Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 DPPA3P1-201ENST00000448050 469 ntBASIC2.77□□□□□ -1.97
CCDC3Q9BQI4 LINC01691-201ENST00000450546 426 ntTSL 5 BASIC2.77□□□□□ -1.97
CCDC3Q9BQI4 AL136164.1-201ENST00000456795 352 ntTSL 3 BASIC2.77□□□□□ -1.97
CCDC3Q9BQI4 RNU7-23P-201ENST00000459465 62 ntBASIC2.77□□□□□ -1.97
CCDC3Q9BQI4 MRPS17P3-201ENST00000465453 385 ntBASIC2.77□□□□□ -1.97
CCDC3Q9BQI4 RPS26P21-201ENST00000475397 348 ntBASIC2.77□□□□□ -1.97
CCDC3Q9BQI4 PLS1-AS1-201ENST00000485338 346 ntTSL 3 BASIC2.77□□□□□ -1.97
CCDC3Q9BQI4 AC079382.1-201ENST00000493346 557 ntBASIC2.77□□□□□ -1.97
CCDC3Q9BQI4 AC026780.2-201ENST00000503489 730 ntTSL 5 BASIC2.77□□□□□ -1.97
CCDC3Q9BQI4 AC109927.2-201ENST00000506416 303 ntBASIC2.77□□□□□ -1.97
CCDC3Q9BQI4 AC108078.2-201ENST00000510750 236 ntBASIC2.77□□□□□ -1.97
CCDC3Q9BQI4 RNU6-143P-201ENST00000516942 93 ntBASIC2.77□□□□□ -1.97
CCDC3Q9BQI4 AP003730.2-202ENST00000527281 774 ntTSL 3 BASIC2.77□□□□□ -1.97
CCDC3Q9BQI4 OR4R1P-201ENST00000529879 463 ntBASIC2.77□□□□□ -1.97
CCDC3Q9BQI4 AC007619.1-201ENST00000544086 412 ntTSL 5 BASIC2.77□□□□□ -1.97
CCDC3Q9BQI4 AC079600.2-201ENST00000550076 130 ntBASIC2.77□□□□□ -1.97
CCDC3Q9BQI4 LINC02309-201ENST00000553679 207 ntTSL 3 BASIC2.77□□□□□ -1.97
CCDC3Q9BQI4 AL355076.2-202ENST00000553754 574 ntTSL 4 BASIC2.77□□□□□ -1.97
CCDC3Q9BQI4 MIR4775-201ENST00000581168 75 ntBASIC2.77□□□□□ -1.97
CCDC3Q9BQI4 AC005357.2-201ENST00000586473 583 ntTSL 2 BASIC2.77□□□□□ -1.97
CCDC3Q9BQI4 LINC01905-202ENST00000588139 459 ntTSL 3 BASIC2.77□□□□□ -1.97
CCDC3Q9BQI4 AC122108.2-201ENST00000611946 526 ntBASIC2.77□□□□□ -1.97
CCDC3Q9BQI4 AC090617.7-201ENST00000623952 126 ntBASIC2.77□□□□□ -1.97
CCDC3Q9BQI4 IGHVIII-44-202ENST00000636235 289 ntBASIC2.77□□□□□ -1.97
CCDC3Q9BQI4 CCDC82-202ENST00000423339 1878 ntAPPRIS P2 TSL 1 (best) BASIC2.77□□□□□ -1.97
CCDC3Q9BQI4 TMEM232-201ENST00000455884 2501 ntAPPRIS P2 TSL 2 BASIC2.77□□□□□ -1.97
CCDC3Q9BQI4 AC091564.4-201ENST00000533934 2194 ntBASIC2.77□□□□□ -1.97
CCDC3Q9BQI4 ZNF567-201ENST00000360729 2691 ntTSL 1 (best) BASIC2.76□□□□□ -1.97
CCDC3Q9BQI4 CUL3-204ENST00000409777 3147 ntTSL 1 (best) BASIC2.76□□□□□ -1.97
CCDC3Q9BQI4 EBAG9-210ENST00000620557 2186 ntAPPRIS P1 TSL 3 BASIC2.76□□□□□ -1.97
CCDC3Q9BQI4 TRIQK-204ENST00000517858 1882 ntTSL 3 BASIC2.76□□□□□ -1.97
CCDC3Q9BQI4 AC103993.1-201ENST00000521500 1584 ntTSL 5 BASIC2.76□□□□□ -1.97
CCDC3Q9BQI4 OR4K2-204ENST00000641885 8681 ntAPPRIS P1 BASIC2.76□□□□□ -1.97
