Protein–RNA interactions for Protein: Q99250

SCN2A, Sodium channel protein type 2 subunit alpha, humanhuman

Predictions only

Length 2,005 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN2AQ99250 AC040904.1-201ENST00000590850 223 ntBASIC2.11□□□□□ -2.07
SCN2AQ99250 AC022150.3-201ENST00000599143 880 ntTSL 5 BASIC2.11□□□□□ -2.07
SCN2AQ99250 HSPE1P7-201ENST00000604681 321 ntBASIC2.11□□□□□ -2.07
SCN2AQ99250 AC092354.1-201ENST00000606057 376 ntBASIC2.11□□□□□ -2.07
SCN2AQ99250 AC068880.5-201ENST00000624331 290 ntBASIC2.11□□□□□ -2.07
SCN2AQ99250 AL603839.4-201ENST00000624658 1005 ntBASIC2.11□□□□□ -2.07
SCN2AQ99250 RGS18-201ENST00000367460 2150 ntAPPRIS P1 TSL 1 (best) BASIC2.11□□□□□ -2.07
SCN2AQ99250 AC007785.2-201ENST00000598627 1916 ntBASIC2.11□□□□□ -2.07
SCN2AQ99250 AC138915.1-201ENST00000565427 1685 ntBASIC2.1□□□□□ -2.07
SCN2AQ99250 UHMK1-204ENST00000545294 8117 ntTSL 2 BASIC2.1□□□□□ -2.07
SCN2AQ99250 MTND5P6-201ENST00000422338 1798 ntBASIC2.1□□□□□ -2.07
SCN2AQ99250 DEFB114-201ENST00000322066 253 ntAPPRIS P1 TSL 1 (best) BASIC2.1□□□□□ -2.07
SCN2AQ99250 AC073343.1-201ENST00000328239 651 ntBASIC2.1□□□□□ -2.07
SCN2AQ99250 RNU1-73P-201ENST00000383971 164 ntBASIC2.1□□□□□ -2.07
SCN2AQ99250 Y_RNA.608-201ENST00000410647 95 ntBASIC2.1□□□□□ -2.07
SCN2AQ99250 RPS3AP3-201ENST00000411933 242 ntBASIC2.1□□□□□ -2.07
SCN2AQ99250 RPL7P10-201ENST00000417407 739 ntBASIC2.1□□□□□ -2.07
SCN2AQ99250 GPM6BP2-201ENST00000432046 144 ntBASIC2.1□□□□□ -2.07
SCN2AQ99250 GPR143P-201ENST00000434155 205 ntBASIC2.1□□□□□ -2.07
SCN2AQ99250 GPM6BP1-201ENST00000446387 144 ntBASIC2.1□□□□□ -2.07
SCN2AQ99250 AC027673.1-201ENST00000456245 405 ntBASIC2.1□□□□□ -2.07
SCN2AQ99250 AC117386.2-202ENST00000472821 522 ntTSL 3 BASIC2.1□□□□□ -2.07
SCN2AQ99250 AC010273.2-201ENST00000479830 438 ntTSL 5 BASIC2.1□□□□□ -2.07
SCN2AQ99250 AL049874.1-201ENST00000489560 388 ntBASIC2.1□□□□□ -2.07
SCN2AQ99250 RPL23AP49-201ENST00000492925 468 ntBASIC2.1□□□□□ -2.07
SCN2AQ99250 AC099520.1-202ENST00000503650 777 ntTSL 3 BASIC2.1□□□□□ -2.07
SCN2AQ99250 SEM1P1-201ENST00000506694 209 ntBASIC2.1□□□□□ -2.07
SCN2AQ99250 AP003467.2-201ENST00000520175 319 ntBASIC2.1□□□□□ -2.07
SCN2AQ99250 ASPH-224ENST00000522603 842 ntTSL 1 (best) BASIC2.1□□□□□ -2.07
SCN2AQ99250 C14orf105-204ENST00000526336 598 ntTSL 4 BASIC2.1□□□□□ -2.07
SCN2AQ99250 LINC02384-208ENST00000546086 565 ntTSL 3 BASIC2.1□□□□□ -2.07
SCN2AQ99250 MIR5007-201ENST00000583098 95 ntBASIC2.1□□□□□ -2.07
