Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 API5P2-201ENST00000397055 1498 ntBASIC2.87□□□□□ -1.95
SIX2Q9NPC8 SLC30A6-203ENST00000379343 2354 ntTSL 1 (best) BASIC2.87□□□□□ -1.95
SIX2Q9NPC8 FAM35BP-202ENST00000497389 3337 ntBASIC2.86□□□□□ -1.95
SIX2Q9NPC8 AL139276.1-201ENST00000311910 1001 ntBASIC2.86□□□□□ -1.95
SIX2Q9NPC8 RNU6-451P-201ENST00000362921 107 ntBASIC2.86□□□□□ -1.95
SIX2Q9NPC8 SNORD115-7-201ENST00000365306 82 ntBASIC2.86□□□□□ -1.95
SIX2Q9NPC8 RNU6-877P-201ENST00000383868 107 ntBASIC2.86□□□□□ -1.95
SIX2Q9NPC8 RNU6-1029P-201ENST00000384109 107 ntBASIC2.86□□□□□ -1.95
SIX2Q9NPC8 PIGP-205ENST00000399103 656 ntAPPRIS P1 TSL 1 (best) BASIC2.86□□□□□ -1.95
SIX2Q9NPC8 AL354719.1-201ENST00000406535 843 ntBASIC2.86□□□□□ -1.95
SIX2Q9NPC8 AL356134.1-201ENST00000419815 373 ntTSL 3 BASIC2.86□□□□□ -1.95
SIX2Q9NPC8 SNRPEP10-201ENST00000420249 274 ntBASIC2.86□□□□□ -1.95
SIX2Q9NPC8 MTND4LP11-201ENST00000422184 280 ntBASIC2.86□□□□□ -1.95
SIX2Q9NPC8 MTCYBP8-201ENST00000422855 651 ntBASIC2.86□□□□□ -1.95
SIX2Q9NPC8 PSPC1-AS2-201ENST00000423023 376 ntTSL 3 BASIC2.86□□□□□ -1.95
SIX2Q9NPC8 RPL27AP8-201ENST00000424277 446 ntBASIC2.86□□□□□ -1.95
SIX2Q9NPC8 LINC01675-201ENST00000426519 701 ntTSL 3 BASIC2.86□□□□□ -1.95
SIX2Q9NPC8 AF124730.1-201ENST00000430001 327 ntTSL 2 BASIC2.86□□□□□ -1.95
SIX2Q9NPC8 HMGB1P31-201ENST00000437242 427 ntBASIC2.86□□□□□ -1.95
SIX2Q9NPC8 AL390961.1-201ENST00000446557 319 ntTSL 2 BASIC2.86□□□□□ -1.95
SIX2Q9NPC8 WASF1P1-201ENST00000447560 1131 ntBASIC2.86□□□□□ -1.95
SIX2Q9NPC8 AL162395.1-201ENST00000457882 422 ntBASIC2.86□□□□□ -1.95
SIX2Q9NPC8 AP001086.1-201ENST00000494882 321 ntBASIC2.86□□□□□ -1.95
SIX2Q9NPC8 AC092436.1-201ENST00000506450 503 ntBASIC2.86□□□□□ -1.95
SIX2Q9NPC8 PRDX4P1-201ENST00000507189 574 ntBASIC2.86□□□□□ -1.95
SIX2Q9NPC8 AC098591.2-201ENST00000510152 315 ntBASIC2.86□□□□□ -1.95
SIX2Q9NPC8 RNU6-927P-201ENST00000516199 100 ntBASIC2.86□□□□□ -1.95
SIX2Q9NPC8 RNA5SP503-201ENST00000517047 117 ntBASIC2.86□□□□□ -1.95
SIX2Q9NPC8 SNORA70.24-201ENST00000517233 118 ntBASIC2.86□□□□□ -1.95
SIX2Q9NPC8 AP005435.4-201ENST00000529514 284 ntBASIC2.86□□□□□ -1.95
SIX2Q9NPC8 CLEC2D-214ENST00000543300 399 ntTSL 1 (best) BASIC2.86□□□□□ -1.95
SIX2Q9NPC8 CLEC2D-216ENST00000545918 288 ntTSL 1 (best) BASIC2.86□□□□□ -1.95
SIX2Q9NPC8 AC078778.1-201ENST00000547177 735 ntTSL 3 BASIC2.86□□□□□ -1.95
SIX2Q9NPC8 LINC02328-203ENST00000557195 682 ntTSL 3 BASIC2.86□□□□□ -1.95