CCDC3Q9BQI4 LRRC69-201ENST00000343709 720 ntTSL 2 BASIC2.76□□□□□ -1.97
CCDC3Q9BQI4 RNU6-799P-201ENST00000363567 107 ntBASIC2.76□□□□□ -1.97
CCDC3Q9BQI4 RNU6-512P-201ENST00000364438 103 ntBASIC2.76□□□□□ -1.97
CCDC3Q9BQI4 PTPRC-202ENST00000367364 1017 ntTSL 1 (best) BASIC2.76□□□□□ -1.97
CCDC3Q9BQI4 LINC00301-202ENST00000412599 772 ntTSL 1 (best) BASIC2.76□□□□□ -1.97
CCDC3Q9BQI4 AL139413.1-201ENST00000421309 217 ntBASIC2.76□□□□□ -1.97
CCDC3Q9BQI4 AC099548.1-201ENST00000421443 426 ntBASIC2.76□□□□□ -1.97
CCDC3Q9BQI4 AL589823.1-201ENST00000429577 183 ntBASIC2.76□□□□□ -1.97
CCDC3Q9BQI4 MTND4P25-201ENST00000441039 533 ntBASIC2.76□□□□□ -1.97
CCDC3Q9BQI4 SFTA1P-203ENST00000446372 693 ntTSL 1 (best) BASIC2.76□□□□□ -1.97
CCDC3Q9BQI4 AC003071.1-201ENST00000451219 789 ntBASIC2.76□□□□□ -1.97
CCDC3Q9BQI4 CSN1S2AP-201ENST00000451783 779 ntTSL 1 (best) BASIC2.76□□□□□ -1.97
CCDC3Q9BQI4 LINC01069-201ENST00000452933 546 ntTSL 5 BASIC2.76□□□□□ -1.97
CCDC3Q9BQI4 LINC00571-203ENST00000454060 525 ntTSL 3 BASIC2.76□□□□□ -1.97
CCDC3Q9BQI4 AC093899.1-201ENST00000457984 376 ntBASIC2.76□□□□□ -1.97
CCDC3Q9BQI4 SNORD109B-201ENST00000458961 67 ntBASIC2.76□□□□□ -1.97
CCDC3Q9BQI4 RNU7-182P-201ENST00000459009 62 ntBASIC2.76□□□□□ -1.97
CCDC3Q9BQI4 SNORD109A-201ENST00000459128 67 ntBASIC2.76□□□□□ -1.97
CCDC3Q9BQI4 LAMTOR3P2-201ENST00000504479 232 ntBASIC2.76□□□□□ -1.97
CCDC3Q9BQI4 AC104304.1-201ENST00000505797 291 ntAPPRIS P1 TSL 3 BASIC2.76□□□□□ -1.97
CCDC3Q9BQI4 AC105417.1-201ENST00000514691 285 ntBASIC2.76□□□□□ -1.97
CCDC3Q9BQI4 RNU6-914P-201ENST00000516749 109 ntBASIC2.76□□□□□ -1.97
CCDC3Q9BQI4 RNU6-928P-201ENST00000516876 104 ntBASIC2.76□□□□□ -1.97
CCDC3Q9BQI4 RNU6-703P-201ENST00000516946 107 ntBASIC2.76□□□□□ -1.97
CCDC3Q9BQI4 AP003122.3-201ENST00000526316 255 ntBASIC2.76□□□□□ -1.97
CCDC3Q9BQI4 FAM92A1P1-201ENST00000528023 890 ntBASIC2.76□□□□□ -1.97
CCDC3Q9BQI4 AC084851.1-201ENST00000529105 249 ntBASIC2.76□□□□□ -1.97
CCDC3Q9BQI4 GNG2-205ENST00000554736 569 ntAPPRIS P1 TSL 4 BASIC2.76□□□□□ -1.97
CCDC3Q9BQI4 SUB1P2-201ENST00000556401 297 ntBASIC2.76□□□□□ -1.97
CCDC3Q9BQI4 AC022960.1-201ENST00000582269 348 ntTSL 3 BASIC2.76□□□□□ -1.97
CCDC3Q9BQI4 LINC01482-203ENST00000589610 468 ntTSL 3 BASIC2.76□□□□□ -1.97
CCDC3Q9BQI4 AL391646.1-201ENST00000603860 190 ntBASIC2.76□□□□□ -1.97
CCDC3Q9BQI4 NUTF2P8-201ENST00000604593 363 ntBASIC2.76□□□□□ -1.97
CCDC3Q9BQI4 AC004805.2-201ENST00000605382 482 ntBASIC2.76□□□□□ -1.97