SCN2AQ99250 BCRP9-201ENST00000605312 388 ntBASIC2.1□□□□□ -2.07
SCN2AQ99250 AC067747.1-201ENST00000608026 250 ntBASIC2.1□□□□□ -2.07
SCN2AQ99250 AL365204.3-201ENST00000612448 685 ntBASIC2.1□□□□□ -2.07
SCN2AQ99250 AL158063.1-201ENST00000615349 536 ntBASIC2.1□□□□□ -2.07
SCN2AQ99250 AP001506.1-201ENST00000615444 211 ntBASIC2.1□□□□□ -2.07
SCN2AQ99250 AL359547.2-201ENST00000615810 418 ntBASIC2.1□□□□□ -2.07
SCN2AQ99250 HIKESHI-208ENST00000618164 499 ntTSL 5 BASIC2.1□□□□□ -2.07
SCN2AQ99250 AC009831.4-201ENST00000620744 325 ntBASIC2.1□□□□□ -2.07
SCN2AQ99250 MGST1-207ENST00000535309 1331 ntTSL 1 (best) BASIC2.1□□□□□ -2.07
SCN2AQ99250 HSPA4L-202ENST00000505726 2639 ntTSL 2 BASIC2.1□□□□□ -2.07
SCN2AQ99250 AC008669.1-201ENST00000565823 2178 ntBASIC2.1□□□□□ -2.07
SCN2AQ99250 HELLS-201ENST00000239026 2740 ntTSL 5 BASIC2.1□□□□□ -2.07
SCN2AQ99250 RNU5E-5P-201ENST00000365379 116 ntBASIC2.1□□□□□ -2.07
SCN2AQ99250 CD24P4-201ENST00000382840 243 ntBASIC2.1□□□□□ -2.07
SCN2AQ99250 RPS15AP12-201ENST00000419498 388 ntBASIC2.1□□□□□ -2.07
SCN2AQ99250 AC006041.1-201ENST00000425322 328 ntTSL 3 BASIC2.1□□□□□ -2.07
SCN2AQ99250 RPL7L1P10-201ENST00000427790 463 ntBASIC2.1□□□□□ -2.07
SCN2AQ99250 SNRPEP9-201ENST00000436794 238 ntBASIC2.1□□□□□ -2.07
SCN2AQ99250 HIGD1AP2-201ENST00000446367 280 ntBASIC2.1□□□□□ -2.07
SCN2AQ99250 AP000477.2-201ENST00000447405 778 ntTSL 3 BASIC2.1□□□□□ -2.07
SCN2AQ99250 AL592447.1-201ENST00000447592 540 ntBASIC2.1□□□□□ -2.07
SCN2AQ99250 SNRPGP6-201ENST00000451124 220 ntBASIC2.1□□□□□ -2.07
SCN2AQ99250 MTATP6P7-201ENST00000453315 681 ntBASIC2.1□□□□□ -2.07
SCN2AQ99250 MTND1P12-201ENST00000455231 147 ntBASIC2.1□□□□□ -2.07
SCN2AQ99250 AL139260.1-202ENST00000456813 441 ntTSL 3 BASIC2.1□□□□□ -2.07
SCN2AQ99250 RBM43P1-201ENST00000476891 1081 ntBASIC2.1□□□□□ -2.07
SCN2AQ99250 EIF4EP3-201ENST00000498782 656 ntBASIC2.1□□□□□ -2.07
SCN2AQ99250 AC005920.2-201ENST00000509833 332 ntTSL 3 BASIC2.1□□□□□ -2.07
SCN2AQ99250 RNU5F-8P-201ENST00000515941 111 ntBASIC2.1□□□□□ -2.07
SCN2AQ99250 AC018410.2-201ENST00000540410 610 ntTSL 5 BASIC2.1□□□□□ -2.07
SCN2AQ99250 LINC02350-201ENST00000544419 480 ntTSL 3 BASIC2.1□□□□□ -2.07
SCN2AQ99250 AC107023.1-201ENST00000552757 356 ntTSL 5 BASIC2.1□□□□□ -2.07
SCN2AQ99250 LINC01899-202ENST00000583756 575 ntTSL 3 BASIC2.1□□□□□ -2.07
SCN2AQ99250 AP000403.1-201ENST00000603349 851 ntBASIC2.1□□□□□ -2.07
SCN2AQ99250 AC011890.2-201ENST00000613393 294 ntBASIC2.1□□□□□ -2.07
