□□□□□ -2.28
CUX1P39880 MIR4636-201ENST00000582271 80 ntBASIC0.83□□□□□ -2.28
CUX1P39880 MIR4713-201ENST00000582691 75 ntBASIC0.83□□□□□ -2.28
CUX1P39880 BNIP3P25-201ENST00000596023 559 ntBASIC0.83□□□□□ -2.28
CUX1P39880 HSPE1P19-201ENST00000603327 295 ntBASIC0.83□□□□□ -2.28
CUX1P39880 AC073308.1-201ENST00000623696 305 ntBASIC0.83□□□□□ -2.28
CUX1P39880 AP000776.1-201ENST00000530032 1663 ntBASIC0.83□□□□□ -2.28
CUX1P39880 MIR218-1-201ENST00000384999 110 ntBASIC0.82□□□□□ -2.28
CUX1P39880 RNU6ATAC2P-201ENST00000387943 126 ntBASIC0.82□□□□□ -2.28
CUX1P39880 MIR1265-201ENST00000408444 86 ntBASIC0.82□□□□□ -2.28
CUX1P39880 AL365184.1-201ENST00000413801 572 ntTSL 3 BASIC0.82□□□□□ -2.28
CUX1P39880 AC092047.1-201ENST00000424997 240 ntBASIC0.82□□□□□ -2.28
CUX1P39880 AL390879.2-204ENST00000438602 582 ntTSL 3 BASIC0.82□□□□□ -2.28
CUX1P39880 AC004485.1-201ENST00000439839 527 ntTSL 5 BASIC0.82□□□□□ -2.28
CUX1P39880 AL589880.1-201ENST00000448271 287 ntBASIC0.82□□□□□ -2.28
CUX1P39880 AL591504.1-201ENST00000450681 414 ntTSL 3 BASIC0.82□□□□□ -2.28
CUX1P39880 AL139147.1-201ENST00000502413 1156 ntTSL 2 BASIC0.82□□□□□ -2.28
CUX1P39880 AC108935.1-201ENST00000504874 518 ntTSL 2 BASIC0.82□□□□□ -2.28
CUX1P39880 MIR892C-201ENST00000516410 77 ntBASIC0.82□□□□□ -2.28
CUX1P39880 SCARNA3-201ENST00000517097 143 ntBASIC0.82□□□□□ -2.28
CUX1P39880 LINC02384-208ENST00000546086 565 ntTSL 3 BASIC0.82□□□□□ -2.28
CUX1P39880 DISC1FP1-202ENST00000562245 774 ntTSL 3 BASIC0.82□□□□□ -2.28
CUX1P39880 MTND2P41-201ENST00000637599 773 ntBASIC0.82□□□□□ -2.28
CUX1P39880 MGST1-201ENST00000010404 901 ntAPPRIS P1 TSL 5 BASIC0.81□□□□□ -2.28
CUX1P39880 MDM2-205ENST00000348801 798 ntTSL 1 (best) BASIC0.81□□□□□ -2.28
CUX1P39880 FABP12-201ENST00000360464 551 ntAPPRIS P1 TSL 1 (best) BASIC0.81□□□□□ -2.28
CUX1P39880 RNU6-339P-201ENST00000384310 107 ntBASIC0.81□□□□□ -2.28
CUX1P39880 MGST1-203ENST00000396207 909 ntAPPRIS P1 TSL 1 (best) BASIC0.81□□□□□ -2.28
CUX1P39880 HMGN2P39-201ENST00000398005 273 ntBASIC0.81□□□□□ -2.28
CUX1P39880 RNA5SP25-201ENST00000410815 110 ntBASIC0.81□□□□□ -2.28
CUX1P39880 AC073614.1-201ENST00000438690 650 ntBASIC0.81□□□□□ -2.28
CUX1P39880 AC004994.1-201ENST00000447057 313 ntTSL 3 BASIC0.81□□□□□ -2.28
CUX1P39880 AC109927.2-201ENST00000506416 303 ntBASIC0.81□□□□□ -2.28
CUX1P39880 AC026780.1-201ENST00000512237 952 ntTSL 3 BASIC0.81□□□□□ -2.28
CUX1P39880 AC022447.1-201ENST00000515358 464 ntBASIC0.81□□□□□ -2.28
CUX1P39880 AC074051.3-201ENST00000570238 358 ntBASIC0.81□□□□□ -2.28
CUX1P39880 AL021997.1-201ENST00000605757 193 ntBASIC0.81□□□□□ -2.28
CUX1P39880 AL161616.2-201ENST00000622001 565 ntTSL 4 BASIC0.81□□□□□ -2.28
CUX1P39880 AP003072.5-201ENST00000623872 773 ntBASIC0.81□□□□□ -2.28
CUX1P39880 AC092192.1-201ENST00000633154 1018 ntBASIC0.81□□□□□ -2.28
CUX1P39880 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.81□□□□□ -2.28
CUX1P39880 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.81□□□□□ -2.28
CUX1P39880 AL391516.1-201ENST00000554380 2449 ntBASIC0.8□□□□□ -2.28