CCDC3Q9BQI4 AC012409.4-201ENST00000612923 249 ntBASIC2.76□□□□□ -1.97
CCDC3Q9BQI4 AC025034.2-201ENST00000623264 286 ntBASIC2.76□□□□□ -1.97
CCDC3Q9BQI4 AC124864.2-201ENST00000624736 186 ntBASIC2.76□□□□□ -1.97
CCDC3Q9BQI4 AL358154.1-201ENST00000627075 444 ntTSL 3 BASIC2.76□□□□□ -1.97
CCDC3Q9BQI4 AGTR1-204ENST00000418473 2071 ntTSL 5 BASIC2.76□□□□□ -1.97
CCDC3Q9BQI4 TDRD15-201ENST00000405799 6135 ntAPPRIS P1 TSL 2 BASIC2.76□□□□□ -1.97
CCDC3Q9BQI4 ANKAR-209ENST00000520309 4410 ntAPPRIS P1 TSL 5 BASIC2.76□□□□□ -1.97
CCDC3Q9BQI4 KERA-201ENST00000266719 2162 ntAPPRIS P1 TSL 1 (best) BASIC2.76□□□□□ -1.97
CCDC3Q9BQI4 AC008669.1-201ENST00000565823 2178 ntBASIC2.76□□□□□ -1.97
CCDC3Q9BQI4 MGAT4C-210ENST00000620241 3194 ntAPPRIS P1 TSL 2 BASIC2.75□□□□□ -1.97
CCDC3Q9BQI4 APC-201ENST00000257430 10701 ntAPPRIS P1 TSL 5 BASIC2.75□□□□□ -1.97
CCDC3Q9BQI4 N4BP2L2-211ENST00000504114 2513 ntTSL 5 BASIC2.75□□□□□ -1.97
CCDC3Q9BQI4 ZNF117-204ENST00000620222 5317 ntAPPRIS P1 TSL 1 (best) BASIC2.75□□□□□ -1.97
CCDC3Q9BQI4 AL139276.1-201ENST00000311910 1001 ntBASIC2.75□□□□□ -1.97
CCDC3Q9BQI4 GYPA-201ENST00000324022 751 ntAPPRIS ALT2 TSL 1 (best) BASIC2.75□□□□□ -1.97
CCDC3Q9BQI4 Y_RNA.1-201ENST00000352915 104 ntBASIC2.75□□□□□ -1.97
CCDC3Q9BQI4 MIR196B-201ENST00000384852 84 ntBASIC2.75□□□□□ -1.97
CCDC3Q9BQI4 MIR1-2-201ENST00000384961 85 ntBASIC2.75□□□□□ -1.97
CCDC3Q9BQI4 RNU2-52P-201ENST00000410680 190 ntBASIC2.75□□□□□ -1.97
CCDC3Q9BQI4 RNU2-68P-201ENST00000410878 191 ntBASIC2.75□□□□□ -1.97
CCDC3Q9BQI4 NDUFS5P4-201ENST00000412983 318 ntBASIC2.75□□□□□ -1.97
CCDC3Q9BQI4 AP000473.1-201ENST00000413645 550 ntTSL 3 BASIC2.75□□□□□ -1.97
CCDC3Q9BQI4 BTF3L4P3-201ENST00000418879 476 ntBASIC2.75□□□□□ -1.97
CCDC3Q9BQI4 AL365496.1-201ENST00000426885 215 ntBASIC2.75□□□□□ -1.97
CCDC3Q9BQI4 HMGB1P9-201ENST00000429856 646 ntBASIC2.75□□□□□ -1.97
CCDC3Q9BQI4 AC002486.1-201ENST00000435098 391 ntBASIC2.75□□□□□ -1.97
CCDC3Q9BQI4 RPL23AP20-201ENST00000447965 421 ntBASIC2.75□□□□□ -1.97
CCDC3Q9BQI4 PSPHP1-201ENST00000450062 261 ntBASIC2.75□□□□□ -1.97
CCDC3Q9BQI4 MTATP6P7-201ENST00000453315 681 ntBASIC2.75□□□□□ -1.97
CCDC3Q9BQI4 CECR9-201ENST00000453421 199 ntBASIC2.75□□□□□ -1.97
CCDC3Q9BQI4 RN7SL75P-201ENST00000461926 281 ntBASIC2.75□□□□□ -1.97
CCDC3Q9BQI4 RPS15AP34-201ENST00000487776 387 ntBASIC2.75□□□□□ -1.97
CCDC3Q9BQI4 PTPRG-AS1-210ENST00000498655 547 ntTSL 4 BASIC2.75□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 88.9 ms