SCN2AQ99250 AC110994.2-201ENST00000635481 492 ntBASIC2.1□□□□□ -2.07
SCN2AQ99250 ATM-230ENST00000640388 578 ntTSL 5 BASIC2.1□□□□□ -2.07
SCN2AQ99250 MARCH7-203ENST00000409591 2147 ntTSL 2 BASIC2.09□□□□□ -2.07
SCN2AQ99250 RGS22-214ENST00000523287 4033 ntAPPRIS ALT2 TSL 2 BASIC2.09□□□□□ -2.07
SCN2AQ99250 MDM2-207ENST00000360430 891 ntTSL 1 (best) BASIC2.09□□□□□ -2.07
SCN2AQ99250 RNU6-553P-201ENST00000364047 96 ntBASIC2.09□□□□□ -2.07
SCN2AQ99250 SNORD116-2-201ENST00000384274 95 ntBASIC2.09□□□□□ -2.07
SCN2AQ99250 SNORD116-6-201ENST00000384711 96 ntBASIC2.09□□□□□ -2.07
SCN2AQ99250 SNORA40.3-201ENST00000390964 122 ntBASIC2.09□□□□□ -2.07
SCN2AQ99250 MDM2-208ENST00000393410 732 ntTSL 1 (best) BASIC2.09□□□□□ -2.07
SCN2AQ99250 MDM2-210ENST00000393413 657 ntTSL 1 (best) BASIC2.09□□□□□ -2.07
SCN2AQ99250 AP003170.3-201ENST00000399123 158 ntTSL 5 BASIC2.09□□□□□ -2.07
SCN2AQ99250 AL162254.1-202ENST00000419604 497 ntTSL 5 BASIC2.09□□□□□ -2.07
SCN2AQ99250 CYCSP46-201ENST00000423569 204 ntBASIC2.09□□□□□ -2.07
SCN2AQ99250 AC007566.1-201ENST00000427458 643 ntTSL 5 BASIC2.09□□□□□ -2.07
SCN2AQ99250 Z98742.2-201ENST00000431564 187 ntBASIC2.09□□□□□ -2.07
SCN2AQ99250 TTTY16-201ENST00000437686 192 ntTSL 1 (best) BASIC2.09□□□□□ -2.07
SCN2AQ99250 AL360091.3-201ENST00000442146 387 ntTSL 5 BASIC2.09□□□□□ -2.07
SCN2AQ99250 AC131571.1-202ENST00000454509 598 ntTSL 4 BASIC2.09□□□□□ -2.07
SCN2AQ99250 AC027343.1-201ENST00000504765 407 ntTSL 4 BASIC2.09□□□□□ -2.07
SCN2AQ99250 AC010587.1-201ENST00000505809 469 ntBASIC2.09□□□□□ -2.07
SCN2AQ99250 LNX1-AS1-203ENST00000511989 488 ntTSL 2 BASIC2.09□□□□□ -2.07
SCN2AQ99250 AC008549.1-201ENST00000512900 643 ntBASIC2.09□□□□□ -2.07
SCN2AQ99250 PCAT4-202ENST00000514836 373 ntTSL 3 BASIC2.09□□□□□ -2.07
SCN2AQ99250 Y_RNA.689-201ENST00000516589 107 ntBASIC2.09□□□□□ -2.07
SCN2AQ99250 Y_RNA.695-201ENST00000516715 107 ntBASIC2.09□□□□□ -2.07
SCN2AQ99250 IGKV3-31-201ENST00000523109 329 ntBASIC2.09□□□□□ -2.07
SCN2AQ99250 ZNF519P3-201ENST00000557158 1032 ntBASIC2.09□□□□□ -2.07
SCN2AQ99250 HMGB1P14-201ENST00000557424 591 ntBASIC2.09□□□□□ -2.07
SCN2AQ99250 AC137800.2-201ENST00000574375 120 ntBASIC2.09□□□□□ -2.07
SCN2AQ99250 AL049779.4-201ENST00000604500 156 ntBASIC2.09□□□□□ -2.07
SCN2AQ99250 AL022154.1-201ENST00000604698 785 ntBASIC2.09□□□□□ -2.07
SCN2AQ99250 AC025594.3-201ENST00000613068 790 ntBASIC2.09□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 102.6 ms