Protein–RNA interactions for Protein: P22670

RFX1, MHC class II regulatory factor RFX1, humanhuman

Predictions only

Length 979 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX1P22670 LARP4-202ENST00000347328 3621 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
RFX1P22670 Y_RNA.27-201ENST00000362540 103 ntBASIC5.04□□□□□ -1.6
RFX1P22670 RNA5SP388-201ENST00000362584 119 ntBASIC5.04□□□□□ -1.6
RFX1P22670 BANF2-202ENST00000377805 444 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
RFX1P22670 Y_RNA.405-201ENST00000383979 100 ntBASIC5.04□□□□□ -1.6
RFX1P22670 Y_RNA.451-201ENST00000384200 100 ntBASIC5.04□□□□□ -1.6
RFX1P22670 Y_RNA.483-201ENST00000384380 101 ntBASIC5.04□□□□□ -1.6
RFX1P22670 Y_RNA.524-201ENST00000384564 100 ntBASIC5.04□□□□□ -1.6
RFX1P22670 Y_RNA.561-201ENST00000384694 100 ntBASIC5.04□□□□□ -1.6
RFX1P22670 RNU1-82P-201ENST00000390851 165 ntBASIC5.04□□□□□ -1.6
RFX1P22670 EIF4EBP2P3-201ENST00000403144 334 ntBASIC5.04□□□□□ -1.6
RFX1P22670 AC092660.1-201ENST00000420648 371 ntTSL 2 BASIC5.04□□□□□ -1.6
RFX1P22670 MTCO3P29-201ENST00000432119 779 ntBASIC5.04□□□□□ -1.6
RFX1P22670 AL451050.1-201ENST00000450126 415 ntBASIC5.04□□□□□ -1.6
RFX1P22670 NUTF2P7-201ENST00000453086 375 ntBASIC5.04□□□□□ -1.6
RFX1P22670 AC108022.1-201ENST00000493466 478 ntBASIC5.04□□□□□ -1.6
RFX1P22670 LINC02501-201ENST00000510420 426 ntTSL 2 BASIC5.04□□□□□ -1.6
RFX1P22670 AC107222.1-201ENST00000510899 637 ntBASIC5.04□□□□□ -1.6
RFX1P22670 SNHG1-218ENST00000541615 748 ntTSL 5 BASIC5.04□□□□□ -1.6
RFX1P22670 CR383656.8-201ENST00000549046 145 ntBASIC5.04□□□□□ -1.6
RFX1P22670 LINC02327-203ENST00000550122 738 ntTSL 2 BASIC5.04□□□□□ -1.6
RFX1P22670 AC107016.1-201ENST00000550463 337 ntBASIC5.04□□□□□ -1.6
RFX1P22670 AC104002.2-201ENST00000553919 318 ntTSL 5 BASIC5.04□□□□□ -1.6
RFX1P22670 RN7SL690P-201ENST00000582087 240 ntBASIC5.04□□□□□ -1.6
RFX1P22670 AC022335.1-204ENST00000590779 600 ntAPPRIS ALT2 TSL 2 BASIC5.04□□□□□ -1.6
RFX1P22670 MIR6716-201ENST00000613413 80 ntBASIC5.04□□□□□ -1.6
RFX1P22670 CEP152-203ENST00000399334 5097 ntAPPRIS P3 TSL 1 (best) BASIC5.04□□□□□ -1.6
RFX1P22670 CAPS2-206ENST00000409799 1859 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
RFX1P22670 AL592182.3-201ENST00000642132 3304 ntBASIC5.04□□□□□ -1.6
RFX1P22670 Z75746.1-201ENST00000440243 2080 ntBASIC5.04□□□□□ -1.6
RFX1P22670 MRPL50-201ENST00000374865 3332 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
RFX1P22670 CACNB4-273ENST00000638091 4061 ntTSL 5 BASIC5.03□□□□□ -1.6
RFX1P22670 MROH9-202ENST00000367759 3165 ntAPPRIS ALT2 TSL 5 BASIC5.03□□□□□ -1.6