SIX2Q9NPC8 MIR4703-201ENST00000577728 79 ntBASIC2.86□□□□□ -1.95
SIX2Q9NPC8 LINC01515-204ENST00000595269 402 ntTSL 5 BASIC2.86□□□□□ -1.95
SIX2Q9NPC8 AL451007.1-201ENST00000595491 289 ntBASIC2.86□□□□□ -1.95
SIX2Q9NPC8 AC007687.1-201ENST00000602704 304 ntBASIC2.86□□□□□ -1.95
SIX2Q9NPC8 AC104763.2-201ENST00000604179 382 ntBASIC2.86□□□□□ -1.95
SIX2Q9NPC8 AL161756.2-201ENST00000604597 246 ntBASIC2.86□□□□□ -1.95
SIX2Q9NPC8 AC106900.2-201ENST00000604994 317 ntBASIC2.86□□□□□ -1.95
SIX2Q9NPC8 AC012531.5-201ENST00000611375 151 ntBASIC2.86□□□□□ -1.95
SIX2Q9NPC8 AC006355.2-201ENST00000629240 317 ntTSL 3 BASIC2.86□□□□□ -1.95
SIX2Q9NPC8 ZNF280D-201ENST00000267807 4328 ntAPPRIS P3 TSL 1 (best) BASIC2.86□□□□□ -1.95
SIX2Q9NPC8 QSER1-204ENST00000527788 5052 ntTSL 2 BASIC2.86□□□□□ -1.95
SIX2Q9NPC8 OR51A4-202ENST00000641898 4393 ntAPPRIS P1 BASIC2.86□□□□□ -1.95
SIX2Q9NPC8 LRRC6-212ENST00000618342 1754 ntAPPRIS ALT1 TSL 5 BASIC2.85□□□□□ -1.95
SIX2Q9NPC8 HERC4-201ENST00000277817 4371 ntTSL 1 (best) BASIC2.85□□□□□ -1.95
SIX2Q9NPC8 MACC1-202ENST00000400331 9159 ntAPPRIS P1 TSL 2 BASIC2.85□□□□□ -1.95
SIX2Q9NPC8 RNU6-50P-201ENST00000362356 103 ntBASIC2.85□□□□□ -1.95
SIX2Q9NPC8 Y_RNA.333-201ENST00000365274 102 ntBASIC2.85□□□□□ -1.95
SIX2Q9NPC8 RFPL3S-202ENST00000382086 455 ntAPPRIS ALT2 TSL 2 BASIC2.85□□□□□ -1.95
SIX2Q9NPC8 DEFB109C-201ENST00000382575 264 ntBASIC2.85□□□□□ -1.95
SIX2Q9NPC8 DEFB109B-201ENST00000382656 264 ntBASIC2.85□□□□□ -1.95
SIX2Q9NPC8 SNORD21-201ENST00000383953 95 ntBASIC2.85□□□□□ -1.95
SIX2Q9NPC8 Y_RNA.576-201ENST00000384781 102 ntBASIC2.85□□□□□ -1.95
SIX2Q9NPC8 RNU6-817P-201ENST00000391083 104 ntBASIC2.85□□□□□ -1.95
SIX2Q9NPC8 AL360182.1-201ENST00000397433 468 ntBASIC2.85□□□□□ -1.95
SIX2Q9NPC8 UBE2V1P2-201ENST00000397758 440 ntBASIC2.85□□□□□ -1.95
SIX2Q9NPC8 AL139397.2-201ENST00000404529 772 ntBASIC2.85□□□□□ -1.95
SIX2Q9NPC8 HSPE1P26-201ENST00000405341 275 ntBASIC2.85□□□□□ -1.95
SIX2Q9NPC8 AC007463.1-201ENST00000416534 734 ntTSL 3 BASIC2.85□□□□□ -1.95
SIX2Q9NPC8 AC133106.1-201ENST00000419029 397 ntTSL 3 BASIC2.85□□□□□ -1.95
SIX2Q9NPC8 AC011243.1-201ENST00000420184 415 ntTSL 3 BASIC2.85□□□□□ -1.95
SIX2Q9NPC8 AL109913.1-201ENST00000421173 514 ntBASIC2.85□□□□□ -1.95
SIX2Q9NPC8 LINC01402-201ENST00000422226 279 ntTSL 3 BASIC2.85□□□□□ -1.95
SIX2Q9NPC8 AC091390.3-201ENST00000426478 338 ntBASIC2.85□□□□□ -1.95