CUX1P39880 RNU6-452P-201ENST00000384406 107 ntBASIC0.8□□□□□ -2.28
CUX1P39880 MICF-203ENST00000432679 129 ntBASIC0.8□□□□□ -2.28
CUX1P39880 MTND6P13-201ENST00000443510 523 ntBASIC0.8□□□□□ -2.28
CUX1P39880 AC138853.1-201ENST00000503549 823 ntBASIC0.8□□□□□ -2.28
CUX1P39880 AC107463.1-202ENST00000514526 689 ntTSL 2 BASIC0.8□□□□□ -2.28
CUX1P39880 SMIM18-201ENST00000517349 905 ntAPPRIS P1 TSL 2 BASIC0.8□□□□□ -2.28
CUX1P39880 PTK2-220ENST00000520151 573 ntTSL 4 BASIC0.8□□□□□ -2.28
CUX1P39880 AP003497.1-201ENST00000528472 562 ntBASIC0.8□□□□□ -2.28
CUX1P39880 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC0.8□□□□□ -2.28
CUX1P39880 AC117505.1-202ENST00000547027 566 ntTSL 3 BASIC0.8□□□□□ -2.28
CUX1P39880 AC010620.1-201ENST00000601088 1102 ntBASIC0.8□□□□□ -2.28
CUX1P39880 AC005021.1-201ENST00000608730 355 ntBASIC0.8□□□□□ -2.28
CUX1P39880 RNU6-1035P-201ENST00000384477 107 ntBASIC0.79□□□□□ -2.28
CUX1P39880 SNORA8-201ENST00000384574 139 ntBASIC0.79□□□□□ -2.28
CUX1P39880 DSCR4-IT1-201ENST00000417138 424 ntTSL 5 BASIC0.79□□□□□ -2.28
CUX1P39880 LY96-202ENST00000518893 430 ntTSL 3 BASIC0.79□□□□□ -2.28
CUX1P39880 NAP1L1P1-201ENST00000524793 1063 ntBASIC0.79□□□□□ -2.28
CUX1P39880 CARD18-203ENST00000532895 422 ntTSL 2 BASIC0.79□□□□□ -2.28
CUX1P39880 RNASEH2B-AS1-202ENST00000593369 648 ntTSL 5 BASIC0.79□□□□□ -2.28
CUX1P39880 AL078605.1-201ENST00000603529 500 ntBASIC0.79□□□□□ -2.28
CUX1P39880 AC013468.1-201ENST00000608680 598 ntBASIC0.79□□□□□ -2.28
CUX1P39880 FRG1HP-204ENST00000617940 757 ntBASIC0.79□□□□□ -2.28
CUX1P39880 AC068787.1-201ENST00000623908 691 ntBASIC0.79□□□□□ -2.28
CUX1P39880 CD44-239ENST00000639002 528 ntTSL 1 (best) BASIC0.79□□□□□ -2.28
CUX1P39880 MT-CYB-201ENST00000361789 1141 ntAPPRIS P1 BASIC0.79□□□□□ -2.28
CUX1P39880 RNA5SP331-201ENST00000364986 107 ntBASIC0.79□□□□□ -2.28
CUX1P39880 DSTNP4-201ENST00000399472 474 ntBASIC0.79□□□□□ -2.28
CUX1P39880 LURAP1L-AS1-201ENST00000417638 799 ntTSL 3 BASIC0.79□□□□□ -2.28
CUX1P39880 AC107081.2-201ENST00000425779 802 ntTSL 5 BASIC0.79□□□□□ -2.28
CUX1P39880 TOMM22P2-201ENST00000430735 237 ntBASIC0.79□□□□□ -2.28
CUX1P39880 RPL36P19-201ENST00000430744 301 ntBASIC0.79□□□□□ -2.28
CUX1P39880 HMGN2P9-201ENST00000476875 229 ntBASIC0.79□□□□□ -2.28
CUX1P39880 AC111193.1-201ENST00000504097 155 ntBASIC0.79□□□□□ -2.28
CUX1P39880 AC107953.1-201ENST00000522216 297 ntBASIC0.79□□□□□ -2.28
CUX1P39880 AC006355.2-201ENST00000629240 317 ntTSL 3 BASIC0.79□□□□□ -2.28
CUX1P39880 MIR5087-201ENST00000635826 76 ntBASIC0.79□□□□□ -2.28
CUX1P39880 SNORA63.3-201ENST00000362682 132 ntBASIC0.78□□□□□ -2.28
CUX1P39880 TRDJ3-201ENST00000390476 59 ntAPPRIS P1 BASIC0.78□□□□□ -2.28
CUX1P39880 RNU6-272P-201ENST00000411028 104 ntBASIC0.78□□□□□ -2.28
CUX1P39880 RPL37P10-201ENST00000412884 288 ntBASIC0.78□□□□□ -2.28
CUX1P39880 AC079150.1-201ENST00000413043 383 ntTSL 3 BASIC0.78□□□□□ -2.28
CUX1P39880 LINC01347-201ENST00000417964 355 ntBASIC0.78□□□□□ -2.28
CUX1P39880 MAP3K13-207ENST00000438798 388 ntTSL 2 BASIC0.78□□□□□ -2.28
Retrieved 100 of 98,524 protein–RNA pairs in 86.6 ms