RFX1P22670 RPL26-201ENST00000293842 524 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
RFX1P22670 RNU6-527P-201ENST00000363425 104 ntBASIC5.03□□□□□ -1.6
RFX1P22670 Y_RNA.350-201ENST00000365409 98 ntBASIC5.03□□□□□ -1.6
RFX1P22670 RNU6-898P-201ENST00000365627 104 ntBASIC5.03□□□□□ -1.6
RFX1P22670 RNU6-1026P-201ENST00000384465 108 ntBASIC5.03□□□□□ -1.6
RFX1P22670 RNU6-1035P-201ENST00000384477 107 ntBASIC5.03□□□□□ -1.6
RFX1P22670 FBXO11-201ENST00000402508 3844 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
RFX1P22670 Z98745.1-201ENST00000402553 494 ntBASIC5.03□□□□□ -1.6
RFX1P22670 AL591043.1-201ENST00000432461 424 ntBASIC5.03□□□□□ -1.6
RFX1P22670 AL162591.2-201ENST00000449634 317 ntBASIC5.03□□□□□ -1.6
RFX1P22670 RPL23AP49-201ENST00000492925 468 ntBASIC5.03□□□□□ -1.6
RFX1P22670 AC025741.1-201ENST00000506100 544 ntTSL 4 BASIC5.03□□□□□ -1.6
RFX1P22670 RNU1-61P-201ENST00000516107 151 ntBASIC5.03□□□□□ -1.6
RFX1P22670 RNU2-58P-201ENST00000516403 183 ntBASIC5.03□□□□□ -1.6
RFX1P22670 RN7SKP21-201ENST00000516503 220 ntBASIC5.03□□□□□ -1.6
RFX1P22670 AC002428.2-201ENST00000522973 414 ntTSL 3 BASIC5.03□□□□□ -1.6
RFX1P22670 AC090124.1-201ENST00000525097 448 ntTSL 3 BASIC5.03□□□□□ -1.6
RFX1P22670 AC007458.1-201ENST00000542812 373 ntBASIC5.03□□□□□ -1.6
RFX1P22670 AC007619.1-201ENST00000544086 412 ntTSL 5 BASIC5.03□□□□□ -1.6
RFX1P22670 RPL21P7-201ENST00000557463 483 ntBASIC5.03□□□□□ -1.6
RFX1P22670 AC105129.1-201ENST00000560250 297 ntBASIC5.03□□□□□ -1.6
RFX1P22670 AC087749.1-202ENST00000585020 566 ntTSL 2 BASIC5.03□□□□□ -1.6
RFX1P22670 RPL23AP78-201ENST00000599928 470 ntBASIC5.03□□□□□ -1.6
RFX1P22670 RPL7P50-201ENST00000600588 727 ntBASIC5.03□□□□□ -1.6
RFX1P22670 B3GNTL1P2-201ENST00000603673 288 ntBASIC5.03□□□□□ -1.6
RFX1P22670 MIR92B-201ENST00000607575 96 ntBASIC5.03□□□□□ -1.6
RFX1P22670 TENM1-201ENST00000371130 12875 ntAPPRIS P3 TSL 1 (best) BASIC5.03□□□□□ -1.6
RFX1P22670 EYA1-205ENST00000388742 3907 ntAPPRIS P3 TSL 1 (best) BASIC5.03□□□□□ -1.6
RFX1P22670 NFIB-210ENST00000543693 7622 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
RFX1P22670 AKAP11-201ENST00000025301 9920 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
RFX1P22670 PUS7L-201ENST00000344862 13593 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
RFX1P22670 RPS6KA5-207ENST00000614987 26795 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
RFX1P22670 CUL1P1-201ENST00000509510 2425 ntBASIC5.03□□□□□ -1.6
RFX1P22670 IFI44L-201ENST00000370751 5874 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