SIX2Q9NPC8 AL360169.1-201ENST00000435116 143 ntTSL 5 BASIC2.85□□□□□ -1.95
SIX2Q9NPC8 RPS24P13-201ENST00000442520 397 ntBASIC2.85□□□□□ -1.95
SIX2Q9NPC8 DPPA3P1-201ENST00000448050 469 ntBASIC2.85□□□□□ -1.95
SIX2Q9NPC8 AC133134.1-201ENST00000466800 359 ntBASIC2.85□□□□□ -1.95
SIX2Q9NPC8 PLCH1-AS2-201ENST00000472913 408 ntTSL 2 BASIC2.85□□□□□ -1.95
SIX2Q9NPC8 TIPARP-AS1-202ENST00000478005 554 ntTSL 4 BASIC2.85□□□□□ -1.95
SIX2Q9NPC8 PTPRG-AS1-210ENST00000498655 547 ntTSL 4 BASIC2.85□□□□□ -1.95
SIX2Q9NPC8 AC025475.1-201ENST00000512939 487 ntTSL 3 BASIC2.85□□□□□ -1.95
SIX2Q9NPC8 RNA5SP401-201ENST00000515920 127 ntBASIC2.85□□□□□ -1.95
SIX2Q9NPC8 RNU4ATAC8P-201ENST00000516196 109 ntBASIC2.85□□□□□ -1.95
SIX2Q9NPC8 RNU6-1256P-201ENST00000516539 103 ntBASIC2.85□□□□□ -1.95
SIX2Q9NPC8 RGS4-209ENST00000531057 544 ntTSL 4 BASIC2.85□□□□□ -1.95
SIX2Q9NPC8 SOX5-AS1-201ENST00000539583 573 ntTSL 4 BASIC2.85□□□□□ -1.95
SIX2Q9NPC8 AC026470.3-201ENST00000563994 438 ntTSL 3 BASIC2.85□□□□□ -1.95
SIX2Q9NPC8 AC174048.1-201ENST00000603389 144 ntBASIC2.85□□□□□ -1.95
SIX2Q9NPC8 AC012409.4-201ENST00000612923 249 ntBASIC2.85□□□□□ -1.95
SIX2Q9NPC8 AC024940.5-201ENST00000622889 474 ntBASIC2.85□□□□□ -1.95
SIX2Q9NPC8 U6.114-201ENST00000636407 96 ntBASIC2.85□□□□□ -1.95
SIX2Q9NPC8 MTND5P42-201ENST00000637720 498 ntBASIC2.85□□□□□ -1.95
SIX2Q9NPC8 ANKRD26P2-201ENST00000445530 1710 ntBASIC2.85□□□□□ -1.95
SIX2Q9NPC8 NOC3L-201ENST00000371361 3455 ntAPPRIS P1 TSL 1 (best) BASIC2.84□□□□□ -1.95
SIX2Q9NPC8 CHD9-203ENST00000447540 11509 ntTSL 5 BASIC2.84□□□□□ -1.95
SIX2Q9NPC8 PP2D1-202ENST00000389050 2151 ntAPPRIS P1 TSL 5 BASIC2.84□□□□□ -1.95
SIX2Q9NPC8 AC103710.2-202ENST00000641454 2853 ntBASIC2.84□□□□□ -1.95
SIX2Q9NPC8 SEL1L2-202ENST00000378072 1892 ntTSL 2 BASIC2.84□□□□□ -1.95
SIX2Q9NPC8 PLSCR5-201ENST00000443512 1969 ntAPPRIS P1 TSL 1 (best) BASIC2.84□□□□□ -1.95
SIX2Q9NPC8 LRMP-221ENST00000636465 4540 ntAPPRIS ALT2 TSL 5 BASIC2.84□□□□□ -1.95
SIX2Q9NPC8 RNU6-552P-201ENST00000362869 119 ntBASIC2.84□□□□□ -1.95
SIX2Q9NPC8 DEFB119-202ENST00000376315 324 ntAPPRIS ALT2 TSL 1 (best) BASIC2.84□□□□□ -1.95
SIX2Q9NPC8 Y_RNA.390-201ENST00000383932 102 ntBASIC2.84□□□□□ -1.95
SIX2Q9NPC8 RNU6-190P-201ENST00000384154 102 ntBASIC2.84□□□□□ -1.95
SIX2Q9NPC8 MIR491-201ENST00000384877 84 ntBASIC2.84□□□□□ -1.95
SIX2Q9NPC8 MIR592-201ENST00000384959 97 ntBASIC2.84□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 87.3 ms