RFX1P22670 SYTL2-213ENST00000525702 2727 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
RFX1P22670 OR8D1-202ENST00000641015 8286 ntAPPRIS P1 BASIC5.02□□□□□ -1.61
RFX1P22670 OR8D1-203ENST00000641897 8285 ntAPPRIS P1 BASIC5.02□□□□□ -1.61
RFX1P22670 KIF21A-201ENST00000361418 5044 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
RFX1P22670 KRTAP24-1-201ENST00000340345 1650 ntAPPRIS P1 BASIC5.02□□□□□ -1.61
RFX1P22670 NEGR1-201ENST00000306821 5577 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
RFX1P22670 SLC17A4-203ENST00000439485 3699 ntTSL 5 BASIC5.02□□□□□ -1.61
RFX1P22670 CDK15-204ENST00000450471 3659 ntAPPRIS ALT1 TSL 1 (best) BASIC5.02□□□□□ -1.61
RFX1P22670 Y_RNA.183-201ENST00000363882 113 ntBASIC5.02□□□□□ -1.61
RFX1P22670 RNA5SP515-201ENST00000364570 118 ntBASIC5.02□□□□□ -1.61
RFX1P22670 RNU4-9P-201ENST00000364951 139 ntBASIC5.02□□□□□ -1.61
RFX1P22670 CLDN10-202ENST00000376855 701 ntTSL 2 BASIC5.02□□□□□ -1.61
RFX1P22670 AL359837.1-201ENST00000381357 287 ntBASIC5.02□□□□□ -1.61
RFX1P22670 TRAJ6-201ENST00000390531 62 ntAPPRIS P1 BASIC5.02□□□□□ -1.61
RFX1P22670 SNAP23-203ENST00000397138 477 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
RFX1P22670 RNA5SP239-201ENST00000410218 129 ntBASIC5.02□□□□□ -1.61
RFX1P22670 HSPE1P12-201ENST00000412576 301 ntBASIC5.02□□□□□ -1.61
RFX1P22670 YPEL5P1-201ENST00000419731 367 ntBASIC5.02□□□□□ -1.61
RFX1P22670 RPEP5-201ENST00000441137 268 ntBASIC5.02□□□□□ -1.61
RFX1P22670 AC117465.1-201ENST00000457125 522 ntTSL 3 BASIC5.02□□□□□ -1.61
RFX1P22670 LINC01399-202ENST00000458450 244 ntBASIC5.02□□□□□ -1.61
RFX1P22670 AC010618.1-201ENST00000469924 477 ntBASIC5.02□□□□□ -1.61
RFX1P22670 RPL36AP41-201ENST00000493820 306 ntBASIC5.02□□□□□ -1.61
RFX1P22670 RNA5SP464-201ENST00000516251 108 ntBASIC5.02□□□□□ -1.61
RFX1P22670 Y_RNA.680-201ENST00000516441 93 ntBASIC5.02□□□□□ -1.61
RFX1P22670 Y_RNA.706-201ENST00000516933 99 ntBASIC5.02□□□□□ -1.61
RFX1P22670 IGHVIII-2-1-201ENST00000518843 291 ntBASIC5.02□□□□□ -1.61
RFX1P22670 AP005436.2-201ENST00000528458 252 ntTSL 5 BASIC5.02□□□□□ -1.61
RFX1P22670 MUCL1-205ENST00000619042 243 ntAPPRIS ALT2 TSL 5 BASIC5.02□□□□□ -1.61
RFX1P22670 AC078938.1-201ENST00000620993 318 ntBASIC5.02□□□□□ -1.61
RFX1P22670 MAPK10-353ENST00000641803 8483 ntAPPRIS P2 BASIC5.02□□□□□ -1.61
RFX1P22670 EEF1A1-211ENST00000615060 3508 ntTSL 5 BASIC5.02□□□□□ -1.61
RFX1P22670 SGIP1-204ENST00000371039 4080 ntAPPRIS ALT2 TSL 1 (best) BASIC5.02□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 121.1 ms